RchiOBHm_Chr7g0222821

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008148
Physical Location & Seq
Reverse (-)
44435131 .. 44435638
508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19947

Sequence Viewer

Length: 342 bp
ATGGCTGCATCAGAATCCAGGAAGAGAAAGCAGCCTACTCACAGAAAGCTACTCAGAAATGCCAAAGTCGAAATGAGGAGTGAAGAAGAAGGGTTTCAGGGCTCCTGGCACCCGGGGACTGTAATTTCCGTCGACTGCAAACGACGTCGTCACGTTCAGTACCATCATTTTCTGAACGATGATGGTGATAGTCTTGTTGATGTTGTTTCCGTTTCACCCATTTTGGATGGCATTGATTCCGGCAATGTGGACCGGACTTGCTATCGGGGGAATATAAGGCCGTTGCCGCCGAAGATCGAGTTATCAAAATCTAGGCTTCGATCAGTATGGTCTCTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

113

Amino Acids

12.94

Weight (kDa)

9.6

Isoelectric Point (pI)

69.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 21 - 97 2.2e-14 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 1 cut(s) 161
AjnI CCWGG 2 cut(s) 17, 104
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 5, 31
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 2 cut(s) 113, 114
AsuHPI GGTGA 2 cut(s) 197, 207
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 171, 176, 221
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 19, 106
BcnI CCSGG 2 cut(s) 113, 114
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 312
BisI GCNGC 3 cut(s) 6, 32, 287
BlsI GCNGC 3 cut(s) 7, 33, 288
Bme1390I CCNGG 4 cut(s) 19, 106, 113, 114
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 103, 110
BmrFI CCNGG 4 cut(s) 19, 106, 113, 114
BmsI GCATC 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 113, 114
BsaHI GRCGYC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 112, 113
BsaWI WCCGGW 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 19, 106
BseDI CCNNGG 2 cut(s) 112, 113
BseGI GGATG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 3 cut(s) 113, 240, 253
BslFI GGGAC 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 294, 320
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 103, 110
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 112, 113
BssMI GATC 2 cut(s) 294, 320
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 19, 106
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 297, 323
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 2 cut(s) 294, 320
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 2 cut(s) 19, 106
BstSCI CCNGG 4 cut(s) 17, 104, 111, 112
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 250
Cfr9I CCCGGG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 160
CviJI RGCY 6 cut(s) 5, 34, 49, 102, 280, 316
CviKI_1 RGCY 6 cut(s) 5, 34, 49, 102, 280, 316
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 296, 322
DpnII GATC 2 cut(s) 294, 320
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 17, 104
EcoT38I GRGCYC 1 cut(s) 104
FaiI YATR 2 cut(s) 275, 328
FaqI GGGAC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 6, 32, 287
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 6, 32, 287
FspBI CTAG 1 cut(s) 312
GluI GCNGC 3 cut(s) 6, 32, 287
HaeIII GGCC 1 cut(s) 280
HapII CCGG 3 cut(s) 113, 240, 253
Hin1I GRCGYC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 14, 236
HpaII CCGG 3 cut(s) 113, 240, 253
HphI GGTGA 2 cut(s) 197, 207
Hpy166II GTNNAC 2 cut(s) 133, 250
Hpy188I TCNGA 3 cut(s) 13, 56, 174
Hpy8I GTNNAC 2 cut(s) 133, 250
Hpy99I CGWCG 3 cut(s) 134, 147, 150
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 145, 153
HpyCH4V TGCA 2 cut(s) 8, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 2 cut(s) 145, 153
Hsp92I GRCGYC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 294, 320
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 8 cut(s) 4, 31, 83, 91, 118, 126, 253, 266
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 145, 153
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 296, 322
MboI GATC 2 cut(s) 294, 320
MboII GAAGA 4 cut(s) 34, 95, 98, 304
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 123
MnlI CCTC 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 93
MspI CCGG 3 cut(s) 113, 240, 253
MspR9I CCNGG 4 cut(s) 19, 106, 113, 114
MvaI CCWGG 2 cut(s) 19, 106
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 113, 114
NdeII GATC 2 cut(s) 294, 320
NlaIV GGNNCC 2 cut(s) 103, 110
NmuCI GTSAC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 14, 236
PflFI GACNNNGTC 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 3 cut(s) 7, 33, 288
Psp6I CCWGG 2 cut(s) 17, 104
PspGI CCWGG 2 cut(s) 17, 104
PspN4I GGNNCC 2 cut(s) 103, 110
PspPI GGNCC 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SalI GTCGAC 1 cut(s) 131
SatI GCNGC 3 cut(s) 6, 32, 287
Sau3AI GATC 2 cut(s) 294, 320
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 4 cut(s) 19, 106, 113, 114
SduI GDGCHC 1 cut(s) 104
SetI ASST 3 cut(s) 51, 148, 156
SfaNI GCATC 1 cut(s) 17
SinI GGWCC 1 cut(s) 250
SmaI CCCGGG 1 cut(s) 114
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 287
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 17, 104, 111, 112
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 148, 156
TaqI TCGA 4 cut(s) 69, 132, 297, 319
TasI AATT 1 cut(s) 123
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 2 cut(s) 14, 236
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 5, 31
Tsp45I GTSAC 1 cut(s) 149
TspGWI ACGGA 2 cut(s) 118, 199
TspMI CCCGGG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 312
ZraI GACGTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.