RchiOBHm_Chr7g0238041

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015640
Physical Location & Seq
Reverse (-)
63379357 .. 63381058
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGGACCGGAAGATCAACCTCATCGACATTCTCAAAGACAAGGCCTCCATTCTCCGCGCCACCCTCTCCATCAATCGCCACGTGTCGTCCATCCACGTCGCCATCCTCCGCGCCACCTCGCACGACCCGTCGTCGCCGCCGTCCGAGGAAAGAATCGCCGACATCCTCGACCTGGGCCGGTCGTCGCGTCTCGCTGCGTGCACCTGCATTGACATCCTCATGGACCGCCTGCACGTCACCCAGAACGCGTTCGTCGCGCTGAAATGCCTCTACACCGTACATAACATAGTATCCAGAGGTTCGTTCATTTTCAGAGATCAGATTTCTTACCACCCGAGTTTCGGAGGGCGTAACTTCCTCAACATGACCATGTTCAGCGACCAATCGGATTTGGATACGTGGGAGTTTTCGTTATGGGTGAGGTGGTACGCCGCCGTGGTGGAACAGAATCTGATGGTGGCGAGGGCAATCGGTTACTATCTCAACTCAGAAAACATGAAAGCAGAAAATCATAATAAGGTTGTGGTGGCTCTGTTGAATTCTGATTTGGTGGCCGATATCGAAGTGCTAGTGGGATTCGTGGCCAGGATTAGCGACGCGCCGGAGTCATTGAGCCTGCAGCGGAACGATTTGGTCTACGAGATCGTCAAGGCGGCGAGTGAGGACTACAGGGCGGTGCAGCGCGAAATTTCGGTTCGGGTTAAAGAAGTCGAGGACAGAGTGGAGAGGCTGAGTCTGTCCGAGTTGACTCGGGTGGTGGAGGCGCTGAGGAGGCTGGAGGATTGTAAGGAGAGGCTGGTGTTGCTGTTCGTGAACCGGAAAAGGAACGACGGGCTGTGGGAGTCGGTGAGGAAAACGAGGGCGGAGCTGGCGGAGACGAAGGCGCAGAGAGAGGAGAGGAGGCTGGTGGTGGTGAGGACGGTTAGTAGGAACAGAGGGAGGGACGAGTTGGGCGAGTCGACTCAGTGCTGGAACCCGTTTCTTGAACCAGGGCAGTTGCTTCTGTTACCATCTGGTGGTGGAGGAGGAGGGTGGCTGGGGATGGGGCCCAGTCCGATAGCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

355

Amino Acids

40.16

Weight (kDa)

