Rorug07G0223100

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008148
Physical Location & Seq
Reverse (-)
20231017 .. 20232820
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0223100.1

Sequence Viewer

Length: 492 bp
ATGGACTCGGTTTCGAGCGCAAGGAGGCCCTGTTTCATCGAGGAAGATGATGGGTTGGCCTCGCTGGCTGATATGGAAGCTGGGTTTTCCGGGAGTCAGCAGCATCCCTTTTTTTCTAGGCCCATGTGTTATTCGAGGAAGGGGAGCTTTAGAAACCTATCGGTGATGGGGTCAAACTCGTCTCTGTCCCCGAGATCTGGGAGGTTCTGGGATGCCAGGTTTGAGGAGCACCAGCCTCATTTCTTGGAGGCTTGTTTTCTCTGCAAGAAACCTCTTGGCGATAACAGAGACATCTTCATGTACAGAGGTGACACTCCCTTCTGTAGTGAAGAGTGCAGAGGTGAGCAGATAGAGATAGATGAAGCTAATGAGAAGAACTGGAATCTCTCGTCTTCCATGAAAGCCTTGAGAAAGAGGGAGCAAAGGAAATCCAGCTCCCCGAACACCGCAAAGGACTACCCTTTCCGGCCAGGCACAGTAGCAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

6.82

Isoelectric Point (pI)

63.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 73 - 122 7.4e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 467
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 197
AjnI CCWGG 2 cut(s) 215, 469
AluBI AGCT 5 cut(s) 80, 147, 365, 435, 488
AluI AGCT 5 cut(s) 80, 147, 365, 435, 488
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 186, 282
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 4 cut(s) 26, 57, 119, 467
ApeKI GCWGC 3 cut(s) 100, 482, 485
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 27, 120
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 175, 320, 353
AvaI CYCGRG 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 44, 160
BciT130I CCWGG 2 cut(s) 217, 471
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 186, 282
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 194
BisI GCNGC 3 cut(s) 101, 483, 486
BlsI GCNGC 3 cut(s) 102, 484, 487
Bme1390I CCNGG 3 cut(s) 91, 217, 471
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 27, 120
BmrFI CCNGG 3 cut(s) 91, 217, 471
BmsI GCATC 2 cut(s) 112, 202
BpiI GAAGAC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 383
BseBI CCWGG 2 cut(s) 217, 471
BseGI GGATG 2 cut(s) 103, 217
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 355
BshFI GGCC 4 cut(s) 28, 59, 121, 469
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 2 cut(s) 90, 466
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 186, 282
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 4 cut(s) 28, 59, 121, 469
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 447
BspANI GGCC 4 cut(s) 28, 59, 121, 469
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 383
BssMI GATC 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 217, 471
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 66
BstF5I GGATG 2 cut(s) 103, 217
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 2 cut(s) 186, 282
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 2 cut(s) 217, 471
BstSCI CCNGG 3 cut(s) 89, 215, 469
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 4 cut(s) 28, 59, 121, 469
BtsCI GGATG 2 cut(s) 103, 217
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 27, 120
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 124, 298, 397
CviQI GTAC 1 cut(s) 301
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 215, 469
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 3 cut(s) 127, 301, 400
FaiI YATR 4 cut(s) 74, 125, 299, 398
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 123, 297, 396
Fnu4HI GCNGC 3 cut(s) 101, 483, 486
FokI GGATG 2 cut(s) 90, 224
Fsp4HI GCNGC 3 cut(s) 101, 483, 486
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 19
GluI GCNGC 3 cut(s) 101, 483, 486
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 4 cut(s) 28, 59, 121, 469
HapII CCGG 2 cut(s) 90, 466
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 127, 301, 400
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 3 cut(s) 5, 94, 382
HpaII CCGG 2 cut(s) 90, 466
HphI GGTGA 3 cut(s) 175, 320, 353
HpyAV CCTTC 2 cut(s) 133, 328
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 2 cut(s) 264, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Hsp92II CATG 3 cut(s) 127, 301, 400
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 4 cut(s) 144, 226, 418, 440
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 112, 202
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 5 cut(s) 56, 286, 341, 384, 385
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 231
MlyI GAGTC 1 cut(s) 103
MseI TTAA 1 cut(s) 490
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 2 cut(s) 90, 466
MspR9I CCNGG 3 cut(s) 91, 217, 471
MvaI CCWGG 2 cut(s) 217, 471
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 194
NlaIII CATG 3 cut(s) 127, 301, 400
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 102, 484, 487
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 215, 469
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 2 cut(s) 215, 469
PspPI GGNCC 2 cut(s) 27, 120
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 3 cut(s) 101, 483, 486
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 2 cut(s) 27, 120
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 3 cut(s) 91, 217, 471
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 112, 202
SfcI CTRYAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SsiI CCGC 1 cut(s) 447
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 3 cut(s) 89, 215, 469
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 3 cut(s) 14, 39, 134
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 100, 482, 485
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 25, 286, 375, 413
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.