Rmu_sc0002881.1_g000001

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002881.1
OG0008148
Physical Location & Seq
Forward (+)
4433 .. 5340
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002881.1_g000001.1.cds

Sequence Viewer

Length: 660 bp
atggctgcatcagaatccaggaagagaaagcagcctactcacagaaagctactcagaaatgccaaagtcgaaatgaggagtgaagaagaagggtttcagggctcctggcacccggggactgtaatttccgtcgactgcaaacgacgtcgtcacgttcagtaccatcattttctgaacgatgatggtgatagtcttgttgatgttgtttccgtttcacccattttggatggcattgattccggcaatgtggaccggacttgctatcgggggaatataaggccgttgccgccgaagatcgagttatcaaaatctaggcttcagtatggtctctgtgttgatgtgtttcataatgatgcttggtgggaaggtgtcatatttgatcatgatgctgattcagaggagaggatgatcttctttccggatctgggggacgagctcaagactggaattgacactctgcgaattactcaggactgggatgaggttacggacaattggcggcagcgtgggatgtgggtgtttcttgagctgattcagaaatacaagcaagaatggtacattgctggtgtttccctgaggcagatttggtatgacgtgcgagacaaggaggagtttgaggaacagatcaaggagtggacgtgtccgattagtgatgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

219

Amino Acids

25.86

Weight (kDa)