7.06

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 31 - 213 4.1e-12 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015640)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g36220
malus_domestica MD08G1190800.v1.1 MD15G1378100.v1.1
prunus_persica Prupe.1G524700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0238041
rosa_laevigata RLG00000000945
rosa_multiflora Rmu_co8251785.1_g000001 Rmu_sc0002586.1_g000013 Rmu_sc0021174.1_g000001
rosa_roxburghii Rroxscaffold_3G00223430
rosa_rugosa Rorug07G0310200
rosa_samantha Rh7AG465400 Rh7BG436200 Rh7CG483600 Rh7DG452100
rosa_wichuraiana Rw7G038550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccI GTMKAC 2 cut(s) 636, 959
AccII CGCG 7 cut(s) 57, 111, 187, 248, 257, 599, 684
AcoI YGGCCR 2 cut(s) 552, 582
AcsI RAATTY 2 cut(s) 538, 687
AcvI CACGTG 1 cut(s) 82
AfaI GTAC 2 cut(s) 279, 428
AfiI CCNNNNNNNGG 3 cut(s) 172, 341, 1016
AflIII ACRYGT 2 cut(s) 81, 246
AgsI TTSAA 2 cut(s) 538, 986
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 2 cut(s) 97, 235
AjnI CCWGG 3 cut(s) 171, 584, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 1 cut(s) 868
AluI AGCT 1 cut(s) 868
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 194, 869
Alw44I GTGCAC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 451
Ama87I CYCGRG 2 cut(s) 334, 750
AoxI GGCC 5 cut(s) 42, 175, 552, 582, 1046
ApaI GGGCCC 1 cut(s) 1050
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 194, 619, 679
ApoI RAATTY 2 cut(s) 538, 687
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 7 cut(s) 59, 113, 259, 601, 684, 766, 886
AspS9I GGNCC 5 cut(s) 4, 175, 223, 1046, 1047
AsuHPI GGTGA 4 cut(s) 229, 430, 859, 925
AvaI CYCGRG 2 cut(s) 334, 750
AvaII GGWCC 2 cut(s) 4, 223
BaeGI GKGCMC 2 cut(s) 203, 1050
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 1 cut(s) 1050
BbrPI CACGTG 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 767
BbvI GCAGC 3 cut(s) 181, 631, 691
BccI CCATC 6 cut(s) 77, 98, 110, 448, 1018, 1036
BceAI ACGGC 3 cut(s) 124, 419, 1046
BciT130I CCWGG 3 cut(s) 173, 586, 990
BciVI GTATCC 2 cut(s) 301, 388
BcoDI GTCTC 2 cut(s) 194, 869
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 2 cut(s) 617, 667
BfoI RGCGCY 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 2 cut(s) 301, 388
BisI GCNGC 6 cut(s) 137, 195, 432, 620, 654, 680
BlsI GCNGC 6 cut(s) 138, 196, 433, 621, 655, 681
Bme1390I CCNGG 3 cut(s) 173, 586, 990
Bme18I GGWCC 2 cut(s) 4, 223
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 2 cut(s) 334, 750
BmgBI CACGTC 2 cut(s) 97, 235
BmgT120I GGNCC 5 cut(s) 4, 175, 223, 1046, 1047
BmiI GGNNCC 3 cut(s) 974, 1047, 1048
BmrFI CCNGG 3 cut(s) 173, 586, 990
BmrI ACTGGG 1 cut(s) 1044
BmuI ACTGGG 1 cut(s) 1044
BpmI CTGGAG 1 cut(s) 797
Bpu10I CCTNAGC 1 cut(s) 767
BsaAI YACGTR 2 cut(s) 82, 399
BsaJI CCNNGG 4 cut(s) 144, 172, 435, 989
BsaWI WCCGGW 2 cut(s) 6, 816
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 395, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 341, 1016
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 1050
BseBI CCWGG 3 cut(s) 173, 586, 990
BseDI CCNNGG 4 cut(s) 144, 172, 435, 989
BseGI GGATG 5 cut(s) 90, 102, 162, 213, 1047
BseLI CCNNNNNNNGG 3 cut(s) 172, 341, 1016
BseMII CTCAG 4 cut(s) 501, 722, 758, 977
BseNI ACTGG 1 cut(s) 1050
BseRI GAGGAG 5 cut(s) 784, 908, 913, 1038, 1041
BseSI GKGCMC 2 cut(s) 203, 1050
BseXI GCAGC 3 cut(s) 181, 631, 691
BseYI CCCAGC 1 cut(s) 1036
BsgI GTGCAG 2 cut(s) 215, 698
Bsh1236I CGCG 7 cut(s) 57, 111, 187, 248, 257, 599, 684
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 44, 177, 554, 584, 1048
BsiEI CGRYCG 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 334, 750
BsiSI CCGG 4 cut(s) 7, 178, 602, 817
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 3 cut(s) 172, 341, 1016
