Rh7CG413700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019043
Physical Location & Seq
Reverse (-)
53118377 .. 53119331
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG413700.1

Sequence Viewer

Length: 642 bp
ATGGGTGGTCGTCTAATTGTCACAACTATCCTCACCTTCAGCTTGTTCACCATCATCATCCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACAACTTACACATTGGGTTTTACGCTTTGAGTTGCCCCAAGGTTGAGGACATTGTTGCCGAGGTTGTGGCCCGTGGTTGTGATGCCTCGATCCTGTTAGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGCCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTTCCCCCAAACTGTTTCATGCACTGACATATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATTTCAACCTCCCTACACCTGTAACACCTCTGAAAGACATTACAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTCGTCCGGTGCACACTCCATTGGCAAAGCACAATGCACCCAATTGAAGACAAACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

213

Amino Acids

23.06

Weight (kDa)

5.43

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 54 - 194 4.5e-41 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 197
AclWI GGATC 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 22
AcvI CACGTG 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 615
AflIII ACRYGT 1 cut(s) 480
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 2 cut(s) 439, 568
AjnI CCWGG 2 cut(s) 285, 614
AluBI AGCT 3 cut(s) 42, 595, 639
AluI AGCT 3 cut(s) 42, 595, 639
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 526, 599
Alw44I GTGCAC 1 cut(s) 531
AlwI GGATC 1 cut(s) 178
Ama87I CYCGRG 2 cut(s) 345, 602
AoxI GGCC 5 cut(s) 72, 162, 256, 282, 367
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 341
AsiGI ACCGGT 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 163, 283, 618
AsuHPI GGTGA 4 cut(s) 25, 40, 221, 222
AvaI CYCGRG 2 cut(s) 345, 602
AvaII GGWCC 1 cut(s) 618
BaeGI GKGCMC 1 cut(s) 535
BbrPI CACGTG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 59, 211
BceAI ACGGC 2 cut(s) 338, 384
BciT130I CCWGG 2 cut(s) 287, 616
BcoDI GTCTC 2 cut(s) 526, 599
BfaI CTAG 3 cut(s) 362, 506, 640
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 342
BlpI GCTNAGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 287, 616
Bme18I GGWCC 1 cut(s) 618
BmeT110I CYCGRG 2 cut(s) 345, 602
BmgT120I GGNCC 3 cut(s) 163, 283, 618
BmiI GGNNCC 1 cut(s) 620
BmrFI CCNGG 2 cut(s) 287, 616
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 7 cut(s) 69, 75, 132, 153, 166, 285, 614
BsaWI WCCGGW 2 cut(s) 392, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 615
Bse118I RCCGGY 2 cut(s) 365, 392
BseBI CCWGG 2 cut(s) 287, 616
BseDI CCNNGG 7 cut(s) 69, 75, 132, 153, 166, 285, 614
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 615
BseMII CTCAG 1 cut(s) 610
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 5 cut(s) 74, 164, 258, 284, 369
BshTI ACCGGT 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 2 cut(s) 345, 602
BsiSI CCGG 3 cut(s) 366, 393, 528
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 615
BsmAI GTCTC 2 cut(s) 526, 599
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 5 cut(s) 74, 164, 258, 284, 369
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 2 cut(s) 345, 602
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 2 cut(s) 183, 276
Bsp1720I GCTNAGC 1 cut(s) 596
BspANI GGCC 5 cut(s) 74, 164, 258, 284, 369
BspCNI CTCAG 1 cut(s) 609
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 620
BspPI GGATC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 599
BsrFI RCCGGY 2 cut(s) 365, 392
BssAI RCCGGY 2 cut(s) 365, 392
BssECI CCNNGG 7 cut(s) 69, 75, 132, 153, 166, 285, 614
BssMI GATC 2 cut(s) 183, 276
BssT1I CCWWGG 2 cut(s) 75, 132
Bst2UI CCWGG 2 cut(s) 287, 616
Bst4CI ACNGT 2 cut(s) 313, 407
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 596
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 2 cut(s) 186, 279
BstMAI GTCTC 2 cut(s) 526, 599
BstMBI GATC 2 cut(s) 183, 276
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 341, 350
BstNI CCWGG 2 cut(s) 287, 616
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 285, 614
