Rmu_co8174364.1_g000001

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8174364.1
OG0008148
Physical Location & Seq
Forward (+)
1 .. 677
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8174364.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
gtgaggagtgaagaagaaggctttcagggctcatggcaccctgggactgtcactgcatgcaccaaaggttgtcgtaaagtagaatatgatcatattctatgtgatgatgggtctgctaatcttgtggatgctgtttatgtttctcccatattggatggcattgattctgtaaatgatgagcagagtaattaccatcgcggaagtataaggccaaagcctcctaagattgagttaggggcatggggtcttccctatggaatctgtgtggatgtgtatcatcaggatgcatggtgggaaggtgtagtttttgatcatgaagatggttcagaaaagaggaagatcttctttccggatttgggagatgaactaacaactggaattgac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

4.56

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AccII CGCG 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 356
AjnI CCWGG 1 cut(s) 40
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 1 cut(s) 209
Asp700I GAANNNNTTC 2 cut(s) 21, 341
BanI GGYRCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 4 cut(s) 101, 149, 201, 314
BciT130I CCWGG 1 cut(s) 42
BclI TGATCA 2 cut(s) 88, 310
BglII AGATCT 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 118, 274
BpiI GAAGAC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 40, 41
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 379
Bse8I GATNNNNATC 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 40, 41
BseGI GGATG 4 cut(s) 133, 160, 274, 289
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 3 cut(s) 88, 310, 339
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 211
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 2 cut(s) 40, 41
BssMI GATC 3 cut(s) 88, 310, 339
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 133, 160, 274, 289
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 3 cut(s) 91, 313, 342
BstMBI GATC 3 cut(s) 88, 310, 339
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 4 cut(s) 133, 160, 274, 289
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 313
CviAII CATG 5 cut(s) 33, 57, 240, 288, 314
CviJI RGCY 4 cut(s) 21, 30, 211, 217
CviKI_1 RGCY 4 cut(s) 21, 30, 211, 217
DdeI CTNAG 1 cut(s) 222
DpnI GATC 3 cut(s) 90, 312, 341
DpnII GATC 3 cut(s) 88, 310, 339
Eco24I GRGCYC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 5 cut(s) 36, 60, 243, 291, 317
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 58
FatI CATG 5 cut(s) 32, 56, 239, 287, 313
FbaI TGATCA 2 cut(s) 88, 310
FokI GGATG 4 cut(s) 140, 167, 281, 296
FriOI GRGCYC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 211
HapII CCGG 1 cut(s) 350
Hin1II CATG 5 cut(s) 36, 60, 243, 291, 317
HinfI GANTC 2 cut(s) 164, 258
HpaII CCGG 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 281, 314, 350
HpyAV CCTTC 2 cut(s) 11, 290
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 56, 60, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 5 cut(s) 36, 60, 243, 291, 317
Kpn2I TCCGGA 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 88, 310
Kzo9I GATC 3 cut(s) 88, 310, 339
LpnPI CCDG 6 cut(s) 11, 27, 54, 266, 360, 363
LweI GCATC 2 cut(s) 118, 274
MaeIII GTNAC 1 cut(s) 49
MalI GATC 3 cut(s) 90, 312, 341
MboI GATC 3 cut(s) 88, 310, 339
MboII GAAGA 6 cut(s) 23, 26, 239, 329, 334, 349
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 2 cut(s) 187, 378
MnlI CCTC 2 cut(s) 228, 327
Mph1103I ATGCAT 1 cut(s) 289
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 2 cut(s) 21, 341
MslI CAYNNNNRTG 2 cut(s) 282, 318
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 3 cut(s) 88, 310, 339
NlaIII CATG 5 cut(s) 36, 60, 243, 291, 317
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PagI TCATGA 1 cut(s) 313
PasI CCCWGGG 1 cut(s) 41
PdmI GAANNNNTTC 2 cut(s) 21, 341
PfeI GAWTC 2 cut(s) 164, 258
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 339
RseI CAYNNNNRTG 2 cut(s) 282, 318
Sau3AI GATC 3 cut(s) 88, 310, 339
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 32
SetI ASST 2 cut(s) 70, 301
SfaNI GCATC 2 cut(s) 118, 274
SmiMI CAYNNNNRTG 2 cut(s) 282, 318
SphI GCATGC 1 cut(s) 60
Sse9I AATT 2 cut(s) 187, 378
SsiI CCGC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 49
TasI AATT 2 cut(s) 187, 378
TfiI GAWTC 2 cut(s) 164, 258
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 330, 378
TspRI CASTG 1 cut(s) 58
XceI RCATGY 1 cut(s) 60
XmnI GAANNNNTTC 2 cut(s) 21, 341
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.