BsmAI GTCTC 2 cut(s) 194, 869
BsmBI CGTCTC 2 cut(s) 194, 869
BsmFI GGGAC 1 cut(s) 956
BsnI GGCC 5 cut(s) 44, 177, 554, 584, 1048
BsoBI CYCGRG 2 cut(s) 334, 750
Bsp120I GGGCCC 1 cut(s) 1046
Bsp1286I GDGCHC 2 cut(s) 203, 1050
Bsp143I GATC 3 cut(s) 12, 316, 642
BspANI GGCC 5 cut(s) 44, 177, 554, 584, 1048
BspCNI CTCAG 4 cut(s) 500, 723, 759, 976
BspFNI CGCG 7 cut(s) 57, 111, 187, 248, 257, 599, 684
BspLI GGNNCC 3 cut(s) 974, 1047, 1048
BspMAI CTGCAG 1 cut(s) 621
BspMI ACCTGC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 1 cut(s) 1050
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 4 cut(s) 144, 172, 435, 989
BssMI GATC 3 cut(s) 12, 316, 642
Bst2UI CCWGG 3 cut(s) 173, 586, 990
Bst4CI ACNGT 2 cut(s) 277, 922
BstBAI YACGTR 2 cut(s) 82, 399
BstC8I GCNNGC 4 cut(s) 199, 230, 617, 870
BstDEI CTNAG 4 cut(s) 487, 731, 767, 963
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 5 cut(s) 90, 102, 162, 213, 1047
BstFNI CGCG 7 cut(s) 57, 111, 187, 248, 257, 599, 684
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 7 cut(s) 59, 113, 259, 601, 684, 766, 886
BstKTI GATC 3 cut(s) 15, 319, 645
BstMAI GTCTC 2 cut(s) 194, 869
BstMBI GATC 3 cut(s) 12, 316, 642
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 254, 772, 802, 869
BstNI CCWGG 3 cut(s) 173, 586, 990
BstSCI CCNGG 3 cut(s) 171, 584, 988
BstSFI CTRYAG 2 cut(s) 617, 667
BstSLI GKGCMC 2 cut(s) 203, 1050
BstUI CGCG 7 cut(s) 57, 111, 187, 248, 257, 599, 684
BstV1I GCAGC 3 cut(s) 181, 631, 691
BsuI GTATCC 2 cut(s) 301, 388
BsuRI GGCC 5 cut(s) 44, 177, 554, 584, 1048
BtgI CCRYGG 1 cut(s) 435
BtrI CACGTC 2 cut(s) 97, 235
BtsCI GGATG 5 cut(s) 90, 102, 162, 213, 1047
BtsIMutI CAGTG 1 cut(s) 971
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 4 cut(s) 199, 230, 617, 870
CaiI CAGNNNCTG 1 cut(s) 451
CfoI GCGC 7 cut(s) 59, 113, 259, 601, 684, 766, 886
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 5 cut(s) 4, 175, 223, 1046, 1047
CseI GACGC 2 cut(s) 176, 605
Csp6I GTAC 2 cut(s) 278, 427
CviAII CATG 4 cut(s) 220, 364, 370, 496
CviQI GTAC 2 cut(s) 278, 427
DdeI CTNAG 4 cut(s) 487, 731, 767, 963
DpnI GATC 3 cut(s) 14, 318, 644
DpnII GATC 3 cut(s) 12, 316, 642
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 2 cut(s) 552, 582
Eam1105I GACNNNNNGTC 1 cut(s) 130
EciI GGCGGA 2 cut(s) 878, 887
Eco147I AGGCCT 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 1050
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 4, 223
Eco72I CACGTG 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 334, 750
EcoO109I RGGNCCY 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 3 cut(s) 171, 584, 988
EcoRV GATATC 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 1050
Esp3I CGTCTC 2 cut(s) 194, 869
FaeI CATG 4 cut(s) 223, 367, 373, 499
FaiI YATR 8 cut(s) 221, 282, 287, 365, 371, 415, 497, 513
FaqI GGGAC 1 cut(s) 956
FatI CATG 4 cut(s) 219, 363, 369, 495
FblI GTMKAC 2 cut(s) 636, 959
Fnu4HI GCNGC 6 cut(s) 137, 195, 432, 620, 654, 680
FokI GGATG 5 cut(s) 77, 89, 149, 200, 1054
FriOI GRGCYC 1 cut(s) 1050
Fsp4HI GCNGC 6 cut(s) 137, 195, 432, 620, 654, 680
FspBI CTAG 1 cut(s) 569
GlaI GCGC 7 cut(s) 58, 112, 258, 600, 683, 765, 885
GluI GCNGC 6 cut(s) 137, 195, 432, 620, 654, 680
GsaI CCCAGC 1 cut(s) 1040
GsuI CTGGAG 1 cut(s) 797
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 5 cut(s) 44, 177, 554, 584, 1048
HapII CCGG 4 cut(s) 7, 178, 602, 817
HgaI GACGC 2 cut(s) 176, 605
HhaI GCGC 7 cut(s) 59, 113, 259, 601, 684, 766, 886
Hin1II CATG 4 cut(s) 223, 367, 373, 499
Hin6I GCGC 7 cut(s) 57, 111, 257, 599, 682, 764, 884
HinP1I GCGC 7 cut(s) 57, 111, 257, 599, 682, 764, 884
HincII GTYRAC 2 cut(s) 747, 960
HindII GTYRAC 2 cut(s) 747, 960
HinfI GANTC 9 cut(s) 153, 448, 576, 605, 733, 748, 842, 956, 961
