Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002037

Physical Location & Seq

Genomic Coordinates Forward (+)

68178904 .. 68184522

Gene Structure 5619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0500600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGAAGAAGCAGACGAGGAGGAGAAGGAAGAAGAGCTCGCCGGCAGATCCCAAGCCGGCCGCTCCCCCCAAAGACGACGCCGAGCAGAAGGCAGTGGCCGCGCTGACGGAGGCCTTCTCGTCGGTCTCAGTCGACGACGCCGTTTCGGCGCTTCGCGAAGCCAACGGCGACCCGGACAAGGCCGCCGAGATTTTGGTCCAGTCTCTGGCTGACACCTCCGACGAGCCGTTCGCGAGCTCCACGTCCAGCGGCGTTTCTGGTTTTGATACCGGCTCCGACGAGCCGTTCACGAGCTCCACGTCGAGCGGCGTTTCCGGTTTTGATACCGGCTCCGACGATCCGTTCACGAGTTCCTCGTCCAGCGGCGTGTCCGGATCTGATACGGGCTCGACTTCCGGGTCGGGTTCGTCCGAGGGGTTTGAGTCGGGCTGTGTTCAGAATTTAGTGATCGAGAGGGGTTTTAGGAATAAGCAGAAGAGGGTGGTTGCCTCGGCCGGAACGGTTTCGAATGTGTTGGGCAAAGAGTATGTGAGGTCGAGGATGACGAAGCTCAGTGGTTCAAAAAATGGAGATGCTGCTGGGGAAGAGGAAGCCGAACAGTTTCTTTGTTCAATGCTTGGAGATGACTCTGAGCTCAACTTGGCTGTTGTTAGAGATGTGCTTTGTCAGTGTGGGTATGATGTTGAAAAGGCCTTGGATTGCTTACTTGAGGTATCTTCGTCCTTGTCTGAACAGCCCAGTCATAGTTCTAACTATAGTTATAAAGAAAATGGTAGATATTCCACCGGACAGTTTGACTCTCTGACAGATAGGGCATCTGATTGTACTTCTTATTCATCCGAGGATAATATATGGTATTCGGGATACGCTCACCGGAATTATGCGGAGGTGCTTGCTAGTTCAGAAGCTCATCATCCCATGAGCCCAAGTAGTACCGAATCGAATCTCCCTCAAAAGGTGTTGGAATCTTTGTTTAACATCTCCAAGACTCCTGAATATGAACCAAAAGCTATGAATTGGAAGAATGTAGTGAATAAGTTGCAGTCATTGGGACCTGAAGTTGATGGTGGCACATCAAGCTCTGCAGAAGCAAAACAAGACACTTCGGCTAAAGGAGATGAATATCATGCATTTAGAGTGACTGCAAGCCAGCACTGGGATTTAATGAAGTCCTACTATCAGAAGGCTGCTACAGCATATTCAAAGGGATCACGGGAGCATGCAGGTTATCTTTCTGAGCAGGGGAGGGTACAGACTAAAATGGCACAGAAGGCTGATGAAAAGGCAAGCAAGGAAATCTTTAAAGCTAGAAACAAGGACATAGAAAACATGATAACAATTGATTTGCATGGGCAGCACGTTAAACAAGCAATGAAGCTTTTGAAAATCCACCTTCTATTTGGAACATATGCACAATCGGTTCAATTCCTCAGGGTTATCACAGGATGTGGGTCACATGGTCTAGGAAAGTCAAAACTGAAACAATCGGTCATACAGCTTGTTGAGAACGAAGGTATTACATGGACTGAAGAGAATCAGGGGGTTGTATTGATAAAGCTAGGTTCACACACGGAGTTCAACTTTATGGATTCCGAGAGTGATGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0018315 GO:0019538 GO:0023052 GO:0032870 GO:0036211 GO:0042040 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

ThiS

Protein Analysis

536

Amino Acids

57.92

Weight (kDa)

