Rmu_sc0001772.1_g000028

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001772.1
OG0019043
Physical Location & Seq
Forward (+)
114062 .. 115007
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001772.1_g000028.1.cds

Sequence Viewer

Length: 633 bp
atgggtggtcgtcgatctaattgtcacaactatcctcaccttcagcttgttcacaatcatcatccttccctccgaggccaagggaacagcttacatgttgggttttacgcttcgagttgccccaaggttgaggacattgttgccgaggttgtggcccgtggttgtgatgcctcgatcctgttggacgcgacaccatctggtgagcctatagagaaaacatcaccagccaatagtgaaacacaaagaggctttgatgttattgatgagatcaaggcccaggtagagcaggggtgcccccaaactgtttcctgcactgacatattagcatttgctgctcgagaagccgtttacctagccggcctaccccgtcacaatgtcccaatcggtcgccgtgacagtaggacttcacgtgcttctgatgtcaatttcaacctccctacacctgtaacacctctgaaagacattacagacatgtttggcaggagaaatcccacactagaagatatggttgtctcgtccggtgcacactccattggcgaagcacaatgcacccaattgaacacagactatacaaatatagcaaagctcaaccccgagacccttccctggacccaacctatgctgatgagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

210

Amino Acids

22.88

Weight (kDa)

