Rh7CG399800

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008148
Physical Location & Seq
Forward (+)
51089319 .. 51092363
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG399800.1

Sequence Viewer

Length: 1020 bp
ATGGCTGCATCAGAATCCAGGAAGAGAAAGCAGCCTATTCACAGAAAGCTACTCAGAAATGCCAAAGTCGAAATGAGGAGTGAAGAAGAAGGGTTTCAGGGCTCCTGGCACCCGGGGACTGTAATTTCCGTCGACTGCAAACGACGTCGTCACGTTCGGTACCATCATTTTCTGAACGATGATGGTGATAGTCTTGTTGATGTTGTTTCCGTTTCACCCATTTTGGATGGCATTGATTCCGGCAATGTGGACCGGACTTGCTATCGGGGGAATATAAGGCCGTTGCCGCCGAAGATCGAGTTATCAAAATCTAGGCTTCAGTATGGTCTCTGTGTTGATGTGTTTCATAATGATGCTTGGTGGGAAGGTGTCATCTTTGATCATGATGCTGATTCAGAGGAGAGGATGATCTTCTTTCCGGATCTGGGGGACGAGCTCAAGACTGGAATCGACACTCTGCGAATTACTCAGGACTGGGATGAGGTTACAGACAATTGGCGGCAGCGTGGGATTTGGGTGTTTCTTGAGCTGATTCAGAAATACAAGCAAGAATGGTACATTGCTGGTGTTTCCCTGAAGCAGATTTGGTATGACGTGCGGGACAAGGAGGGGTTTGAGGAGCAGATCAAGGAGTGGACATGCCCGATTAGAGATGTGTGGGAAGAGCTGGTTGTGATGGTAATTGATGATAACATAAACATCACTGTGGACACACTGCTTGGTTTTTTGGATTTGCCAAGATGCATGTCACCAGAGGCAGAAAAGAGCCAGGTAGAATTGGATTCTGCTGGTTTTGTTTCCGATGCTAATCTGAATCCTCTTTCCTGGTCTTGTGACCAATTCCTGAAGAATCCTAAATGCGAAATGGTAGTCCCTTTTCCTGATGTAACCAAGTGCATTCTGCCTTTGGAAGATAAGAACCGGTTGAGTTGTAACCGAGTATATTCTAGGAAGAGAACTGGTAGTTTAAAGAGGAGATTGGGAACACCGCAGATGGCAACTCCAAGTACTACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

339

Amino Acids

39.31

Weight (kDa)