5.2

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_At5g58720	PF24767	26 - 67	6.9e-19	At5g58720 UBA-like domain
DUF1771	PF08590	375 - 438	4.3e-17	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002037)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00790 FvH4_7g33470 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520
malus_domestica	MD01G1232800.v1.1 MD07G1305200.v1.1
prunus_persica	Prupe.6G174600_v2.0.a1 Prupe.6G175500_v2.0.a1 Prupe.6G175600_v2.0.a1
pyrus_communis	pycom01g24120 pycom07g24650
rosa_chinensis	RchiOBHm_Chr1g0383441 RchiOBHm_Chr1g0383561 RchiOBHm_Chr1g0383641 RchiOBHm_Chr1g0383731 RchiOBHm_Chr6g0251191
rosa_laevigata	RLG00000015475 RLG00000026100
rosa_multiflora	Rmu_co8276961.1_g000001 Rmu_sc0004077.1_g000010 Rmu_sc0012471.1_g000014 Rmu_sc0012471.1_g000024
rosa_roxburghii	Rroxscaffold_4G00277260 Rroxscaffold_4G00277270 Rroxscaffold_7G00216940
rosa_rugosa	Rorug01G0442000 Rorug05G0500600
rosa_samantha	Rh1AG467500 Rh1AG467700 Rh1BG424700 Rh1BG425100 Rh1CG437800 Rh1CG438000 Rh1DG457500 Rh1DG457900 Rh6AG010000 Rh6BG002000 Rh6CG007100 Rh6DG007600
rosa_wichuraiana	Rw1G040470 Rw1G040490 Rw6G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	1214
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccBSI	CCGCTC	2 cut(s)	62, 306
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	101, 156, 233
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	7 cut(s)	60, 99, 183, 249, 306, 363, 884
AclWI	GGATC	4 cut(s)	41, 332, 382, 1216
AcoI	YGGCCR	3 cut(s)	57, 96, 492
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	1077, 1548
AcyI	GRCGYC	2 cut(s)	78, 138
AfaI	GTAC	3 cut(s)	826, 934, 1251
AfiI	CCNNNNNNNGG	4 cut(s)	178, 205, 955, 1156
AgsI	TTSAA	7 cut(s)	561, 612, 686, 1203, 1384, 1424, 1579
AjiI	CACGTC	2 cut(s)	243, 300
Alw21I	GWGCWC	4 cut(s)	38, 239, 296, 636
Alw26I	GTCTC	2 cut(s)	130, 207
AlwI	GGATC	4 cut(s)	41, 332, 382, 1216
AlwNI	CAGNNNCTG	1 cut(s)	205
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	6 cut(s)	57, 96, 111, 180, 492, 690
ApeKI	GCWGC	3 cut(s)	575, 1187, 1354
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp700I	GAANNNNTTC	2 cut(s)	502, 600
AspLEI	GCGC	2 cut(s)	103, 151
AspS9I	GGNCC	2 cut(s)	196, 1052
AsuC2I	CCSGG	2 cut(s)	173, 397
AsuHPI	GGTGA	1 cut(s)	863
AsuII	TTCGAA	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	196, 1052
AxyI	CCTNAGG	1 cut(s)	1430
BanII	GRGCYC	6 cut(s)	38, 239, 296, 389, 636, 926
BauI	CACGAG	2 cut(s)	289, 346
Bbv12I	GWGCWC	4 cut(s)	38, 239, 296, 636
BbvI	GCAGC	3 cut(s)	562, 1174, 1366
BccI	CCATC	1 cut(s)	1058
BceAI	ACGGC	4 cut(s)	125, 181, 211, 268
BciVI	GTATCC	1 cut(s)	857
BcnI	CCSGG	2 cut(s)	173, 397
BcoDI	GTCTC	2 cut(s)	130, 207
BfaI	CTAG	4 cut(s)	897, 1308, 1463, 1559
BfmI	CTRYAG	3 cut(s)	754, 1083, 1191
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	1214
BfuI	GTATCC	1 cut(s)	857
