Rmu_co8327697.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8327697.1
OG0019043
Physical Location & Seq
Forward (+)
349 .. 849
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8327697.1_g000001.1.cds

Sequence Viewer

Length: 501 bp
atgtttaacaattcatgtgtgcaacagggttgtgatgcctcgatcctgttggacgcgacaccatctggtgagcctatagagaaaacatcaccagccaatagtgaaacacaaagaggctttgatgttattgatgagatcaaggcccaggtagagcaggggtgcccccaaactgtttcctgcactgacatattagcatttgctgctcgagaagccgtttacctagccggcctaccccgtcacaatgtcccaatcggtcgccgtgacagtaggacttcacgtgcttctgatgtcaatttcaacctccctacacctgtaacacctctgaaagacattacagacatgtttggcaggagaaatcccacactagaagatatggttgtctcgtccggtgcacactccattggcgaagcacaatgcacccaattgaacacagactatacaaatatagcaaagctcaaccccgagacccttccctggacccaacctatgctgatgagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

166

Amino Acids

18.07

Weight (kDa)

4.72

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AccII CGCG 1 cut(s) 56
AclWI GGATC 1 cut(s) 37
AcvI CACGTG 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 474
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 298, 427
AjnI CCWGG 2 cut(s) 144, 473
AluBI AGCT 2 cut(s) 454, 498
AluI AGCT 2 cut(s) 454, 498
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 385, 458
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 1 cut(s) 37
Ama87I CYCGRG 2 cut(s) 204, 461
AoxI GGCC 2 cut(s) 141, 226
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 142, 477
AsuHPI GGTGA 2 cut(s) 80, 81
AvaI CYCGRG 2 cut(s) 204, 461
AvaII GGWCC 1 cut(s) 477
BaeGI GKGCMC 2 cut(s) 164, 394
BanI GGYRCC 1 cut(s) 159
BbrPI CACGTG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 197, 243
BciT130I CCWGG 2 cut(s) 146, 475
BcoDI GTCTC 2 cut(s) 385, 458
BfaI CTAG 3 cut(s) 221, 365, 499
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 146, 475
Bme18I GGWCC 1 cut(s) 477
BmeT110I CYCGRG 2 cut(s) 204, 461
BmgT120I GGNCC 2 cut(s) 142, 477
BmiI GGNNCC 2 cut(s) 161, 479
BmrFI CCNGG 2 cut(s) 146, 475
BmsI GCATC 1 cut(s) 25
BsaAI YACGTR 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 2 cut(s) 144, 473
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 224
BseBI CCWGG 2 cut(s) 146, 475
BseDI CCNNGG 2 cut(s) 144, 473
BseLI CCNNNNNNNGG 1 cut(s) 474
BseSI GKGCMC 2 cut(s) 164, 394
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 143, 228
BshNI GGYRCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 2 cut(s) 204, 461
BsiSI CCGG 2 cut(s) 225, 387
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 385, 458
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 2 cut(s) 143, 228
Bso31I GGTCTC 1 cut(s) 458
BsoBI CYCGRG 2 cut(s) 204, 461
Bsp1286I GDGCHC 2 cut(s) 164, 394
Bsp143I GATC 2 cut(s) 42, 135
BspANI GGCC 2 cut(s) 143, 228
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 161, 479
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 458
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 144, 473
BssMI GATC 2 cut(s) 42, 135
Bst2UI CCWGG 2 cut(s) 146, 475
Bst4CI ACNGT 2 cut(s) 172, 266
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 226
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 2 cut(s) 45, 138
BstMAI GTCTC 2 cut(s) 385, 458
BstMBI GATC 2 cut(s) 42, 135
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 200, 209
BstNI CCWGG 2 cut(s) 146, 475
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 144, 473
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 2 cut(s) 164, 394
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 143, 228
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 142, 477
CseI GACGC 1 cut(s) 62
CviAII CATG 2 cut(s) 15, 340
CviJI RGCY 9 cut(s) 73, 95, 117, 143, 212, 224, 228, 454, 498
CviKI_1 RGCY 9 cut(s) 73, 95, 117, 143, 212, 224, 228, 454, 498
DpnI GATC 2 cut(s) 44, 137
DpnII GATC 2 cut(s) 42, 135
Eco31I GGTCTC 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 204, 461
EcoRII CCWGG 2 cut(s) 144, 473
FaeI CATG 2 cut(s) 18, 343
FaiI YATR 8 cut(s) 16, 77, 188, 341, 374, 438, 446, 488
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 14, 339
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 3 cut(s) 221, 365, 499
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 143, 228
HapII CCGG 2 cut(s) 225, 387
HgaI GACGC 1 cut(s) 62
Hin1II CATG 2 cut(s) 18, 343
HpaII CCGG 2 cut(s) 225, 387
HphI GGTGA 2 cut(s) 80, 81
Hpy166II GTNNAC 2 cut(s) 217, 392
Hpy188I TCNGA 2 cut(s) 286, 324
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 217, 392
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 172, 266
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 22, 180, 392, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 209
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 2 cut(s) 18, 343
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 42, 135
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 25
MaeI CTAG 3 cut(s) 221, 365, 499
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 3 cut(s) 236, 260, 313
MalI GATC 2 cut(s) 44, 137
MboI GATC 2 cut(s) 42, 135
MboII GAAGA 1 cut(s) 380
MfeI CAATTG 1 cut(s) 422
MhlI GDGCHC 2 cut(s) 164, 394
MluCI AATT 3 cut(s) 10, 292, 422
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 4 cut(s) 49, 107, 311, 330
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 1 cut(s) 6
MspI CCGG 2 cut(s) 225, 387
MspR9I CCNGG 2 cut(s) 146, 475
MunI CAATTG 1 cut(s) 422
MvaI CCWGG 2 cut(s) 146, 475
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 200, 209
NaeI GCCGGC 1 cut(s) 226
NdeII GATC 2 cut(s) 42, 135
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 2 cut(s) 18, 343
NlaIV GGNNCC 2 cut(s) 161, 479
NmuCI GTSAC 2 cut(s) 236, 260
NspI RCATGY 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 204
PciI ACATGT 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 202
PmaCI CACGTG 1 cut(s) 278
PmlI CACGTG 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 278
PscI ACATGT 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 144, 473
PspCI CACGTG 1 cut(s) 278
PspGI CCWGG 2 cut(s) 144, 473
PspN4I GGNNCC 2 cut(s) 161, 479
PspPI GGNCC 2 cut(s) 142, 477
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 42, 135
Sau96I GGNCC 2 cut(s) 142, 477
ScrFI CCNGG 2 cut(s) 146, 475
SduI GDGCHC 2 cut(s) 164, 394
SetI ASST 9 cut(s) 150, 222, 280, 303, 313, 322, 456, 487, 500
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 477
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 3 cut(s) 10, 292, 422
SspMI CTAG 3 cut(s) 221, 365, 499
StyD4I CCNGG 2 cut(s) 144, 473
TaaI ACNGT 2 cut(s) 172, 266
TaiI ACGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 41, 205
TaqII GACCGA 1 cut(s) 242
TasI AATT 3 cut(s) 10, 292, 422
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 236, 260
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 2 cut(s) 236, 260
TspRI CASTG 1 cut(s) 187
VneI GTGCAC 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 477
XceI RCATGY 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 3 cut(s) 221, 365, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.