RchiOBHm_Chr6g0251191

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002037
Physical Location & Seq
Forward (+)
6501278 .. 6502241
964 bp
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UTR
Exon/CDS
Intron
PRQ22520

Sequence Viewer

Length: 705 bp
ATGGGACTGATTTCAAACAAGATTCATAGGGGCAACCTCCAGCCAGGAGATCACATCTACAGCTTCAGAAAATGGAAGTCATACTCCCACCATGGAATATTTGTGGAGTCAGATAAGGTGATCCACTACACCAAAACCAGAAAAGAGGAACCAGCAAATAAACTGAGACGAAGGCCTGCTTGCAAAAAATGTGGTTTCGACCGAAAAGTTCATCGAGGAGTAGTCATATCTTGCCTTGATTGCTTTCTTTCAGGCTACGAGCTTTATCGGTTTGATTATGAAGTCCCCTATCACCATTTCCTCTTCAAGAGGTCAGGAACTTGCAGCACCGGAAGCTGTGATGACCCTGCTGCAGTTATAAGCCGTGCCACGGCCTTGCTCAACAGCCAAGATGGTTTTGGTGATTACAACCTTCTCGAAAACAATTGCGAATGCTTTGCGATTTACTGCAAAACAGGGAAGCATATGAGCGAGCAGGCATGTTCTGCCAAACTTACTATTAGAGCTGTTGCCCAAGCTATCTTGGATCAAAACTCTGGTAGGCTTCTTGAAGATGTGAGAGTTCATGACCCGGACAATTACATGAACCTGAAGGAGAAGATTGACAAGTTGATTCCGTTGCCGTTAAACGAAATCATTGCCATTCTCGGAAAGCTTAATGAAAATGAGGAAGACGTTGAGGAATTAGAGACAATGGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

234

Amino Acids

26.78

Weight (kDa)

7.12

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 155 4.9e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AclWI GGATC 2 cut(s) 115, 534
AcuI CTGAAG 2 cut(s) 49, 611
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 3 cut(s) 15, 307, 551
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 6 cut(s) 63, 262, 336, 506, 518, 655
AluI AGCT 6 cut(s) 63, 262, 336, 506, 518, 655
Alw26I GTCTC 2 cut(s) 160, 683
AlwI GGATC 2 cut(s) 115, 534
AoxI GGCC 2 cut(s) 173, 372
ApeKI GCWGC 2 cut(s) 324, 350
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 130, 284, 413
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 336, 337
BccI CCATC 1 cut(s) 386
BceAI ACGGC 3 cut(s) 348, 387, 607
BcgI CGANNNNNNTGC 4 cut(s) 419, 453, 620, 654
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 160, 683
BfmI CTRYAG 2 cut(s) 58, 351
BisI GCNGC 2 cut(s) 325, 351
BlsI GCNGC 2 cut(s) 326, 352
Bme1390I CCNGG 2 cut(s) 45, 572
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 45, 572
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 91, 369
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 91, 369
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 336, 337
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 175, 374
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 330, 572
BslFI GGGAC 2 cut(s) 18, 269
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 2 cut(s) 160, 683
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 18, 269
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 2 cut(s) 175, 374
Bsp143I GATC 3 cut(s) 49, 120, 526
Bsp19I CCATGG 1 cut(s) 91
BspANI GGCC 2 cut(s) 175, 374
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 2 cut(s) 115, 534
BsrDI GCAATG 1 cut(s) 636
BssECI CCNNGG 2 cut(s) 91, 369
BssMI GATC 3 cut(s) 49, 120, 526
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 4 cut(s) 177, 181, 473, 477
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 2 cut(s) 91, 369
BstKTI GATC 3 cut(s) 52, 123, 529
BstMAI GTCTC 2 cut(s) 160, 683
BstMBI GATC 3 cut(s) 49, 120, 526
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 240, 333, 485
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 43, 570
BstSFI CTRYAG 2 cut(s) 58, 351
BstV1I GCAGC 2 cut(s) 336, 337
BstV2I GAAGAC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 175, 374
BtgI CCRYGG 2 cut(s) 91, 369
Cac8I GCNNGC 4 cut(s) 177, 181, 473, 477
CciI TCATGA 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 4 cut(s) 92, 480, 566, 583
DdeI CTNAG 1 cut(s) 164
DpnI GATC 3 cut(s) 51, 122, 528
DpnII GATC 3 cut(s) 49, 120, 526
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 91
Eco147I AGGCCT 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 49, 611
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 4 cut(s) 95, 483, 569, 586
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 2 cut(s) 18, 269
FatI CATG 4 cut(s) 91, 479, 565, 582
FauNDI CATATG 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 325, 351
Fsp4HI GCNGC 2 cut(s) 325, 351
GluI GCNGC 2 cut(s) 325, 351
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 2 cut(s) 175, 374
HapII CCGG 2 cut(s) 330, 572
Hin1II CATG 4 cut(s) 95, 483, 569, 586
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 3 cut(s) 22, 107, 613
HpaII CCGG 2 cut(s) 330, 572
HphI GGTGA 3 cut(s) 130, 284, 413
Hpy188I TCNGA 3 cut(s) 68, 112, 650
Hpy188III TCNNGA 5 cut(s) 307, 315, 416, 548, 566
HpyAV CCTTC 3 cut(s) 165, 422, 586
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 4 cut(s) 183, 324, 353, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 333, 485
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 4 cut(s) 95, 483, 569, 586
Kzo9I GATC 3 cut(s) 49, 120, 526
Lsp1109I GCAGC 2 cut(s) 336, 337
MaeII ACGT 1 cut(s) 675
MalI GATC 3 cut(s) 51, 122, 528
MboI GATC 3 cut(s) 49, 120, 526
MboII GAAGA 4 cut(s) 295, 563, 610, 683
MfeI CAATTG 1 cut(s) 424
MluCI AATT 3 cut(s) 424, 577, 683
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 7 cut(s) 47, 139, 209, 303, 311, 661, 673
MseI TTAA 2 cut(s) 626, 657
MspI CCGG 2 cut(s) 330, 572
MspR9I CCNGG 2 cut(s) 45, 572
MunI CAATTG 1 cut(s) 424
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 240, 333, 485
NciI CCSGG 1 cut(s) 572
NcoI CCATGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 465
NdeII GATC 3 cut(s) 49, 120, 526
NlaIII CATG 4 cut(s) 95, 483, 569, 586
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 1 cut(s) 483
PagI TCATGA 1 cut(s) 565
PceI AGGCCT 1 cut(s) 175
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 22, 613
PkrI GCNGC 2 cut(s) 326, 352
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 355
SaqAI TTAA 2 cut(s) 626, 657
SatI GCNGC 2 cut(s) 325, 351
Sau3AI GATC 3 cut(s) 49, 120, 526
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 45, 572
SfcI CTRYAG 2 cut(s) 58, 351
Sse9I AATT 3 cut(s) 424, 577, 683
SseBI AGGCCT 1 cut(s) 175
SspI AATATT 1 cut(s) 99
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 43, 570
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 678
TaqI TCGA 3 cut(s) 198, 214, 417
TaqII GACCGA 1 cut(s) 216
TasI AATT 3 cut(s) 424, 577, 683
TfiI GAWTC 2 cut(s) 22, 613
Tru1I TTAA 2 cut(s) 626, 657
Tru9I TTAA 2 cut(s) 626, 657
TseI GCWGC 2 cut(s) 324, 350
TspDTI ATGAA 6 cut(s) 14, 200, 294, 554, 599, 675
TspGWI ACGGA 1 cut(s) 606
XceI RCATGY 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.