Rh7DG390600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019043
Physical Location & Seq
Reverse (-)
53452528 .. 53453484
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG390600.1

Sequence Viewer

Length: 699 bp
ATGGGTGGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCCTTCCCTCCGAGGCTAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTATGCATGAGGGAGATCCAAGCTCCCTCCTGCCCTCATTCGCCTCTTTTTCCATGACTGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTGGTGATCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGTCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTTTCCTGCGCTGACAAATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACCGGTCGCCGTGACAGTAGGACTTTCCGTGCTTCTGATGTCAATTTCAACGTCCCTACACCTGTAACGCCTCTGAAAGACATTACAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTCGTCCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAATTGAAGACAGACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

232

Amino Acids

24.92

Weight (kDa)

5.01

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 69 - 212 2.6e-40 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 254
AciI CCGC 1 cut(s) 21
AclWI GGATC 3 cut(s) 176, 235, 263
AfiI CCNNNNNNNGG 1 cut(s) 672
AflIII ACRYGT 2 cut(s) 103, 537
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 2 cut(s) 496, 625
AjnI CCWGG 2 cut(s) 342, 671
AluBI AGCT 3 cut(s) 189, 652, 696
AluI AGCT 3 cut(s) 189, 652, 696
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 2 cut(s) 583, 656
Alw44I GTGCAC 1 cut(s) 588
AlwI GGATC 3 cut(s) 176, 235, 263
Ama87I CYCGRG 2 cut(s) 402, 659
AoxI GGCC 3 cut(s) 162, 339, 424
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 398
AsiGI ACCGGT 1 cut(s) 449
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 163, 340, 675
AsuHPI GGTGA 5 cut(s) 25, 31, 40, 278, 279
AvaI CYCGRG 2 cut(s) 402, 659
AvaII GGWCC 1 cut(s) 675
BaeGI GKGCMC 2 cut(s) 362, 592
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 592
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 59, 268
BceAI ACGGC 3 cut(s) 112, 395, 441
BciT130I CCWGG 2 cut(s) 344, 673
BcoDI GTCTC 2 cut(s) 583, 656
BfaI CTAG 3 cut(s) 419, 563, 697
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 21, 399
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 2 cut(s) 22, 400
Bme1390I CCNGG 2 cut(s) 344, 673
Bme18I GGWCC 1 cut(s) 675
BmeT110I CYCGRG 2 cut(s) 402, 659
BmgT120I GGNCC 3 cut(s) 163, 340, 675
BmiI GGNNCC 1 cut(s) 677
BmrFI CCNGG 2 cut(s) 344, 673
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 632
Bpu10I CCTNAGC 2 cut(s) 75, 153
Bpu1102I GCTNAGC 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 4 cut(s) 69, 132, 342, 671
BsaWI WCCGGW 2 cut(s) 449, 584
Bsc4I CCNNNNNNNGG 1 cut(s) 672
Bse118I RCCGGY 2 cut(s) 422, 449
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 344, 673
BseDI CCNNGG 4 cut(s) 69, 132, 342, 671
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 672
BseMII CTCAG 2 cut(s) 144, 667
BseNI ACTGG 1 cut(s) 229
BseSI GKGCMC 2 cut(s) 362, 592
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 3 cut(s) 164, 341, 426
BshTI ACCGGT 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 2 cut(s) 402, 659
BsiSI CCGG 3 cut(s) 423, 450, 585
BslFI GGGAC 2 cut(s) 428, 485
BslI CCNNNNNNNGG 1 cut(s) 672
BsmAI GTCTC 2 cut(s) 583, 656
BsmFI GGGAC 2 cut(s) 428, 485
BsnI GGCC 3 cut(s) 164, 341, 426
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 2 cut(s) 402, 659
Bsp1286I GDGCHC 2 cut(s) 362, 592
Bsp143I GATC 4 cut(s) 181, 240, 268, 333
Bsp1720I GCTNAGC 1 cut(s) 653
BspACI CCGC 1 cut(s) 21
BspANI GGCC 3 cut(s) 164, 341, 426
BspCNI CTCAG 2 cut(s) 145, 666
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 677
BspPI GGATC 3 cut(s) 176, 235, 263
BspTNI GGTCTC 1 cut(s) 656
BsrFI RCCGGY 2 cut(s) 422, 449
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 2 cut(s) 422, 449
BssECI CCNNGG 4 cut(s) 69, 132, 342, 671
BssMI GATC 4 cut(s) 181, 240, 268, 333
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 344, 673
Bst4CI ACNGT 2 cut(s) 370, 464
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 3 cut(s) 75, 153, 653
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 4 cut(s) 184, 243, 271, 336
BstMAI GTCTC 2 cut(s) 583, 656
BstMBI GATC 4 cut(s) 181, 240, 268, 333
