Rh7CG413600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019043
Physical Location & Seq
Reverse (-)
53086488 .. 53087442
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG413600.1

Sequence Viewer

Length: 672 bp
ATGGGTGGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTACTGAGGTTGTGGGCCGTGTGCATGAGCGAGATCCAAGCTCCCTCCTGCCCTCCTCCGCCTCTTTTTCCATGACTACGCGACACCCTGGTGATCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGTCTTGATGTTGTTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTTTCCTGCGCTGACAAATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACCGGTCGCCGTGACAGTAGGACTTCATGTGCTTCTAATGTCAATTTCAACCTCCCTACACCTGTAACTCCTCTGAAAGACATTACAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTTGTTCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAATTGAACACAGACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

223

Amino Acids

24.14

Weight (kDa)

5.55

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 81 - 202 2.2e-36 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 229
AciI CCGC 2 cut(s) 21, 207
AclWI GGATC 2 cut(s) 176, 236
AfiI CCNNNNNNNGG 1 cut(s) 645
AflIII ACRYGT 2 cut(s) 103, 510
AgeI ACCGGT 1 cut(s) 422
AgsI TTSAA 2 cut(s) 469, 598
AjnI CCWGG 3 cut(s) 235, 315, 644
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 3 cut(s) 189, 625, 669
AluI AGCT 3 cut(s) 189, 625, 669
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 1 cut(s) 629
Alw44I GTGCAC 1 cut(s) 561
AlwI GGATC 2 cut(s) 176, 236
Ama87I CYCGRG 2 cut(s) 375, 632
AoxI GGCC 4 cut(s) 72, 163, 312, 397
ApaLI GTGCAC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 371
AsiGI ACCGGT 1 cut(s) 422
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 163, 313, 648
AsuHPI GGTGA 5 cut(s) 25, 31, 40, 251, 252
AvaI CYCGRG 2 cut(s) 375, 632
AvaII GGWCC 1 cut(s) 648
BaeGI GKGCMC 2 cut(s) 335, 565
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 59
BceAI ACGGC 4 cut(s) 112, 150, 368, 414
BciT130I CCWGG 3 cut(s) 237, 317, 646
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 3 cut(s) 392, 536, 670
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 21, 372
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 2 cut(s) 22, 373
Bme1390I CCNGG 3 cut(s) 237, 317, 646
Bme18I GGWCC 1 cut(s) 648
BmeT110I CYCGRG 2 cut(s) 375, 632
BmgT120I GGNCC 3 cut(s) 163, 313, 648
BmiI GGNNCC 1 cut(s) 650
BmrFI CCNGG 3 cut(s) 237, 317, 646
Bpu1102I GCTNAGC 1 cut(s) 626
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 6 cut(s) 69, 75, 132, 235, 315, 644
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 645
Bse118I RCCGGY 2 cut(s) 395, 422
BseBI CCWGG 3 cut(s) 237, 317, 646
BseDI CCNNGG 6 cut(s) 69, 75, 132, 235, 315, 644
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 144, 640
BseRI GAGGAG 2 cut(s) 193, 480
BseSI GKGCMC 2 cut(s) 335, 565
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 4 cut(s) 74, 165, 314, 399
BshTI ACCGGT 1 cut(s) 422
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 2 cut(s) 375, 632
BsiSI CCGG 2 cut(s) 396, 423
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 645
BsmAI GTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 4 cut(s) 74, 165, 314, 399
Bso31I GGTCTC 1 cut(s) 629
BsoBI CYCGRG 2 cut(s) 375, 632
Bsp1286I GDGCHC 2 cut(s) 335, 565
Bsp143I GATC 3 cut(s) 181, 241, 306
Bsp1720I GCTNAGC 1 cut(s) 626
BspACI CCGC 2 cut(s) 21, 207
BspANI GGCC 4 cut(s) 74, 165, 314, 399
BspCNI CTCAG 2 cut(s) 145, 639
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 650
BspPI GGATC 2 cut(s) 176, 236
BspTNI GGTCTC 1 cut(s) 629
BsrFI RCCGGY 2 cut(s) 395, 422
BssAI RCCGGY 2 cut(s) 395, 422
BssECI CCNNGG 6 cut(s) 69, 75, 132, 235, 315, 644
BssMI GATC 3 cut(s) 181, 241, 306
BssT1I CCWWGG 2 cut(s) 75, 132
Bst2UI CCWGG 3 cut(s) 237, 317, 646
Bst4CI ACNGT 2 cut(s) 343, 437
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 153, 626
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 3 cut(s) 184, 244, 309
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 3 cut(s) 181, 241, 306
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 2 cut(s) 371, 380
