Rmu_co8376935.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8376935.1
OG0019043
Physical Location & Seq
Forward (+)
76 .. 1032
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8376935.1_g000001.1.cds

Sequence Viewer

Length: 630 bp
atgggtggtcgtctaattgccgcaactatcctcaccttcaccttgttcaccatcatcatccttccctccgaggctaagggagaaggcaaagggaacggcttacatgttgggttttacgcttcgagttgccccaaggttgaggacattgttgctgagggttgtgatgcctcgatcctgttggacgcgacaccatctggtgatcctatagagaaaacatcaccagccaatagtgaaacacaaagaggtcttgatgttattgatgagatcaaggcccaggtagagcaggagtgcccccaaactgtttcctgcgctgacaaattagcatttgctgctcgagaagccgtttacctagccggcctaccccgtcacaatgtcccaaccggtcgccgtgacagtaggactttccgtgcttctaatgtcaatttcaacgtccctacacctgtaacgcctctgaaagacattacagacatgttcggcaggagaaatcccacactagaagatatggttgtctcgtccggtgcacactccattggcgaagcacaatgcacccaattgaagacagactatacaaatatagcaaagctcagccccgagacccttccctggacccaacctatgctgatgagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

209

Amino Acids

22.47

Weight (kDa)

5.1

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 166, 194
AfiI CCNNNNNNNGG 1 cut(s) 603
AflIII ACRYGT 2 cut(s) 103, 468
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 2 cut(s) 427, 556
AjnI CCWGG 2 cut(s) 273, 602
AluBI AGCT 2 cut(s) 583, 627
AluI AGCT 2 cut(s) 583, 627
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 514, 587
Alw44I GTGCAC 1 cut(s) 519
AlwI GGATC 2 cut(s) 166, 194
Ama87I CYCGRG 2 cut(s) 333, 590
AoxI GGCC 2 cut(s) 270, 355
ApaLI GTGCAC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 329
AsiGI ACCGGT 1 cut(s) 380
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 271, 606
AsuHPI GGTGA 5 cut(s) 25, 31, 40, 209, 210
AvaI CYCGRG 2 cut(s) 333, 590
AvaII GGWCC 1 cut(s) 606
BaeGI GKGCMC 2 cut(s) 293, 523
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 59, 199
BceAI ACGGC 3 cut(s) 112, 326, 372
BciT130I CCWGG 2 cut(s) 275, 604
BcoDI GTCTC 2 cut(s) 514, 587
BfaI CTAG 3 cut(s) 350, 494, 628
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 21, 330
BlpI GCTNAGC 1 cut(s) 584
BlsI GCNGC 2 cut(s) 22, 331
Bme1390I CCNGG 2 cut(s) 275, 604
Bme18I GGWCC 1 cut(s) 606
BmeT110I CYCGRG 2 cut(s) 333, 590
BmgT120I GGNCC 2 cut(s) 271, 606
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 2 cut(s) 275, 604
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 563
Bpu10I CCTNAGC 2 cut(s) 75, 153
Bpu1102I GCTNAGC 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 4 cut(s) 69, 132, 273, 602
BsaWI WCCGGW 2 cut(s) 380, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse118I RCCGGY 2 cut(s) 353, 380
BseBI CCWGG 2 cut(s) 275, 604
BseDI CCNNGG 4 cut(s) 69, 132, 273, 602
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 144, 598
BseSI GKGCMC 2 cut(s) 293, 523
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 272, 357
BshTI ACCGGT 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 2 cut(s) 333, 590
BsiSI CCGG 3 cut(s) 354, 381, 516
BslFI GGGAC 2 cut(s) 359, 416
BslI CCNNNNNNNGG 1 cut(s) 603
BsmAI GTCTC 2 cut(s) 514, 587
BsmFI GGGAC 2 cut(s) 359, 416
BsnI GGCC 2 cut(s) 272, 357
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 2 cut(s) 333, 590
Bsp1286I GDGCHC 2 cut(s) 293, 523
Bsp143I GATC 3 cut(s) 171, 199, 264
Bsp1720I GCTNAGC 1 cut(s) 584
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 272, 357
BspCNI CTCAG 2 cut(s) 145, 597
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 608
BspPI GGATC 2 cut(s) 166, 194
BspTNI GGTCTC 1 cut(s) 587
BsrFI RCCGGY 2 cut(s) 353, 380
BssAI RCCGGY 2 cut(s) 353, 380
BssECI CCNNGG 4 cut(s) 69, 132, 273, 602
BssMI GATC 3 cut(s) 171, 199, 264
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 275, 604
Bst4CI ACNGT 2 cut(s) 301, 395
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 3 cut(s) 75, 153, 584
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 3 cut(s) 174, 202, 267
BstMAI GTCTC 2 cut(s) 514, 587
BstMBI GATC 3 cut(s) 171, 199, 264
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 329, 338