5.87

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019043)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227481 RchiOBHm_Chr7g0227501
rosa_laevigata RLG00000001642
rosa_multiflora Rmu_co8327697.1_g000001 Rmu_co8376935.1_g000001 Rmu_sc0001772.1_g000028
rosa_samantha Rh7CG413600 Rh7CG413700 Rh7DG390600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AccII CGCG 1 cut(s) 188
AclWI GGATC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 26
AcvI CACGTG 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 606
AflIII ACRYGT 2 cut(s) 94, 471
AgsI TTSAA 2 cut(s) 430, 559
AjnI CCWGG 2 cut(s) 276, 605
AluBI AGCT 4 cut(s) 46, 90, 586, 630
AluI AGCT 4 cut(s) 46, 90, 586, 630
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 2 cut(s) 517, 590
Alw44I GTGCAC 1 cut(s) 522
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 2 cut(s) 336, 593
AoxI GGCC 4 cut(s) 76, 153, 273, 358
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 332
AspS9I GGNCC 3 cut(s) 154, 274, 609
AsuHPI GGTGA 3 cut(s) 29, 212, 213
AvaI CYCGRG 2 cut(s) 336, 593
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 2 cut(s) 296, 526
BanI GGYRCC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 329, 375
BciT130I CCWGG 2 cut(s) 278, 607
BcoDI GTCTC 2 cut(s) 517, 590
BfaI CTAG 3 cut(s) 353, 497, 631
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 278, 607
Bme18I GGWCC 1 cut(s) 609
BmeT110I CYCGRG 2 cut(s) 336, 593
BmgT120I GGNCC 3 cut(s) 154, 274, 609
BmiI GGNNCC 2 cut(s) 293, 611
BmrFI CCNGG 2 cut(s) 278, 607
BmsI GCATC 1 cut(s) 157
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 7 cut(s) 73, 79, 123, 144, 157, 276, 605
BsaWI WCCGGW 1 cut(s) 518
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 1 cut(s) 356
BseBI CCWGG 2 cut(s) 278, 607
BseDI CCNNGG 7 cut(s) 73, 79, 123, 144, 157, 276, 605
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 606
BseSI GKGCMC 2 cut(s) 296, 526
BseXI GCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 4 cut(s) 78, 155, 275, 360
BshNI GGYRCC 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 526
BsiHKCI CYCGRG 2 cut(s) 336, 593
BsiSI CCGG 2 cut(s) 357, 519
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 2 cut(s) 517, 590
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 4 cut(s) 78, 155, 275, 360
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 2 cut(s) 336, 593
Bsp1286I GDGCHC 2 cut(s) 296, 526
Bsp143I GATC 3 cut(s) 14, 174, 267
BspANI GGCC 4 cut(s) 78, 155, 275, 360
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 293, 611
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 7 cut(s) 73, 79, 123, 144, 157, 276, 605
BssMI GATC 3 cut(s) 14, 174, 267
BssT1I CCWWGG 2 cut(s) 79, 123
Bst2UI CCWGG 2 cut(s) 278, 607
Bst4CI ACNGT 2 cut(s) 304, 398
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 3 cut(s) 17, 177, 270
BstMAI GTCTC 2 cut(s) 517, 590
BstMBI GATC 3 cut(s) 14, 174, 267
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 2 cut(s) 332, 341
BstNI CCWGG 2 cut(s) 278, 607
BstNSI RCATGY 2 cut(s) 98, 475
BstSCI CCNGG 2 cut(s) 276, 605
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 2 cut(s) 296, 526
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 319
BsuRI GGCC 4 cut(s) 78, 155, 275, 360
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 154, 274, 609
CseI GACGC 1 cut(s) 194
CviAII CATG 2 cut(s) 95, 472
DpnI GATC 3 cut(s) 16, 176, 269
DpnII GATC 3 cut(s) 14, 174, 267
Eco130I CCWWGG 2 cut(s) 79, 123
Eco31I GGTCTC 1 cut(s) 590
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 26
Eco72I CACGTG 1 cut(s) 410
Eco88I CYCGRG 2 cut(s) 336, 593
EcoRII CCWGG 2 cut(s) 276, 605
EcoT14I CCWWGG 2 cut(s) 79, 123
ErhI CCWWGG 2 cut(s) 79, 123
FaeI CATG 2 cut(s) 98, 475
FaiI YATR 8 cut(s) 96, 209, 320, 473, 506, 570, 578, 620
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 94, 471
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 3 cut(s) 353, 497, 631
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 4 cut(s) 78, 155, 275, 360
HapII CCGG 2 cut(s) 357, 519
HgaI GACGC 1 cut(s) 194
Hin1II CATG 2 cut(s) 98, 475
HpaII CCGG 2 cut(s) 357, 519
HphI GGTGA 3 cut(s) 29, 212, 213
Hpy166II GTNNAC 3 cut(s) 52, 349, 524
Hpy188I TCNGA 3 cut(s) 74, 418, 456
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 3 cut(s) 52, 349, 524
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 50, 75, 611
HpyCH4III ACNGT 2 cut(s) 304, 398
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 312, 524, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 341
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 2 cut(s) 98, 475
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 14, 174, 267
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 157
MaeI CTAG 3 cut(s) 353, 497, 631
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 4 cut(s) 23, 368, 392, 445
MalI GATC 3 cut(s) 16, 176, 269
MboI GATC 3 cut(s) 14, 174, 267
MboII GAAGA 1 cut(s) 512
MfeI CAATTG 1 cut(s) 554
MhlI GDGCHC 2 cut(s) 296, 526
MluCI AATT 3 cut(s) 19, 424, 554
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 9 cut(s) 45, 68, 80, 124, 139, 181, 239, 443, 462
MroNI GCCGGC 1 cut(s) 356
MspI CCGG 2 cut(s) 357, 519
MspR9I CCNGG 2 cut(s) 278, 607
MunI CAATTG 1 cut(s) 554
MvaI CCWGG 2 cut(s) 278, 607
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 332, 341
NaeI GCCGGC 1 cut(s) 358
NdeII GATC 3 cut(s) 14, 174, 267
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 98, 475
NlaIV GGNNCC 2 cut(s) 293, 611
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 3 cut(s) 23, 368, 392
NspI RCATGY 2 cut(s) 98, 475
PaeR7I CTCGAG 1 cut(s) 336
PciI ACATGT 2 cut(s) 94, 471
PdiI GCCGGC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 334
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 410
PscI ACATGT 2 cut(s) 94, 471
Psp6I CCWGG 2 cut(s) 276, 605
PspCI CACGTG 1 cut(s) 410
PspGI CCWGG 2 cut(s) 276, 605
PspN4I GGNNCC 2 cut(s) 293, 611
PspPI GGNCC 3 cut(s) 154, 274, 609
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 3 cut(s) 14, 174, 267
Sau96I GGNCC 3 cut(s) 154, 274, 609
ScrFI CCNGG 2 cut(s) 278, 607
SduI GDGCHC 2 cut(s) 296, 526
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 609
SlaI CTCGAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 3 cut(s) 19, 424, 554
SspMI CTAG 3 cut(s) 353, 497, 631
StyD4I CCNGG 2 cut(s) 276, 605
StyI CCWWGG 2 cut(s) 79, 123
TaaI ACNGT 2 cut(s) 304, 398
TaiI ACGT 1 cut(s) 412
TaqI TCGA 4 cut(s) 13, 113, 173, 337
TaqII GACCGA 1 cut(s) 374
TasI AATT 3 cut(s) 19, 424, 554
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 3 cut(s) 23, 368, 392
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 3 cut(s) 23, 368, 392
TspRI CASTG 1 cut(s) 319
VneI GTGCAC 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 609
XceI RCATGY 2 cut(s) 98, 475
XhoI CTCGAG 1 cut(s) 336
XspI CTAG 3 cut(s) 353, 497, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.