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	9 cut(s)	60, 99, 183, 250, 307, 364, 576, 1188, 1355
BlsI	GCNGC	9 cut(s)	61, 100, 184, 251, 308, 365, 577, 1189, 1356
Bme1390I	CCNGG	2 cut(s)	173, 397
Bme18I	GGWCC	2 cut(s)	196, 1052
BmgBI	CACGTC	2 cut(s)	243, 300
BmgT120I	GGNCC	2 cut(s)	196, 1052
BmiI	GGNNCC	3 cut(s)	274, 331, 1053
BmrFI	CCNGG	2 cut(s)	173, 397
BmrI	ACTGGG	2 cut(s)	732, 1165
BmsI	GCATC	2 cut(s)	562, 824
BmuI	ACTGGG	2 cut(s)	732, 1165
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu14I	TTCGAA	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	2 cut(s)	173, 397
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaHI	GRCGYC	2 cut(s)	78, 138
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	4 cut(s)	411, 489, 693, 840
BsaWI	WCCGGW	4 cut(s)	314, 371, 785, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 205, 955, 1156
Bse118I	RCCGGY	4 cut(s)	40, 55, 269, 326
Bse1I	ACTGG	3 cut(s)	199, 738, 1160
Bse21I	CCTNAGG	1 cut(s)	1430
Bse3DI	GCAATG	1 cut(s)	1377
Bse8I	GATNNNNATC	1 cut(s)	1122
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	4 cut(s)	411, 489, 693, 840
BseGI	GGATG	4 cut(s)	546, 836, 913, 1451
BseJI	GATNNNNATC	1 cut(s)	1122
BseLI	CCNNNNNNNGG	4 cut(s)	178, 205, 955, 1156
BseMI	GCAATG	1 cut(s)	1377
BseMII	CTCAG	5 cut(s)	141, 565, 621, 1227, 1444
BseNI	ACTGG	3 cut(s)	199, 738, 1160
BseRI	GAGGAG	2 cut(s)	31, 34
BseX3I	CGGCCG	2 cut(s)	57, 492
BseXI	GCAGC	3 cut(s)	562, 1174, 1366
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	3 cut(s)	101, 156, 233
Bsh1285I	CGRYCG	2 cut(s)	60, 495
BshFI	GGCC	6 cut(s)	59, 98, 113, 182, 494, 692
BsiEI	CGRYCG	2 cut(s)	60, 495
BsiHKAI	GWGCWC	4 cut(s)	38, 239, 296, 636
BslFI	GGGAC	1 cut(s)	1065
BslI	CCNNNNNNNGG	4 cut(s)	178, 205, 955, 1156
BsmAI	GTCTC	2 cut(s)	130, 207
BsmFI	GGGAC	1 cut(s)	1065
BsnI	GGCC	6 cut(s)	59, 98, 113, 182, 494, 692
Bso31I	GGTCTC	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	506
Bsp1286I	GDGCHC	6 cut(s)	38, 239, 296, 389, 636, 926
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	5 cut(s)	46, 337, 374, 447, 1208
Bsp68I	TCGCGA	2 cut(s)	156, 233
BspACI	CCGC	7 cut(s)	60, 99, 183, 249, 306, 363, 884
BspANI	GGCC	6 cut(s)	59, 98, 113, 182, 494, 692
BspCNI	CTCAG	5 cut(s)	140, 564, 622, 1228, 1443
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	3 cut(s)	101, 156, 233
BspLI	GGNNCC	3 cut(s)	274, 331, 1053
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	1214
BspPI	GGATC	4 cut(s)	41, 332, 382, 1216
BspQI	GCTCTTC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	2 cut(s)	62, 306
BsrDI	GCAATG	1 cut(s)	1377
BsrFI	RCCGGY	4 cut(s)	40, 55, 269, 326
BsrI	ACTGG	3 cut(s)	199, 738, 1160
BssAI	RCCGGY	4 cut(s)	40, 55, 269, 326
BssECI	CCNNGG	4 cut(s)	411, 489, 693, 840
BssMI	GATC	5 cut(s)	46, 337, 374, 447, 1208
BssNI	GRCGYC	2 cut(s)	78, 138
BssSI	CACGAG	2 cut(s)	289, 346
BssT1I	CCWWGG	1 cut(s)	693
Bst2BI	CACGAG	2 cut(s)	289, 346
Bst4CI	ACNGT	3 cut(s)	502, 600, 792
