RLG00000001642

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019043
Physical Location & Seq
Forward (+)
18662500 .. 18663050
551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001642

Sequence Viewer

Length: 471 bp
ATGCTCGATCCTATTGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACCAGACAATAGTGAAATACAAAGAGGTCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTTTCCTGCGGTGACAAATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCTAACTGGTCGCCGTGATAGTAGGACTTCACGTGCTTCTGATGTCAATTTCAACCTCCCTACACCTGTAACGCCTCTGAAAGACATTACAGACATGTTTGGCAGGAGAAATTTCACACTAAAAGATATGGTTGTCTCGTCCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAATTGAAGACAGACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

157

Amino Acids

16.97

Weight (kDa)

4.88

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 6 - 141 3e-41 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 2, 25
AcsI RAATTY 1 cut(s) 343
AcvI CACGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 462, 463
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 2 cut(s) 286, 415
AjnI CCWGG 2 cut(s) 132, 461
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 2 cut(s) 373, 446
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 2 cut(s) 2, 25
Ama87I CYCGRG 2 cut(s) 192, 449
AoxI GGCC 3 cut(s) 129, 214, 465
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 130, 465
AsuHPI GGTGA 3 cut(s) 68, 69, 182
AvaI CYCGRG 2 cut(s) 192, 449
BaeGI GKGCMC 2 cut(s) 152, 382
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 58
BceAI ACGGC 2 cut(s) 185, 231
BciT130I CCWGG 2 cut(s) 134, 463
BcoDI GTCTC 2 cut(s) 373, 446
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 189
BlpI GCTNAGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 134, 463
BmeT110I CYCGRG 2 cut(s) 192, 449
BmgT120I GGNCC 2 cut(s) 130, 465
BmrFI CCNGG 2 cut(s) 134, 463
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 132, 461, 462
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 463
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 2 cut(s) 134, 463
BseDI CCNNGG 3 cut(s) 132, 461, 462
BseLI CCNNNNNNNGG 2 cut(s) 462, 463
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 244
BseSI GKGCMC 2 cut(s) 152, 382
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 3 cut(s) 131, 216, 467
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 192, 449
BsiSI CCGG 2 cut(s) 213, 375
BslI CCNNNNNNNGG 2 cut(s) 462, 463
BsmAI GTCTC 2 cut(s) 373, 446
BsnI GGCC 3 cut(s) 131, 216, 467
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 2 cut(s) 192, 449
Bsp1286I GDGCHC 2 cut(s) 152, 382
Bsp143I GATC 3 cut(s) 7, 30, 123
Bsp1720I GCTNAGC 1 cut(s) 443
BspACI CCGC 1 cut(s) 168
BspANI GGCC 3 cut(s) 131, 216, 467
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 1 cut(s) 44
BspPI GGATC 2 cut(s) 2, 25
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 132, 461, 462
BssMI GATC 3 cut(s) 7, 30, 123
Bst2UI CCWGG 2 cut(s) 134, 463
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 443
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 3 cut(s) 10, 33, 126
BstMAI GTCTC 2 cut(s) 373, 446
BstMBI GATC 3 cut(s) 7, 30, 123
BstMWI GCNNNNNNNGC 2 cut(s) 188, 197
BstNI CCWGG 2 cut(s) 134, 463
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 132, 461
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 152, 382
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 422
BsuRI GGCC 3 cut(s) 131, 216, 467
Cac8I GCNNGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 130, 465
CseI GACGC 1 cut(s) 50
CviAII CATG 1 cut(s) 328
CviJI RGCY 8 cut(s) 61, 131, 200, 212, 216, 442, 447, 467
CviKI_1 RGCY 8 cut(s) 61, 131, 200, 212, 216, 442, 447, 467
DdeI CTNAG 1 cut(s) 443
DpnI GATC 3 cut(s) 9, 32, 125
DpnII GATC 3 cut(s) 7, 30, 123
Eco31I GGTCTC 1 cut(s) 446
Eco72I CACGTG 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 192, 449
EcoRII CCWGG 2 cut(s) 132, 461
FaeI CATG 1 cut(s) 331
FaiI YATR 5 cut(s) 65, 329, 362, 426, 434
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 3 cut(s) 131, 216, 467
HapII CCGG 2 cut(s) 213, 375
HgaI GACGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 331
HpaII CCGG 2 cut(s) 213, 375
HphI GGTGA 3 cut(s) 68, 69, 182
Hpy166II GTNNAC 2 cut(s) 205, 380
Hpy188I TCNGA 2 cut(s) 274, 312
Hpy188III TCNNGA 2 cut(s) 107, 194
Hpy8I GTNNAC 2 cut(s) 205, 380
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 380, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 197
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 331
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 7, 30, 123
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 3 cut(s) 170, 224, 301
MalI GATC 3 cut(s) 9, 32, 125
MboI GATC 3 cut(s) 7, 30, 123
MboII GAAGA 1 cut(s) 427
MfeI CAATTG 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 152, 382
MluCI AATT 4 cut(s) 176, 280, 343, 410
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 4 cut(s) 37, 95, 299, 318
MroNI GCCGGC 1 cut(s) 212
MspI CCGG 2 cut(s) 213, 375
MspR9I CCNGG 2 cut(s) 134, 463
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 2 cut(s) 134, 463
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 188, 197
NaeI GCCGGC 1 cut(s) 214
NdeII GATC 3 cut(s) 7, 30, 123
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 170, 224
NspI RCATGY 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 192
PasI CCCWGGG 1 cut(s) 462
PciI ACATGT 1 cut(s) 327
PdiI GCCGGC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 190
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 266
PscI ACATGT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 132, 461
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 2 cut(s) 132, 461
PspPI GGNCC 2 cut(s) 130, 465
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 3 cut(s) 7, 30, 123
Sau96I GGNCC 2 cut(s) 130, 465
ScrFI CCNGG 2 cut(s) 134, 463
SduI GDGCHC 2 cut(s) 152, 382
SetI ASST 7 cut(s) 106, 138, 210, 268, 291, 301, 444
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 4 cut(s) 176, 280, 343, 410
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 132, 461
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 6, 29, 193
TasI AATT 4 cut(s) 176, 280, 343, 410
TseFI GTSAC 2 cut(s) 170, 224
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 2 cut(s) 170, 224
VneI GTGCAC 1 cut(s) 378
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.