5.43

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 21 - 97 1.9e-13 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 148
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 108, 159
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 4 cut(s) 287, 499, 598, 989
AclWI GGATC 1 cut(s) 429
AcuI CTGAAG 3 cut(s) 302, 596, 866
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 3 cut(s) 161, 557, 1009
AfiI CCNNNNNNNGG 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 921
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 4 cut(s) 17, 104, 768, 824
AluBI AGCT 5 cut(s) 49, 436, 529, 667, 1017
AluI AGCT 5 cut(s) 49, 436, 529, 667, 1017
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 5, 31, 502
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
AsiGI ACCGGT 1 cut(s) 921
Asp700I GAANNNNTTC 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 2 cut(s) 113, 114
AsuHPI GGTGA 3 cut(s) 197, 207, 741
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 2 cut(s) 108, 159
BanII GRGCYC 2 cut(s) 104, 438
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 43, 514
BccI CCATC 5 cut(s) 171, 176, 221, 670, 988
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 4 cut(s) 19, 106, 770, 826
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 2 cut(s) 113, 114
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 312, 948
BisI GCNGC 5 cut(s) 6, 32, 287, 500, 503
BlsI GCNGC 5 cut(s) 7, 33, 288, 501, 504
BmcAI AGTACT 1 cut(s) 1009
Bme1390I CCNGG 6 cut(s) 19, 106, 113, 114, 770, 826
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 103, 110, 161
BmrFI CCNGG 6 cut(s) 19, 106, 113, 114, 770, 826
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 5 cut(s) 17, 343, 376, 731, 793
BmuI ACTGGG 1 cut(s) 484
BpuEI CTTGAG 2 cut(s) 422, 545
BpuMI CCSGG 2 cut(s) 113, 114
BsaBI GATNNNNATC 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 112, 113
BsaWI WCCGGW 3 cut(s) 252, 418, 921
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 921
Bse1I ACTGG 3 cut(s) 448, 479, 964
Bse3DI GCAATG 2 cut(s) 250, 558
Bse8I GATNNNNATC 1 cut(s) 807
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 4 cut(s) 19, 106, 770, 826
BseDI CCNNGG 2 cut(s) 112, 113
BseGI GGATG 3 cut(s) 232, 411, 484
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 2 cut(s) 250, 558
BseMII CTCAG 2 cut(s) 67, 482
BseNI ACTGG 3 cut(s) 448, 479, 964
BseRI GAGGAG 4 cut(s) 91, 413, 632, 988
BseXI GCAGC 2 cut(s) 43, 514
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 2 cut(s) 108, 159
BshTI ACCGGT 1 cut(s) 921
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 5 cut(s) 113, 240, 253, 419, 922
BslFI GGGAC 4 cut(s) 130, 443, 614, 857
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 4 cut(s) 130, 443, 614, 857
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 104, 438
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 5 cut(s) 294, 379, 408, 421, 624
BspACI CCGC 4 cut(s) 287, 499, 598, 989
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 66, 481
BspEI TCCGGA 1 cut(s) 418
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 103, 110, 161
BspPI GGATC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 657
BspT107I GGYRCC 2 cut(s) 108, 159
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 250, 558
BsrFI RCCGGY 1 cut(s) 921
BsrI ACTGG 3 cut(s) 448, 479, 964
BssAI RCCGGY 1 cut(s) 921
BssECI CCNNGG 2 cut(s) 112, 113
BssMI GATC 5 cut(s) 294, 379, 408, 421, 624
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 4 cut(s) 19, 106, 770, 826
Bst4CI ACNGT 2 cut(s) 121, 706
Bst6I CTCTTC 3 cut(s) 17, 657, 947
BstACI GRCGYC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 53, 468
BstF5I GGATG 3 cut(s) 232, 411, 484
BstKTI GATC 5 cut(s) 297, 382, 411, 424, 627
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 5 cut(s) 294, 379, 408, 421, 624
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 4 cut(s) 19, 106, 770, 826
BstNSI RCATGY 2 cut(s) 642, 748
BstSCI CCNGG 6 cut(s) 17, 104, 111, 112, 768, 824
BstV1I GCAGC 2 cut(s) 43, 514
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 280
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 3 cut(s) 232, 411, 484
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 2 cut(s) 702, 713
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 921
Cfr13I GGNCC 1 cut(s) 250
Cfr9I CCCGGG 1 cut(s) 112
Csp6I GTAC 3 cut(s) 160, 556, 1008
CspAI ACCGGT 1 cut(s) 921
CviAII CATG 3 cut(s) 383, 639, 745
CviQI GTAC 3 cut(s) 160, 556, 1008
DdeI CTNAG 2 cut(s) 53, 468
DpnI GATC 5 cut(s) 296, 381, 410, 423, 626
DpnII GATC 5 cut(s) 294, 379, 408, 421, 624
DraI TTTAAA 1 cut(s) 969
Eam1104I CTCTTC 3 cut(s) 17, 657, 947
EarI CTCTTC 3 cut(s) 17, 657, 947
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 104, 438
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 3 cut(s) 302, 596, 866
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 436