Bst6I	CTCTTC	4 cut(s)	26, 470, 579, 1524
BstACI	GRCGYC	2 cut(s)	78, 138
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	9 cut(s)	38, 42, 57, 235, 894, 1147, 1151, 1221, 1288
BstDEI	CTNAG	5 cut(s)	127, 551, 630, 1236, 1430
BstF5I	GGATG	4 cut(s)	546, 836, 913, 1451
BstFNI	CGCG	3 cut(s)	101, 156, 233
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	103, 151
BstKTI	GATC	5 cut(s)	49, 340, 377, 450, 1211
BstMAI	GTCTC	2 cut(s)	130, 207
BstMBI	GATC	5 cut(s)	46, 337, 374, 447, 1208
BstMCI	CGRYCG	2 cut(s)	60, 495
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 146, 1077, 1193, 1271, 1354
BstNSI	RCATGY	1 cut(s)	1223
BstSCI	CCNGG	2 cut(s)	171, 395
BstSFI	CTRYAG	3 cut(s)	754, 1083, 1191
BstUI	CGCG	3 cut(s)	101, 156, 233
BstV1I	GCAGC	3 cut(s)	562, 1174, 1366
BstX2I	RGATCY	2 cut(s)	46, 374
BstYI	RGATCY	2 cut(s)	46, 374
BstZI	CGGCCG	2 cut(s)	57, 492
Bsu36I	CCTNAGG	1 cut(s)	1430
BsuI	GTATCC	1 cut(s)	857
BsuRI	GGCC	6 cut(s)	59, 98, 113, 182, 494, 692
BtrI	CACGTC	2 cut(s)	243, 300
BtsCI	GGATG	4 cut(s)	546, 836, 913, 1451
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	4 cut(s)	99, 559, 674, 1153
BtuMI	TCGCGA	2 cut(s)	156, 233
BveI	ACCTGC	1 cut(s)	1214
Cac8I	GCNNGC	9 cut(s)	38, 42, 57, 235, 894, 1147, 1151, 1221, 1288
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	2 cut(s)	103, 151
Cfr10I	RCCGGY	4 cut(s)	40, 55, 269, 326
Cfr13I	GGNCC	2 cut(s)	196, 1052
CseI	GACGC	2 cut(s)	86, 146
Csp6I	GTAC	3 cut(s)	825, 933, 1250
CviAII	CATG	7 cut(s)	919, 1127, 1220, 1330, 1349, 1457, 1521
CviQI	GTAC	3 cut(s)	825, 933, 1250
DdeI	CTNAG	5 cut(s)	127, 551, 630, 1236, 1430
DpnI	GATC	5 cut(s)	48, 339, 376, 449, 1210
DpnII	GATC	5 cut(s)	46, 337, 374, 447, 1208
DraI	TTTAAA	1 cut(s)	1303
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	3 cut(s)	57, 96, 492
EagI	CGGCCG	2 cut(s)	57, 492
Eam1104I	CTCTTC	4 cut(s)	26, 470, 579, 1524
EarI	CTCTTC	4 cut(s)	26, 470, 579, 1524
Ecl136II	GAGCTC	4 cut(s)	36, 237, 294, 634
EclXI	CGGCCG	2 cut(s)	57, 492
Eco130I	CCWWGG	1 cut(s)	693
Eco147I	AGGCCT	2 cut(s)	113, 692
Eco24I	GRGCYC	6 cut(s)	38, 239, 296, 389, 636, 926
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	196, 1052
Eco52I	CGGCCG	2 cut(s)	57, 492
Eco53kI	GAGCTC	4 cut(s)	36, 237, 294, 634
Eco57I	CTGAAG	2 cut(s)	1077, 1548
Eco81I	CCTNAGG	1 cut(s)	1430
EcoICRI	GAGCTC	4 cut(s)	36, 237, 294, 634
EcoO109I	RGGNCCY	1 cut(s)	1052
EcoT14I	CCWWGG	1 cut(s)	693
EcoT22I	ATGCAT	1 cut(s)	1132
EcoT38I	GRGCYC	6 cut(s)	38, 239, 296, 389, 636, 926
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	7 cut(s)	922, 1130, 1223, 1333, 1352, 1460, 1524
FalI	AAGNNNNNCTT	2 cut(s)	1283, 1315
FaqI	GGGAC	1 cut(s)	1065
FatI	CATG	7 cut(s)	918, 1126, 1219, 1329, 1348, 1456, 1520
FauNDI	CATATG	1 cut(s)	1408
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	9 cut(s)	60, 99, 183, 250, 307, 364, 576, 1188, 1355
FokI	GGATG	4 cut(s)	553, 823, 900, 1458
FriOI	GRGCYC	6 cut(s)	38, 239, 296, 389, 636, 926