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 535
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 575
BsuRI GGCC 5 cut(s) 74, 164, 258, 284, 369
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 367
Cfr10I RCCGGY 2 cut(s) 365, 392
Cfr13I GGNCC 3 cut(s) 163, 283, 618
CseI GACGC 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 2 cut(s) 318, 481
DdeI CTNAG 1 cut(s) 596
DpnI GATC 2 cut(s) 185, 278
DpnII GATC 2 cut(s) 183, 276
Eco130I CCWWGG 2 cut(s) 75, 132
Eco147I AGGCCT 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 618
Eco57I CTGAAG 1 cut(s) 22
Eco72I CACGTG 1 cut(s) 419
Eco88I CYCGRG 2 cut(s) 345, 602
EcoRII CCWGG 2 cut(s) 285, 614
EcoT14I CCWWGG 2 cut(s) 75, 132
ErhI CCWWGG 2 cut(s) 75, 132
FaeI CATG 2 cut(s) 321, 484
FaiI YATR 8 cut(s) 218, 319, 329, 482, 515, 579, 587, 629
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 317, 480
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 3 cut(s) 362, 506, 640
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 5 cut(s) 74, 164, 258, 284, 369
HapII CCGG 3 cut(s) 366, 393, 528
HgaI GACGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 321, 484
HpaII CCGG 3 cut(s) 366, 393, 528
HphI GGTGA 4 cut(s) 25, 40, 221, 222
Hpy166II GTNNAC 3 cut(s) 48, 358, 533
Hpy188I TCNGA 3 cut(s) 70, 427, 465
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 3 cut(s) 48, 358, 533
HpyAV CCTTC 4 cut(s) 46, 71, 77, 620
HpyCH4III ACNGT 2 cut(s) 313, 407
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 321, 533, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 350
HpyF3I CTNAG 1 cut(s) 596
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 2 cut(s) 321, 484
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 183, 276
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 166
MaeI CTAG 3 cut(s) 362, 506, 640
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 4 cut(s) 19, 377, 401, 454
MalI GATC 2 cut(s) 185, 278
MboI GATC 2 cut(s) 183, 276
MboII GAAGA 2 cut(s) 521, 580
MfeI CAATTG 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 3 cut(s) 15, 433, 563
MnlI CCTC 9 cut(s) 41, 64, 76, 133, 148, 190, 248, 452, 471
MroNI GCCGGC 1 cut(s) 365
MspI CCGG 3 cut(s) 366, 393, 528
MspR9I CCNGG 2 cut(s) 287, 616
MunI CAATTG 1 cut(s) 563
MvaI CCWGG 2 cut(s) 287, 616
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 341, 350
NaeI GCCGGC 1 cut(s) 367
NdeII GATC 2 cut(s) 183, 276
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 2 cut(s) 321, 484
NlaIV GGNNCC 1 cut(s) 620
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 3 cut(s) 19, 377, 401
NspI RCATGY 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 258
PciI ACATGT 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 1 cut(s) 343
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 419
PscI ACATGT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 285, 614
PspCI CACGTG 1 cut(s) 419
PspGI CCWGG 2 cut(s) 285, 614
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 3 cut(s) 163, 283, 618
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 183, 276
Sau96I GGNCC 3 cut(s) 163, 283, 618
ScrFI CCNGG 2 cut(s) 287, 616
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 618
SlaI CTCGAG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 3 cut(s) 15, 433, 563
SseBI AGGCCT 1 cut(s) 258
SspMI CTAG 3 cut(s) 362, 506, 640
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 285, 614
StyI CCWWGG 2 cut(s) 75, 132
TaaI ACNGT 2 cut(s) 313, 407
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 182, 346
TasI AATT 3 cut(s) 15, 433, 563
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 3 cut(s) 19, 377, 401
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 3 cut(s) 19, 377, 401
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 328
VneI GTGCAC 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 618
XceI RCATGY 1 cut(s) 484
XhoI CTCGAG 1 cut(s) 345
XspI CTAG 3 cut(s) 362, 506, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.