BstNI CCWGG 3 cut(s) 237, 317, 646
BstNSI RCATGY 2 cut(s) 107, 514
BstSCI CCNGG 3 cut(s) 235, 315, 644
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 2 cut(s) 335, 565
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 4 cut(s) 74, 165, 314, 399
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 397
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 2 cut(s) 395, 422
Cfr13I GGNCC 3 cut(s) 163, 313, 648
CspAI ACCGGT 1 cut(s) 422
CviAII CATG 5 cut(s) 104, 173, 220, 447, 511
DdeI CTNAG 2 cut(s) 153, 626
DpnI GATC 3 cut(s) 183, 243, 308
DpnII GATC 3 cut(s) 181, 241, 306
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 75, 132
Eco31I GGTCTC 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 648
Eco88I CYCGRG 2 cut(s) 375, 632
EcoRII CCWGG 3 cut(s) 235, 315, 644
EcoT14I CCWWGG 2 cut(s) 75, 132
ErhI CCWWGG 2 cut(s) 75, 132
FaeI CATG 5 cut(s) 107, 176, 223, 450, 514
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 103, 172, 219, 446, 510
Fnu4HI GCNGC 2 cut(s) 21, 372
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 21, 372
FspBI CTAG 3 cut(s) 392, 536, 670
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 21, 372
HaeIII GGCC 4 cut(s) 74, 165, 314, 399
HapII CCGG 2 cut(s) 396, 423
HhaI GCGC 1 cut(s) 353
Hin1II CATG 5 cut(s) 107, 176, 223, 450, 514
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HpaII CCGG 2 cut(s) 396, 423
HphI GGTGA 5 cut(s) 25, 31, 40, 251, 252
Hpy166II GTNNAC 3 cut(s) 48, 388, 563
Hpy188I TCNGA 2 cut(s) 70, 495
Hpy188III TCNNGA 2 cut(s) 290, 377
Hpy8I GTNNAC 3 cut(s) 48, 388, 563
HpyAV CCTTC 4 cut(s) 46, 71, 77, 650
HpyCH4III ACNGT 2 cut(s) 343, 437
HpyCH4V TGCA 3 cut(s) 172, 563, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 380
HpyF3I CTNAG 2 cut(s) 153, 626
Hsp92II CATG 5 cut(s) 107, 176, 223, 450, 514
HspAI GCGC 1 cut(s) 351
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Kzo9I GATC 3 cut(s) 181, 241, 306
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 3 cut(s) 392, 536, 670
MaeIII GTNAC 4 cut(s) 148, 407, 431, 484
MalI GATC 3 cut(s) 183, 243, 308
MboI GATC 3 cut(s) 181, 241, 306
MboII GAAGA 1 cut(s) 551
MfeI CAATTG 1 cut(s) 593
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 335, 565
MluCI AATT 4 cut(s) 15, 359, 463, 593
MroNI GCCGGC 1 cut(s) 395
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 2 cut(s) 396, 423
MspR9I CCNGG 3 cut(s) 237, 317, 646
MunI CAATTG 1 cut(s) 593
MvaI CCWGG 3 cut(s) 237, 317, 646
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 371, 380
NaeI GCCGGC 1 cut(s) 397
NdeII GATC 3 cut(s) 181, 241, 306
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 5 cut(s) 107, 176, 223, 450, 514
NlaIV GGNNCC 1 cut(s) 650
NmuCI GTSAC 2 cut(s) 407, 431
NspI RCATGY 2 cut(s) 107, 514
OliI CACNNNNGTG 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 375
PciI ACATGT 2 cut(s) 103, 510
PdiI GCCGGC 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 422
PkrI GCNGC 2 cut(s) 22, 373
PscI ACATGT 2 cut(s) 103, 510
Psp6I CCWGG 3 cut(s) 235, 315, 644
PspGI CCWGG 3 cut(s) 235, 315, 644
PspN4I GGNNCC 1 cut(s) 650
PspPI GGNCC 3 cut(s) 163, 313, 648
PsuI RGATCY 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 2 cut(s) 21, 372
Sau3AI GATC 3 cut(s) 181, 241, 306
Sau96I GGNCC 3 cut(s) 163, 313, 648
ScrFI CCNGG 3 cut(s) 237, 317, 646
SduI GDGCHC 2 cut(s) 335, 565
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 648
SlaI CTCGAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
Sse9I AATT 4 cut(s) 15, 359, 463, 593
SsiI CCGC 2 cut(s) 21, 207
SspMI CTAG 3 cut(s) 392, 536, 670
StyD4I CCNGG 3 cut(s) 235, 315, 644
StyI CCWWGG 2 cut(s) 75, 132
TaaI ACNGT 2 cut(s) 343, 437
TaqI TCGA 2 cut(s) 122, 376
TasI AATT 4 cut(s) 15, 359, 463, 593
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 2 cut(s) 407, 431
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 407, 431
TspDTI ATGAA 1 cut(s) 435
VneI GTGCAC 1 cut(s) 561
VpaK11BI GGWCC 1 cut(s) 648
XceI RCATGY 2 cut(s) 107, 514
XhoI CTCGAG 1 cut(s) 375
XspI CTAG 3 cut(s) 392, 536, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.