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 2 cut(s) 398, 407
BstNI CCWGG 2 cut(s) 344, 673
BstNSI RCATGY 2 cut(s) 107, 541
BstSCI CCNGG 2 cut(s) 342, 671
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 362, 592
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 3 cut(s) 164, 341, 426
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 424
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 2 cut(s) 422, 449
Cfr13I GGNCC 3 cut(s) 163, 340, 675
CseI GACGC 1 cut(s) 260
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 4 cut(s) 104, 173, 220, 538
DdeI CTNAG 3 cut(s) 75, 153, 653
DpnI GATC 4 cut(s) 183, 242, 270, 335
DpnII GATC 4 cut(s) 181, 240, 268, 333
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 675
Eco88I CYCGRG 2 cut(s) 402, 659
EcoRII CCWGG 2 cut(s) 342, 671
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 4 cut(s) 107, 176, 223, 541
FaqI GGGAC 2 cut(s) 428, 485
FatI CATG 4 cut(s) 103, 172, 219, 537
Fnu4HI GCNGC 2 cut(s) 21, 399
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 21, 399
FspBI CTAG 3 cut(s) 419, 563, 697
GlaI GCGC 1 cut(s) 379
GluI GCNGC 2 cut(s) 21, 399
HaeIII GGCC 3 cut(s) 164, 341, 426
HapII CCGG 3 cut(s) 423, 450, 585
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 380
Hin1II CATG 4 cut(s) 107, 176, 223, 541
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HpaII CCGG 3 cut(s) 423, 450, 585
HphI GGTGA 5 cut(s) 25, 31, 40, 278, 279
Hpy166II GTNNAC 3 cut(s) 48, 415, 590
Hpy188I TCNGA 3 cut(s) 70, 484, 522
Hpy188III TCNNGA 2 cut(s) 317, 404
Hpy8I GTNNAC 3 cut(s) 48, 415, 590
HpyAV CCTTC 4 cut(s) 46, 71, 77, 677
HpyCH4III ACNGT 2 cut(s) 370, 464
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 3 cut(s) 172, 590, 615
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 407
HpyF3I CTNAG 3 cut(s) 75, 153, 653
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 4 cut(s) 107, 176, 223, 541
HspAI GCGC 1 cut(s) 378
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 181, 240, 268, 333
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 223
MaeI CTAG 3 cut(s) 419, 563, 697
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 3 cut(s) 434, 458, 511
MalI GATC 4 cut(s) 183, 242, 270, 335
MboI GATC 4 cut(s) 181, 240, 268, 333
MboII GAAGA 2 cut(s) 578, 637
MfeI CAATTG 1 cut(s) 620
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 362, 592
MluCI AATT 4 cut(s) 15, 386, 490, 620
MmeI TCCRAC 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 174
MroNI GCCGGC 1 cut(s) 422
MspI CCGG 3 cut(s) 423, 450, 585
MspR9I CCNGG 2 cut(s) 344, 673
MunI CAATTG 1 cut(s) 620
MvaI CCWGG 2 cut(s) 344, 673
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 398, 407
NaeI GCCGGC 1 cut(s) 424
NdeII GATC 4 cut(s) 181, 240, 268, 333
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 4 cut(s) 107, 176, 223, 541
NlaIV GGNNCC 1 cut(s) 677
NmuCI GTSAC 2 cut(s) 434, 458
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 2 cut(s) 107, 541
PaeR7I CTCGAG 1 cut(s) 402
PciI ACATGT 2 cut(s) 103, 537
PdiI GCCGGC 1 cut(s) 424
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 2 cut(s) 22, 400
PscI ACATGT 2 cut(s) 103, 537
Psp6I CCWGG 2 cut(s) 342, 671
PspGI CCWGG 2 cut(s) 342, 671
PspN4I GGNNCC 1 cut(s) 677
PspPI GGNCC 3 cut(s) 163, 340, 675
PsuI RGATCY 1 cut(s) 181
SatI GCNGC 2 cut(s) 21, 399
Sau3AI GATC 4 cut(s) 181, 240, 268, 333
Sau96I GGNCC 3 cut(s) 163, 340, 675
ScrFI CCNGG 2 cut(s) 344, 673
SduI GDGCHC 2 cut(s) 362, 592
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 675
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 4 cut(s) 15, 386, 490, 620
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 419, 563, 697
StyD4I CCNGG 2 cut(s) 342, 671
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 370, 464
TaiI ACGT 1 cut(s) 501
TaqI TCGA 3 cut(s) 122, 239, 403
TasI AATT 4 cut(s) 15, 386, 490, 620
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 2 cut(s) 434, 458
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 434, 458
TspGWI ACGGA 1 cut(s) 464
VneI GTGCAC 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 675
XceI RCATGY 2 cut(s) 107, 541
XhoI CTCGAG 1 cut(s) 402
XspI CTAG 3 cut(s) 419, 563, 697
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.