RchiOBHm_Chr7g0227481

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019043
Physical Location & Seq
Reverse (-)
50701655 .. 50702394
740 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGACTGTTTTGTCAAGGGTTGTGATGCCTCAATCCTGTTGGACGCGACACCCTGGTGATCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGTCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCCAAACTATTTCCTGCGCTGACAAATTAGCATTTGCTGCTCGAGAAGCTGTTTACCTAGCCAGCCTACCCCGTCACAATGTCCCAACCCGTCGCCGTGACGGTAGGACTTCACGTGATTCTGATGTCAATTTCAACCTCCCTACACCTGTAACACCTCTGAAAGACATTACAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTCGTCCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAATTGAACACAGACTATACAAATATAGCAAAGCTCAACCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

5.6

Isoelectric Point (pI)

60.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 22 - 143 1.5e-32 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccII CGCG 1 cut(s) 46
AclWI GGATC 1 cut(s) 53
AcvI CACGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 2 cut(s) 286, 415
AjnI CCWGG 3 cut(s) 52, 132, 461
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 3 cut(s) 200, 442, 486
AluI AGCT 3 cut(s) 200, 442, 486
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 2 cut(s) 373, 446
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 2 cut(s) 192, 449
AoxI GGCC 1 cut(s) 129
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 130, 465
AsuHPI GGTGA 2 cut(s) 68, 69
AvaI CYCGRG 2 cut(s) 192, 449
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 2 cut(s) 152, 382
BbrPI CACGTG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 3 cut(s) 54, 134, 463
BcoDI GTCTC 2 cut(s) 373, 446
BfaI CTAG 3 cut(s) 209, 353, 487
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 3 cut(s) 54, 134, 463
Bme18I GGWCC 1 cut(s) 465
BmeT110I CYCGRG 2 cut(s) 192, 449
BmgT120I GGNCC 2 cut(s) 130, 465
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 3 cut(s) 54, 134, 463
BmsI GCATC 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 52, 132, 461
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 462
BseBI CCWGG 3 cut(s) 54, 134, 463
BseDI CCNNGG 3 cut(s) 52, 132, 461
BseLI CCNNNNNNNGG 1 cut(s) 462
BseSI GKGCMC 2 cut(s) 152, 382
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 192, 449
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 2 cut(s) 373, 446
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 2 cut(s) 192, 449
Bsp1286I GDGCHC 2 cut(s) 152, 382
Bsp143I GATC 2 cut(s) 58, 123
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 467
BspPI GGATC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 52, 132, 461
BssMI GATC 2 cut(s) 58, 123
Bst2UI CCWGG 3 cut(s) 54, 134, 463
Bst4CI ACNGT 2 cut(s) 7, 254
BstAPI GCANNNNNTGC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 214
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 2 cut(s) 61, 126
BstMAI GTCTC 2 cut(s) 373, 446
BstMBI GATC 2 cut(s) 58, 123
BstMWI GCNNNNNNNGC 2 cut(s) 188, 197
BstNI CCWGG 3 cut(s) 54, 134, 463
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 3 cut(s) 52, 132, 461
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 152, 382
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 130, 465
CseI GACGC 1 cut(s) 52
CviAII CATG 1 cut(s) 328
CviJI RGCY 7 cut(s) 83, 131, 200, 212, 216, 442, 486
CviKI_1 RGCY 7 cut(s) 83, 131, 200, 212, 216, 442, 486
DpnI GATC 2 cut(s) 60, 125
DpnII GATC 2 cut(s) 58, 123
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 465
Eco72I CACGTG 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 192, 449
EcoRII CCWGG 3 cut(s) 52, 132, 461
FaeI CATG 1 cut(s) 331
FaiI YATR 6 cut(s) 65, 329, 362, 426, 434, 476
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 3 cut(s) 209, 353, 487
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 375
HphI GGTGA 2 cut(s) 68, 69
Hpy166II GTNNAC 2 cut(s) 205, 380
Hpy188I TCNGA 2 cut(s) 274, 312
Hpy188III TCNNGA 2 cut(s) 107, 194
Hpy8I GTNNAC 2 cut(s) 205, 380
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 2 cut(s) 7, 254
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 380, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 197
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 58, 123
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 15
MaeI CTAG 3 cut(s) 209, 353, 487
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 3 cut(s) 224, 248, 301
MalI GATC 2 cut(s) 60, 125
MboI GATC 2 cut(s) 58, 123
MboII GAAGA 1 cut(s) 368
MfeI CAATTG 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 152, 382
MluCI AATT 3 cut(s) 176, 280, 410
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 4 cut(s) 39, 95, 299, 318
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 3 cut(s) 54, 134, 463
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 3 cut(s) 54, 134, 463
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 188, 197
NdeII GATC 2 cut(s) 58, 123
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 2 cut(s) 224, 248
NspI RCATGY 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 192
PciI ACATGT 1 cut(s) 327
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 190
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 266
PscI ACATGT 1 cut(s) 327
Psp6I CCWGG 3 cut(s) 52, 132, 461
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 3 cut(s) 52, 132, 461
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 2 cut(s) 130, 465
RseI CAYNNNNRTG 1 cut(s) 54
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 2 cut(s) 58, 123
Sau96I GGNCC 2 cut(s) 130, 465
ScrFI CCNGG 3 cut(s) 54, 134, 463
SduI GDGCHC 2 cut(s) 152, 382
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 3 cut(s) 176, 280, 410
SspMI CTAG 3 cut(s) 209, 353, 487
StyD4I CCNGG 3 cut(s) 52, 132, 461
TaaI ACNGT 2 cut(s) 7, 254
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 193
TasI AATT 3 cut(s) 176, 280, 410
TfiI GAWTC 1 cut(s) 269
TseFI GTSAC 2 cut(s) 224, 248
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 2 cut(s) 224, 248
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 465
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 3 cut(s) 209, 353, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.