RchiOBHm_Chr6g0251131

Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014109
Physical Location & Seq
Forward (+)
6460773 .. 6463020
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGATTTCAAGCAAGAAGAGATTAAGTCTGTAACTATGGACCCTACAACTAAGGGGATCAAGGATTCATCTGTTAAGATGAAGGTGTTGTTCTTTGCCAGGGCTCGGGACCTCACTGGCCTCACTGAGATGCCATTGGACGTATCATCTGGTAGTACAGCCAATGATTGTTTAAATAAGCTCATTTCCATTTTTCCAAGCTTGGAAGAGATCCGTGGGTGCATGGTGCTTGCTCTTAATGAAGAGTACACAACTGAGTCGGCACTTGTTAAAGACAAAGATGAGTTGGCCATTATACCTCCAATCAGTGGGGGCTAA

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

4.67

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiS PF02597 29 - 105 6.9e-14 ThiS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10100 AT4G10100 AT4G10100
fragaria_vesca FvH4_2g00750
malus_domestica MD05G1003200.v1.1 MD10G1004200.v1.1
prunus_persica Prupe.8G006600_v2.0.a1
pyrus_communis pycom05g00290
rosa_chinensis RchiOBHm_Chr6g0251131
rosa_laevigata RLG00000015481
rosa_roxburghii Rroxscaffold_7G00217010
rosa_rugosa Rorug05G0500600
rosa_samantha Rh6AG009500 Rh6BG002400 Rh6CG006300 Rh6DG006600
rosa_wichuraiana Rw6G000950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 308
AclWI GGATC 2 cut(s) 65, 205
AcoI YGGCCR 1 cut(s) 288
AfaI GTAC 2 cut(s) 157, 248
AfiI CCNNNNNNNGG 2 cut(s) 105, 308
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 2 cut(s) 181, 201
AluI AGCT 2 cut(s) 181, 201
AlwI GGATC 2 cut(s) 65, 205
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 2 cut(s) 118, 288
AspS9I GGNCC 2 cut(s) 40, 109
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 2 cut(s) 40, 109
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 2 cut(s) 40, 109
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 40, 109
BmiI GGNNCC 2 cut(s) 42, 110
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 99, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 308
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 99, 214
BseLI CCNNNNNNNGG 2 cut(s) 105, 308
BseMII CTCAG 2 cut(s) 117, 246
BseNI ACTGG 1 cut(s) 121
BshFI GGCC 2 cut(s) 120, 290
BsiHKCI CYCGRG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 105, 308
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 120, 290
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 57, 210
BspANI GGCC 2 cut(s) 120, 290
BspCNI CTCAG 2 cut(s) 118, 247
BspLI GGNNCC 2 cut(s) 42, 110
BspPI GGATC 2 cut(s) 65, 205
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 99, 214
BssMI GATC 2 cut(s) 57, 210
Bst2UI CCWGG 1 cut(s) 100
Bst6I CTCTTC 3 cut(s) 12, 201, 237
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 51, 126, 255
BstDSI CCRYGG 1 cut(s) 214
BstKTI GATC 2 cut(s) 60, 213
BstMBI GATC 2 cut(s) 57, 210
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 2 cut(s) 120, 290
BtgI CCRYGG 1 cut(s) 214
BtsIMutI CAGTG 3 cut(s) 114, 123, 313
Cac8I GCNNGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 40, 109
Csp6I GTAC 2 cut(s) 156, 247
CviAII CATG 1 cut(s) 223
CviJI RGCY 7 cut(s) 104, 120, 161, 181, 201, 290, 315
CviKI_1 RGCY 7 cut(s) 104, 120, 161, 181, 201, 290, 315
CviQI GTAC 2 cut(s) 156, 247
DdeI CTNAG 3 cut(s) 51, 126, 255
DpnI GATC 2 cut(s) 59, 212
DpnII GATC 2 cut(s) 57, 210
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 12, 201, 237
EarI CTCTTC 3 cut(s) 12, 201, 237
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 40, 109
Eco88I CYCGRG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 1 cut(s) 226
FaiI YATR 3 cut(s) 38, 224, 296
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 106
HaeIII GGCC 2 cut(s) 120, 290
Hin1II CATG 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 65, 257
Hpy166II GTNNAC 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 222
HpyF3I CTNAG 3 cut(s) 51, 126, 255
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 2 cut(s) 57, 210
LpnPI CCDG 4 cut(s) 85, 102, 112, 135
LweI GCATC 1 cut(s) 120
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 59, 212
MboI GATC 2 cut(s) 57, 210
MboII GAAGA 3 cut(s) 29, 218, 254
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 3 cut(s) 122, 131, 309
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 5 cut(s) 24, 75, 173, 237, 270
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
NdeII GATC 2 cut(s) 57, 210
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 42, 110
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 308
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 42, 110
PspPI GGNCC 2 cut(s) 40, 109
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 2 cut(s) 157, 248
RsaNI GTAC 2 cut(s) 156, 247
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 5 cut(s) 24, 75, 173, 237, 270
Sau3AI GATC 2 cut(s) 57, 210
Sau96I GGNCC 2 cut(s) 40, 109
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 106
SetI ASST 6 cut(s) 87, 114, 144, 183, 203, 301
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 2 cut(s) 40, 109
SmiMI CAYNNNNRTG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 98
TaiI ACGT 1 cut(s) 144
TatI WGTACW 2 cut(s) 155, 246
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 5 cut(s) 24, 75, 173, 237, 270
Tru9I TTAA 5 cut(s) 24, 75, 173, 237, 270
TscAI CASTG 3 cut(s) 121, 130, 313
TspDTI ATGAA 3 cut(s) 57, 95, 255
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 3 cut(s) 121, 130, 313
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 40, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.