5.22

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 2 cut(s) 287, 499
AclWI GGATC 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 2 cut(s) 161, 557
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 638
AjiI CACGTC 2 cut(s) 595, 639
AjnI CCWGG 2 cut(s) 17, 104
AluBI AGCT 3 cut(s) 49, 436, 529
AluI AGCT 3 cut(s) 49, 436, 529
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 2 cut(s) 332, 594
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 5, 31, 502
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 2 cut(s) 113, 114
AsuHPI GGTGA 2 cut(s) 197, 207
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 575
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 2 cut(s) 104, 438
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 43, 514
BccI CCATC 3 cut(s) 171, 176, 221
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 19, 106
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 2 cut(s) 113, 114
BcoDI GTCTC 2 cut(s) 332, 594
BfaI CTAG 1 cut(s) 312
BisI GCNGC 5 cut(s) 6, 32, 287, 500, 503
BlsI GCNGC 5 cut(s) 7, 33, 288, 501, 504
Bme1390I CCNGG 4 cut(s) 19, 106, 113, 114
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 112
BmgBI CACGTC 2 cut(s) 595, 639
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 103, 110
BmrFI CCNGG 4 cut(s) 19, 106, 113, 114
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 3 cut(s) 17, 343, 376
BmuI ACTGGG 1 cut(s) 484
BpuEI CTTGAG 2 cut(s) 422, 545
BpuMI CCSGG 2 cut(s) 113, 114
BsaHI GRCGYC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 112, 113
BsaWI WCCGGW 2 cut(s) 252, 418
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 448, 479
Bse21I CCTNAGG 1 cut(s) 575
Bse3DI GCAATG 2 cut(s) 250, 558
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 2 cut(s) 19, 106
BseDI CCNNGG 2 cut(s) 112, 113
BseGI GGATG 4 cut(s) 232, 411, 484, 516
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 2 cut(s) 250, 558
BseMII CTCAG 3 cut(s) 67, 482, 566
BseNI ACTGG 2 cut(s) 448, 479
BseRI GAGGAG 3 cut(s) 91, 413, 623
BseXI GCAGC 2 cut(s) 43, 514
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 4 cut(s) 113, 240, 253, 419
BslFI GGGAC 2 cut(s) 130, 443
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 332, 594
BsmFI GGGAC 2 cut(s) 130, 443
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 104, 438
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 5 cut(s) 294, 379, 408, 421, 624
BspACI CCGC 2 cut(s) 287, 499
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 3 cut(s) 66, 481, 567
BspEI TCCGGA 1 cut(s) 418
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 103, 110
BspPI GGATC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 250, 558
BsrI ACTGG 2 cut(s) 448, 479
BssECI CCNNGG 2 cut(s) 112, 113
BssMI GATC 5 cut(s) 294, 379, 408, 421, 624
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 19, 106
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 145
BstDEI CTNAG 3 cut(s) 53, 468, 575
BstF5I GGATG 4 cut(s) 232, 411, 484, 516
BstKTI GATC 5 cut(s) 297, 382, 411, 424, 627
BstMAI GTCTC 2 cut(s) 332, 594
BstMBI GATC 5 cut(s) 294, 379, 408, 421, 624
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 2 cut(s) 19, 106
BstSCI CCNGG 4 cut(s) 17, 104, 111, 112
BstV1I GCAGC 2 cut(s) 43, 514
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 575
BsuRI GGCC 1 cut(s) 280
BtrI CACGTC 2 cut(s) 595, 639
BtsCI GGATG 4 cut(s) 232, 411, 484, 516
CciI TCATGA 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 250
Cfr9I CCCGGG 1 cut(s) 112
Csp6I GTAC 2 cut(s) 160, 556
CviAII CATG 1 cut(s) 383
CviJI RGCY 8 cut(s) 5, 34, 49, 102, 280, 316, 436, 529
CviKI_1 RGCY 8 cut(s) 5, 34, 49, 102, 280, 316, 436, 529
CviQI GTAC 2 cut(s) 160, 556
DdeI CTNAG 3 cut(s) 53, 468, 575
DpnI GATC 5 cut(s) 296, 381, 410, 423, 626
DpnII GATC 5 cut(s) 294, 379, 408, 421, 624
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 104, 438
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 17, 104
EcoT38I GRGCYC 2 cut(s) 104, 438
FaeI CATG 1 cut(s) 386
FaiI YATR 6 cut(s) 275, 324, 348, 374, 384, 591
FaqI GGGAC 2 cut(s) 130, 443
FatI CATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 5 cut(s) 6, 32, 287, 500, 503
FokI GGATG 4 cut(s) 239, 418, 491, 523
FriOI GRGCYC 2 cut(s) 104, 438
Fsp4HI GCNGC 5 cut(s) 6, 32, 287, 500, 503
FspBI CTAG 1 cut(s) 312
GluI GCNGC 5 cut(s) 6, 32, 287, 500, 503
HaeIII GGCC 1 cut(s) 280
HapII CCGG 4 cut(s) 113, 240, 253, 419
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 1 cut(s) 386
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 14, 236, 392, 532
HpaII CCGG 4 cut(s) 113, 240, 253, 419
HphI GGTGA 2 cut(s) 197, 207
Hpy166II GTNNAC 3 cut(s) 133, 250, 636
Hpy188I TCNGA 6 cut(s) 13, 56, 174, 397, 537, 645
Hpy188III TCNNGA 5 cut(s) 383, 419, 439, 470, 524
Hpy8I GTNNAC 3 cut(s) 133, 250, 636
Hpy99I CGWCG 3 cut(s) 134, 147, 150
HpyAV CCTTC 2 cut(s) 83, 359
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 4 cut(s) 145, 153, 594, 638
HpyCH4V TGCA 2 cut(s) 8, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 3 cut(s) 53, 468, 575
HpySE526I ACGT 4 cut(s) 145, 153, 594, 638
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 386
Kpn2I TCCGGA 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 5 cut(s) 294, 379, 408, 421, 624
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 43, 514
LweI GCATC 3 cut(s) 17, 343, 376
MaeI CTAG 1 cut(s) 312
MaeII ACGT 4 cut(s) 145, 153, 594, 638
MaeIII GTNAC 2 cut(s) 149, 484
MalI GATC 5 cut(s) 296, 381, 410, 423, 626
MboI GATC 5 cut(s) 294, 379, 408, 421, 624
MboII GAAGA 5 cut(s) 34, 95, 98, 304, 403
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 104, 438
MluCI AATT 4 cut(s) 123, 447, 462, 493
MnlI CCTC 7 cut(s) 69, 391, 396, 475, 570, 601, 610
MroI TCCGGA 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 4 cut(s) 113, 240, 253, 419
MspR9I CCNGG 4 cut(s) 19, 106, 113, 114
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 2 cut(s) 19, 106
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 113, 114
NdeII GATC 5 cut(s) 294, 379, 408, 421, 624
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 103, 110
NmuCI GTSAC 1 cut(s) 149
PagI TCATGA 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 4 cut(s) 14, 236, 392, 532
PflFI GACNNNGTC 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 5 cut(s) 7, 33, 288, 501, 504
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 17, 104
PspGI CCWGG 2 cut(s) 17, 104
PspN4I GGNNCC 2 cut(s) 103, 110
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 2 cut(s) 161, 557
RsaNI GTAC 2 cut(s) 160, 556
RseI CAYNNNNRTG 1 cut(s) 351
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 131
SatI GCNGC 5 cut(s) 6, 32, 287, 500, 503
Sau3AI GATC 5 cut(s) 294, 379, 408, 421, 624
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 4 cut(s) 19, 106, 113, 114
SduI GDGCHC 2 cut(s) 104, 438
SetI ASST 9 cut(s) 51, 148, 156, 370, 438, 486, 531, 597, 641
SfaNI GCATC 3 cut(s) 17, 343, 376
SinI GGWCC 1 cut(s) 250
SmaI CCCGGG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 437, 524
SmoI CTYRAG 2 cut(s) 437, 524
Sse9I AATT 4 cut(s) 123, 447, 462, 493
SsiI CCGC 2 cut(s) 287, 499
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 4 cut(s) 17, 104, 111, 112
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 4 cut(s) 148, 156, 597, 641
TaqI TCGA 3 cut(s) 69, 132, 297
TasI AATT 4 cut(s) 123, 447, 462, 493
TauI GCSGC 2 cut(s) 289, 502
TfiI GAWTC 4 cut(s) 14, 236, 392, 532
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 3 cut(s) 5, 31, 502
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 3 cut(s) 118, 199, 503
TspMI CCCGGG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 312
ZraI GACGTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.