Fsp4HI	GCNGC	9 cut(s)	60, 99, 183, 250, 307, 364, 576, 1188, 1355
FspBI	CTAG	4 cut(s)	897, 1308, 1463, 1559
GlaI	GCGC	2 cut(s)	102, 150
GluI	GCNGC	9 cut(s)	60, 99, 183, 250, 307, 364, 576, 1188, 1355
GsaI	CCCAGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	59, 98, 113, 182, 494, 692
HgaI	GACGC	2 cut(s)	86, 146
HhaI	GCGC	2 cut(s)	103, 151
Hin1I	GRCGYC	2 cut(s)	78, 138
Hin1II	CATG	7 cut(s)	922, 1130, 1223, 1333, 1352, 1460, 1524
Hin6I	GCGC	2 cut(s)	101, 149
HinP1I	GCGC	2 cut(s)	101, 149
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	1376
HinfI	GANTC	9 cut(s)	422, 626, 797, 938, 943, 965, 988, 1534, 1589
HphI	GGTGA	1 cut(s)	863
Hpy166II	GTNNAC	4 cut(s)	133, 288, 345, 1565
Hpy188III	TCNNGA	8 cut(s)	155, 232, 289, 346, 372, 451, 861, 992
Hpy8I	GTNNAC	4 cut(s)	133, 288, 345, 1565
Hpy99I	CGWCG	8 cut(s)	80, 124, 137, 140, 224, 281, 304, 338
HpyAV	CCTTC	7 cut(s)	18, 82, 124, 1177, 1264, 1403, 1505
HpyCH4III	ACNGT	3 cut(s)	502, 600, 792
HpyCH4IV	ACGT	3 cut(s)	242, 299, 1359
HpyCH4V	TGCA	7 cut(s)	1042, 1085, 1130, 1145, 1223, 1348, 1412
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 146, 1077, 1193, 1271, 1354
HpyF3I	CTNAG	5 cut(s)	127, 551, 630, 1236, 1430
HpySE526I	ACGT	3 cut(s)	242, 299, 1359
Hsp92I	GRCGYC	2 cut(s)	78, 138
Hsp92II	CATG	7 cut(s)	922, 1130, 1223, 1333, 1352, 1460, 1524
HspAI	GCGC	2 cut(s)	101, 149
Kpn2I	TCCGGA	1 cut(s)	371
KroI	GCCGGC	2 cut(s)	40, 55
KroNI	GCCGGC	2 cut(s)	42, 57
Kzo9I	GATC	5 cut(s)	46, 337, 374, 447, 1208
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	6 cut(s)	67, 242, 278, 299, 335, 1216
Lsp1109I	GCAGC	3 cut(s)	562, 1174, 1366
LweI	GCATC	2 cut(s)	562, 824
MaeI	CTAG	4 cut(s)	897, 1308, 1463, 1559
MaeII	ACGT	3 cut(s)	242, 299, 1359
MaeIII	GTNAC	2 cut(s)	1138, 1452
MalI	GATC	5 cut(s)	48, 339, 376, 449, 1210
MbiI	CCGCTC	2 cut(s)	62, 306
MboI	GATC	5 cut(s)	46, 337, 374, 447, 1208
MboII	GAAGA	8 cut(s)	16, 40, 43, 487, 596, 708, 1033, 1541
MfeI	CAATTG	1 cut(s)	1338
MflI	RGATCY	2 cut(s)	46, 374
MhlI	GDGCHC	6 cut(s)	38, 239, 296, 389, 636, 926
MluCI	AATT	5 cut(s)	439, 877, 1015, 1338, 1424
MlyI	GAGTC	4 cut(s)	431, 620, 791, 982
MmeI	TCCRAC	4 cut(s)	243, 300, 357, 942
Mph1103I	ATGCAT	1 cut(s)	1132
MroI	TCCGGA	1 cut(s)	371
MroNI	GCCGGC	2 cut(s)	40, 55
MroXI	GAANNNNTTC	2 cut(s)	502, 600
MseI	TTAA	4 cut(s)	975, 1163, 1302, 1362
MspA1I	CMGCKG	2 cut(s)	249, 363
MspR9I	CCNGG	2 cut(s)	173, 397
MunI	CAATTG	1 cut(s)	1338
MvnI	CGCG	3 cut(s)	101, 156, 233
MwoI	GCNNNNNNNGC	6 cut(s)	98, 146, 1077, 1193, 1271, 1354
NaeI	GCCGGC	2 cut(s)	42, 57
NciI	CCSGG	2 cut(s)	173, 397
NdeI	CATATG	1 cut(s)	1408
NdeII	GATC	5 cut(s)	46, 337, 374, 447, 1208
NgoMIV	GCCGGC	2 cut(s)	40, 55
NlaIII	CATG	7 cut(s)	922, 1130, 1223, 1333, 1352, 1460, 1524
NlaIV	GGNNCC	3 cut(s)	274, 331, 1053
NmeAIII	GCCGAG	3 cut(s)	106, 211, 470
NmuCI	GTSAC	2 cut(s)	1138, 1452
NruI	TCGCGA	2 cut(s)	156, 233