BstNI CCWGG 2 cut(s) 275, 604
BstNSI RCATGY 2 cut(s) 107, 472
BstSCI CCNGG 2 cut(s) 273, 602
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 2 cut(s) 293, 523
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 272, 357
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 2 cut(s) 353, 380
Cfr13I GGNCC 2 cut(s) 271, 606
CseI GACGC 1 cut(s) 191
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 2 cut(s) 104, 469
DdeI CTNAG 3 cut(s) 75, 153, 584
DpnI GATC 3 cut(s) 173, 201, 266
DpnII GATC 3 cut(s) 171, 199, 264
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 606
Eco88I CYCGRG 2 cut(s) 333, 590
EcoRII CCWGG 2 cut(s) 273, 602
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 107, 472
FaiI YATR 7 cut(s) 105, 206, 470, 503, 567, 575, 617
FaqI GGGAC 2 cut(s) 359, 416
FatI CATG 2 cut(s) 103, 468
Fnu4HI GCNGC 2 cut(s) 21, 330
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 21, 330
FspBI CTAG 3 cut(s) 350, 494, 628
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 21, 330
HaeIII GGCC 2 cut(s) 272, 357
HapII CCGG 3 cut(s) 354, 381, 516
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 311
Hin1II CATG 2 cut(s) 107, 472
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HpaII CCGG 3 cut(s) 354, 381, 516
HphI GGTGA 5 cut(s) 25, 31, 40, 209, 210
Hpy166II GTNNAC 3 cut(s) 48, 346, 521
Hpy188I TCNGA 2 cut(s) 70, 453
Hpy188III TCNNGA 2 cut(s) 248, 335
Hpy8I GTNNAC 3 cut(s) 48, 346, 521
HpyAV CCTTC 4 cut(s) 46, 71, 77, 608
HpyCH4III ACNGT 2 cut(s) 301, 395
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 2 cut(s) 521, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 338
HpyF3I CTNAG 3 cut(s) 75, 153, 584
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 107, 472
HspAI GCGC 1 cut(s) 309
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Kzo9I GATC 3 cut(s) 171, 199, 264
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 154
MaeI CTAG 3 cut(s) 350, 494, 628
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 365, 389, 442
MalI GATC 3 cut(s) 173, 201, 266
MboI GATC 3 cut(s) 171, 199, 264
MboII GAAGA 2 cut(s) 509, 568
MfeI CAATTG 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 293, 523
MluCI AATT 4 cut(s) 15, 317, 421, 551
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 41, 64, 76, 133, 148, 178, 236, 459
MroNI GCCGGC 1 cut(s) 353
MspI CCGG 3 cut(s) 354, 381, 516
MspR9I CCNGG 2 cut(s) 275, 604
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 2 cut(s) 275, 604
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 329, 338
NaeI GCCGGC 1 cut(s) 355
NdeII GATC 3 cut(s) 171, 199, 264
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 2 cut(s) 107, 472
NlaIV GGNNCC 1 cut(s) 608
NmuCI GTSAC 2 cut(s) 365, 389
NspI RCATGY 2 cut(s) 107, 472
PaeR7I CTCGAG 1 cut(s) 333
PciI ACATGT 2 cut(s) 103, 468
PdiI GCCGGC 1 cut(s) 355
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 2 cut(s) 22, 331
PscI ACATGT 2 cut(s) 103, 468
Psp6I CCWGG 2 cut(s) 273, 602
PspGI CCWGG 2 cut(s) 273, 602
PspN4I GGNNCC 1 cut(s) 608
PspPI GGNCC 2 cut(s) 271, 606
SatI GCNGC 2 cut(s) 21, 330
Sau3AI GATC 3 cut(s) 171, 199, 264
Sau96I GGNCC 2 cut(s) 271, 606
ScrFI CCNGG 2 cut(s) 275, 604
SduI GDGCHC 2 cut(s) 293, 523
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 4 cut(s) 15, 317, 421, 551
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 350, 494, 628
StyD4I CCNGG 2 cut(s) 273, 602
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 301, 395
TaiI ACGT 1 cut(s) 432
TaqI TCGA 3 cut(s) 122, 170, 334
TasI AATT 4 cut(s) 15, 317, 421, 551
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 2 cut(s) 365, 389
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 2 cut(s) 365, 389
TspGWI ACGGA 1 cut(s) 395
VneI GTGCAC 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 606
XceI RCATGY 2 cut(s) 107, 472
XhoI CTCGAG 1 cut(s) 333
XspI CTAG 3 cut(s) 350, 494, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.