EcoRII CCWGG 4 cut(s) 17, 104, 768, 824
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 2 cut(s) 104, 438
FaeI CATG 3 cut(s) 386, 642, 748
FaiI YATR 9 cut(s) 275, 324, 348, 384, 591, 640, 695, 746, 943
FaqI GGGAC 4 cut(s) 130, 443, 614, 857
FatI CATG 3 cut(s) 382, 638, 744
FauI CCCGC 1 cut(s) 591
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 5 cut(s) 6, 32, 287, 500, 503
FokI GGATG 3 cut(s) 239, 418, 491
FriOI GRGCYC 2 cut(s) 104, 438
Fsp4HI GCNGC 5 cut(s) 6, 32, 287, 500, 503
FspBI CTAG 2 cut(s) 312, 948
GluI GCNGC 5 cut(s) 6, 32, 287, 500, 503
HaeIII GGCC 1 cut(s) 280
HapII CCGG 5 cut(s) 113, 240, 253, 419, 922
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 3 cut(s) 386, 642, 748
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 8 cut(s) 14, 236, 392, 447, 532, 782, 814, 850
HpaII CCGG 5 cut(s) 113, 240, 253, 419, 922
HphI GGTGA 3 cut(s) 197, 207, 741
Hpy166II GTNNAC 4 cut(s) 133, 250, 636, 709
Hpy188I TCNGA 7 cut(s) 13, 56, 174, 397, 537, 802, 813
Hpy188III TCNNGA 7 cut(s) 383, 419, 439, 470, 524, 844, 881
Hpy8I GTNNAC 4 cut(s) 133, 250, 636, 709
Hpy99I CGWCG 3 cut(s) 134, 147, 150
HpyAV CCTTC 2 cut(s) 83, 359
HpyCH4III ACNGT 2 cut(s) 121, 706
HpyCH4IV ACGT 3 cut(s) 145, 153, 594
HpyCH4V TGCA 4 cut(s) 8, 138, 744, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 2 cut(s) 53, 468
HpySE526I ACGT 3 cut(s) 145, 153, 594
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 3 cut(s) 386, 642, 748
Kpn2I TCCGGA 1 cut(s) 418
KpnI GGTACC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 5 cut(s) 294, 379, 408, 421, 624
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 2 cut(s) 107, 619
Lsp1109I GCAGC 2 cut(s) 43, 514
LweI GCATC 5 cut(s) 17, 343, 376, 731, 793
MaeI CTAG 2 cut(s) 312, 948
MaeII ACGT 3 cut(s) 145, 153, 594
MaeIII GTNAC 6 cut(s) 149, 484, 747, 833, 886, 932
MalI GATC 5 cut(s) 296, 381, 410, 423, 626
MboI GATC 5 cut(s) 294, 379, 408, 421, 624
MboII GAAGA 9 cut(s) 34, 95, 98, 304, 403, 674, 859, 923, 964
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 104, 438
MluCI AATT 6 cut(s) 123, 462, 493, 681, 776, 839
MnlI CCTC 9 cut(s) 69, 391, 396, 475, 601, 610, 748, 828, 966
Mph1103I ATGCAT 1 cut(s) 746
MroI TCCGGA 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 968
MslI CAYNNNNRTG 2 cut(s) 351, 704
MspI CCGG 5 cut(s) 113, 240, 253, 419, 922
MspR9I CCNGG 6 cut(s) 19, 106, 113, 114, 770, 826
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 4 cut(s) 19, 106, 770, 826
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 113, 114
NdeII GATC 5 cut(s) 294, 379, 408, 421, 624
NlaIII CATG 3 cut(s) 386, 642, 748
NlaIV GGNNCC 3 cut(s) 103, 110, 161
NmuCI GTSAC 3 cut(s) 149, 747, 833
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 2 cut(s) 642, 748
PagI TCATGA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 657
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 8 cut(s) 14, 236, 392, 447, 532, 782, 814, 850
PflFI GACNNNGTC 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 921
PkrI GCNGC 5 cut(s) 7, 33, 288, 501, 504
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 4 cut(s) 17, 104, 768, 824
PspGI CCWGG 4 cut(s) 17, 104, 768, 824
PspN4I GGNNCC 3 cut(s) 103, 110, 161
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 3 cut(s) 161, 557, 1009
RsaNI GTAC 3 cut(s) 160, 556, 1008
RseI CAYNNNNRTG 2 cut(s) 351, 704
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 1 cut(s) 968
SatI GCNGC 5 cut(s) 6, 32, 287, 500, 503
Sau3AI GATC 5 cut(s) 294, 379, 408, 421, 624
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 1009
ScrFI CCNGG 6 cut(s) 19, 106, 113, 114, 770, 826
SduI GDGCHC 2 cut(s) 104, 438
SfaNI GCATC 5 cut(s) 17, 343, 376, 731, 793
SinI GGWCC 1 cut(s) 250
SmaI CCCGGG 1 cut(s) 114
SmiMI CAYNNNNRTG 2 cut(s) 351, 704
SmlI CTYRAG 2 cut(s) 437, 524
SmoI CTYRAG 2 cut(s) 437, 524
Sse9I AATT 6 cut(s) 123, 462, 493, 681, 776, 839
SsiI CCGC 4 cut(s) 287, 499, 598, 989
SspMI CTAG 2 cut(s) 312, 948
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 6 cut(s) 17, 104, 111, 112, 768, 824
TaaI ACNGT 2 cut(s) 121, 706
TaiI ACGT 3 cut(s) 148, 156, 597
TaqI TCGA 4 cut(s) 69, 132, 297, 450
TasI AATT 6 cut(s) 123, 462, 493, 681, 776, 839
TatI WGTACW 1 cut(s) 1007
TauI GCSGC 2 cut(s) 289, 502
TfiI GAWTC 8 cut(s) 14, 236, 392, 447, 532, 782, 814, 850
Tru1I TTAA 1 cut(s) 968
Tru9I TTAA 1 cut(s) 968
TscAI CASTG 2 cut(s) 709, 720
TseFI GTSAC 3 cut(s) 149, 747, 833
TseI GCWGC 3 cut(s) 5, 31, 502
Tsp45I GTSAC 3 cut(s) 149, 747, 833
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 2 cut(s) 118, 199
TspMI CCCGGG 1 cut(s) 112
TspRI CASTG 2 cut(s) 709, 720
Tth111I GACNNNGTC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 250
XceI RCATGY 2 cut(s) 642, 748
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 312, 948
ZraI GACGTC 1 cut(s) 146
ZrmI AGTACT 1 cut(s) 1009
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.