HpaII CCGG 4 cut(s) 7, 178, 602, 817
HphI GGTGA 4 cut(s) 229, 430, 859, 925
Hpy166II GTNNAC 5 cut(s) 201, 637, 747, 814, 960
Hpy188III TCNNGA 3 cut(s) 294, 811, 983
Hpy8I GTNNAC 5 cut(s) 201, 637, 747, 814, 960
Hpy99I CGWCG 7 cut(s) 101, 133, 136, 187, 257, 599, 833
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 2 cut(s) 277, 922
HpyCH4IV ACGT 4 cut(s) 81, 96, 234, 398
HpyCH4V TGCA 5 cut(s) 201, 207, 232, 619, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 772, 802, 869
HpyF3I CTNAG 4 cut(s) 487, 731, 767, 963
HpySE526I ACGT 4 cut(s) 81, 96, 234, 398
Hsp92II CATG 4 cut(s) 223, 367, 373, 499
HspAI GCGC 7 cut(s) 57, 111, 257, 599, 682, 764, 884
Kzo9I GATC 3 cut(s) 12, 316, 642
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 3 cut(s) 181, 631, 691
MaeI CTAG 1 cut(s) 569
MaeII ACGT 4 cut(s) 81, 96, 234, 398
MaeIII GTNAC 4 cut(s) 235, 350, 473, 1005
MalI GATC 3 cut(s) 14, 318, 644
MboI GATC 3 cut(s) 12, 316, 642
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 203, 1050
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 2 cut(s) 538, 687
MluI ACGCGT 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 6 cut(s) 614, 742, 742, 851, 955, 965
Mox20I TGGCCA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 584
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 2 cut(s) 218, 368
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 4 cut(s) 7, 178, 602, 817
MspR9I CCNGG 3 cut(s) 173, 586, 990
MvaI CCWGG 3 cut(s) 173, 586, 990
MvnI CGCG 7 cut(s) 57, 111, 187, 248, 257, 599, 684
MwoI GCNNNNNNNGC 4 cut(s) 254, 772, 802, 869
NdeII GATC 3 cut(s) 12, 316, 642
NlaIII CATG 4 cut(s) 223, 367, 373, 499
NlaIV GGNNCC 3 cut(s) 974, 1047, 1048
NmuCI GTSAC 1 cut(s) 235
PaqCI CACCTGC 1 cut(s) 212
PceI AGGCCT 1 cut(s) 44
PcsI WCGNNNNNNNCGW 3 cut(s) 125, 137, 951
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 3 cut(s) 153, 448, 576
PflMI CCANNNNNTGG 1 cut(s) 1016
PkrI GCNGC 6 cut(s) 138, 196, 433, 621, 655, 681
PleI GAGTC 6 cut(s) 613, 741, 742, 850, 955, 964
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
PpsI GAGTC 6 cut(s) 613, 741, 742, 850, 955, 964
Ppu21I YACGTR 2 cut(s) 82, 399
Psp6I CCWGG 3 cut(s) 171, 584, 988
PspCI CACGTG 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 1036
PspGI CCWGG 3 cut(s) 171, 584, 988
PspN4I GGNNCC 3 cut(s) 974, 1047, 1048
PspOMI GGGCCC 1 cut(s) 1046
PspPI GGNCC 5 cut(s) 4, 175, 223, 1046, 1047
PstI CTGCAG 1 cut(s) 621
PstNI CAGNNNCTG 1 cut(s) 451
RsaI GTAC 2 cut(s) 279, 428
RsaNI GTAC 2 cut(s) 278, 427
RseI CAYNNNNRTG 2 cut(s) 218, 368
SalI GTCGAC 1 cut(s) 958
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 6 cut(s) 137, 195, 432, 620, 654, 680
Sau3AI GATC 3 cut(s) 12, 316, 642
Sau96I GGNCC 5 cut(s) 4, 175, 223, 1046, 1047
SchI GAGTC 6 cut(s) 614, 742, 742, 851, 955, 965
ScrFI CCNGG 3 cut(s) 173, 586, 990
SduI GDGCHC 2 cut(s) 203, 1050
SfcI CTRYAG 2 cut(s) 617, 667
SinI GGWCC 2 cut(s) 4, 223
SmiMI CAYNNNNRTG 2 cut(s) 218, 368
Sse9I AATT 2 cut(s) 538, 687
SseBI AGGCCT 1 cut(s) 44
SspMI CTAG 1 cut(s) 569
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 171, 584, 988
TaaI ACNGT 2 cut(s) 277, 922
TaiI ACGT 4 cut(s) 84, 99, 237, 401
TaqI TCGA 5 cut(s) 24, 168, 561, 711, 959
TasI AATT 2 cut(s) 538, 687
TauI GCSGC 3 cut(s) 139, 434, 656
TfiI GAWTC 3 cut(s) 153, 448, 576
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 971
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 3 cut(s) 194, 619, 679
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 295, 512
TspRI CASTG 1 cut(s) 971
Van91I CCANNNNNTGG 1 cut(s) 1016
VneI GTGCAC 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 4, 223
XapI RAATTY 2 cut(s) 538, 687
XmiI GTMKAC 2 cut(s) 636, 959
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.