NsiI	ATGCAT	1 cut(s)	1132
NspI	RCATGY	1 cut(s)	1223
NspV	TTCGAA	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	1223
PceI	AGGCCT	2 cut(s)	113, 692
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 296, 353, 542
PdiI	GCCGGC	2 cut(s)	42, 57
PdmI	GAANNNNTTC	2 cut(s)	502, 600
PfeI	GAWTC	5 cut(s)	938, 943, 965, 1534, 1589
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	9 cut(s)	61, 100, 184, 251, 308, 365, 577, 1189, 1356
PleI	GAGTC	4 cut(s)	430, 620, 791, 982
PpsI	GAGTC	4 cut(s)	430, 620, 791, 982
PpuMI	RGGWCCY	1 cut(s)	1052
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	4 cut(s)	38, 239, 296, 636
Psp5II	RGGWCCY	1 cut(s)	1052
PspFI	CCCAGC	1 cut(s)	578
PspN4I	GGNNCC	3 cut(s)	274, 331, 1053
PspPI	GGNCC	2 cut(s)	196, 1052
PspPPI	RGGWCCY	1 cut(s)	1052
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	46, 374
RruI	TCGCGA	2 cut(s)	156, 233
RsaI	GTAC	3 cut(s)	826, 934, 1251
RsaNI	GTAC	3 cut(s)	825, 933, 1250
SacI	GAGCTC	4 cut(s)	38, 239, 296, 636
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	975, 1163, 1302, 1362
SatI	GCNGC	9 cut(s)	60, 99, 183, 250, 307, 364, 576, 1188, 1355
Sau3AI	GATC	5 cut(s)	46, 337, 374, 447, 1208
Sau96I	GGNCC	2 cut(s)	196, 1052
SchI	GAGTC	4 cut(s)	431, 620, 791, 982
ScrFI	CCNGG	2 cut(s)	173, 397
SduI	GDGCHC	6 cut(s)	38, 239, 296, 389, 636, 926
SfaNI	GCATC	2 cut(s)	562, 824
SfcI	CTRYAG	3 cut(s)	754, 1083, 1191
SfuI	TTCGAA	1 cut(s)	506
SinI	GGWCC	2 cut(s)	196, 1052
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
SphI	GCATGC	1 cut(s)	1223
Sse9I	AATT	5 cut(s)	439, 877, 1015, 1338, 1424
SseBI	AGGCCT	2 cut(s)	113, 692
SsiI	CCGC	7 cut(s)	60, 99, 183, 249, 306, 363, 884
SspMI	CTAG	4 cut(s)	897, 1308, 1463, 1559
SstI	GAGCTC	4 cut(s)	38, 239, 296, 636
StuI	AGGCCT	2 cut(s)	113, 692
StyD4I	CCNGG	2 cut(s)	171, 395
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	3 cut(s)	502, 600, 792
TaiI	ACGT	3 cut(s)	245, 302, 1362
TaqI	TCGA	7 cut(s)	132, 302, 389, 450, 506, 536, 941
TaqII	GACCGA	2 cut(s)	112, 1477
TasI	AATT	5 cut(s)	439, 877, 1015, 1338, 1424
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	6 cut(s)	62, 101, 185, 252, 309, 366
TfiI	GAWTC	5 cut(s)	938, 943, 965, 1534, 1589
Tru1I	TTAA	4 cut(s)	975, 1163, 1302, 1362
Tru9I	TTAA	4 cut(s)	975, 1163, 1302, 1362
TscAI	CASTG	4 cut(s)	99, 559, 674, 1160
TseFI	GTSAC	2 cut(s)	1138, 1452
TseI	GCWGC	3 cut(s)	575, 1187, 1354
Tsp45I	GTSAC	2 cut(s)	1138, 1452
TspDTI	ATGAA	8 cut(s)	17, 825, 1014, 1028, 1134, 1181, 1293, 1388
TspGWI	ACGGA	3 cut(s)	122, 330, 1586
TspRI	CASTG	4 cut(s)	99, 559, 674, 1160
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	196, 1052
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	1223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1397
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	2 cut(s)	502, 600
XspI	CTAG	4 cut(s)	897, 1308, 1463, 1559
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.