RLG00000026100

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002037
Physical Location & Seq
Reverse (-)
525110 .. 526126
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026100

Sequence Viewer

Length: 684 bp
ATGGAGCATATTACAAACAAGATCGTTAGAGAGAGCCTCAAGCCTGGAGATCACATCTATGCTTACAGAAAACTGCACTCCTACTCTCACCATGGTATCTTCATTGGGGGAGATAGAGTGATTCACTATAACAAAACACAGGAAGGAAACACATCGAAACGAGTCAAGCAGTGCAAAAACTGCGGGGTTGACAAAAACCATTTCCAAGGAGTCGTCAAGTCCTGCGTCAACTGCTTCCTCAAAGGCCACACTCTCCGCTGCTTCCAATACGCAGTCGGTTACGGCCGCTACCTCACCAACTGGCCAGGCACATGTACCACTGGTCTTGCTCACCCTCCAGAAGTGACCATCAAACGCGCCAATGACCTGTTTAACAAGAAAGATGGGTTTGGCGACTATAACTTGTTTGAGAACAACTGCGAGGCGTTTGCGGTGTTCTGCAAGACGGAGAAGCGCGTGAGCGACCAGGCGTTCTGGGCTATATCGCTGATCAAGGCTAATGCGAAGGTGGCGATGGATAGGCTTCTTCGTGATGTGTCGGTTCATCACGGCGAGGAGAAGCACAACAAGTTGAAGCAGAGGATTGATAGCTGGCTCGCCAATATGTCGTCGCTTAAACAGATGATTGCCAATCTTGAAAAGGATCAGGAGGGTCATCAACTCATGATCACCGGCGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

228

Amino Acids

25.89

Weight (kDa)

9.28

Isoelectric Point (pI)

27.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 152 2.6e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 357, 456
AciI CCGC 4 cut(s) 183, 256, 286, 431
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 2 cut(s) 283, 302
AfaI GTAC 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 2 cut(s) 574, 638
AjnI CCWGG 3 cut(s) 43, 304, 465
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
AlwI GGATC 1 cut(s) 651
AoxI GGCC 3 cut(s) 244, 283, 302
ApeKI GCWGC 1 cut(s) 258
AspLEI GCGC 3 cut(s) 359, 456, 677
AsuHPI GGTGA 4 cut(s) 80, 286, 323, 661
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 1 cut(s) 304
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 356, 377, 508
BceAI ACGGC 2 cut(s) 298, 565
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 45, 306, 467
BclI TGATCA 2 cut(s) 489, 666
BisI GCNGC 2 cut(s) 259, 286
BlsI GCNGC 2 cut(s) 260, 287
Bme1390I CCNGG 3 cut(s) 45, 306, 467
BmrFI CCNGG 3 cut(s) 45, 306, 467
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 2 cut(s) 66, 321
BpuEI CTTGAG 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 91, 205
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 305, 325
BseBI CCWGG 3 cut(s) 45, 306, 467
BseDI CCNNGG 2 cut(s) 91, 205
BseNI ACTGG 2 cut(s) 305, 325
BseRI GAGGAG 1 cut(s) 569
BseX3I CGGCCG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 357, 456
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 3 cut(s) 246, 285, 304
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 672
BsnI GGCC 3 cut(s) 246, 285, 304
Bsp143I GATC 5 cut(s) 21, 49, 489, 643, 666
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 4 cut(s) 183, 256, 286, 431
BspANI GGCC 3 cut(s) 246, 285, 304
BspFNI CGCG 2 cut(s) 357, 456
BspHI TCATGA 2 cut(s) 663, 680
BspPI GGATC 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 2 cut(s) 305, 325
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 2 cut(s) 91, 205
BssMI GATC 5 cut(s) 21, 49, 489, 643, 666
BssT1I CCWWGG 2 cut(s) 91, 205
Bst2UI CCWGG 3 cut(s) 45, 306, 467
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 593, 597
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 2 cut(s) 357, 456
BstHHI GCGC 3 cut(s) 359, 456, 677
BstKTI GATC 5 cut(s) 24, 52, 492, 646, 669
BstMBI GATC 5 cut(s) 21, 49, 489, 643, 666
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 4 cut(s) 180, 231, 476, 509
BstNI CCWGG 3 cut(s) 45, 306, 467
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 43, 304, 465
BstUI CGCG 2 cut(s) 357, 456
BstV1I GCAGC 1 cut(s) 245
BstZI CGGCCG 1 cut(s) 283
BsuRI GGCC 3 cut(s) 246, 285, 304
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 527
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 176, 318
Cac8I GCNNGC 2 cut(s) 593, 597
CciI TCATGA 2 cut(s) 663, 680
CfoI GCGC 3 cut(s) 359, 456, 677
Cfr10I RCCGGY 1 cut(s) 671
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 4 cut(s) 92, 312, 664, 681
CviQI GTAC 1 cut(s) 315
DpnI GATC 5 cut(s) 23, 51, 491, 645, 668
DpnII GATC 5 cut(s) 21, 49, 489, 643, 666
EaeI YGGCCR 2 cut(s) 283, 302
EagI CGGCCG 1 cut(s) 283
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 91, 205
Eco52I CGGCCG 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 43, 304, 465
EcoT14I CCWWGG 2 cut(s) 91, 205
ErhI CCWWGG 2 cut(s) 91, 205
FaeI CATG 4 cut(s) 95, 315, 667, 684
FatI CATG 4 cut(s) 91, 311, 663, 680
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 2 cut(s) 489, 666
Fnu4HI GCNGC 2 cut(s) 259, 286
Fsp4HI GCNGC 2 cut(s) 259, 286
GlaI GCGC 3 cut(s) 358, 455, 676
GluI GCNGC 2 cut(s) 259, 286
GsuI CTGGAG 2 cut(s) 66, 321
HaeIII GGCC 3 cut(s) 246, 285, 304
HapII CCGG 1 cut(s) 672
HgaI GACGC 1 cut(s) 214
HhaI GCGC 3 cut(s) 359, 456, 677
Hin1II CATG 4 cut(s) 95, 315, 667, 684
Hin6I GCGC 3 cut(s) 357, 454, 675
HinP1I GCGC 3 cut(s) 357, 454, 675
HincII GTYRAC 2 cut(s) 190, 229
HindII GTYRAC 2 cut(s) 190, 229
HinfI GANTC 3 cut(s) 121, 162, 210
HpaII CCGG 1 cut(s) 672
HphI GGTGA 4 cut(s) 80, 286, 323, 661
Hpy166II GTNNAC 2 cut(s) 190, 229
Hpy188III TCNNGA 6 cut(s) 338, 530, 635, 647, 664, 681
Hpy8I GTNNAC 2 cut(s) 190, 229
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 2 cut(s) 137, 499
HpyCH4V TGCA 3 cut(s) 76, 174, 441
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 231, 476, 509
Hsp92II CATG 4 cut(s) 95, 315, 667, 684
HspAI GCGC 3 cut(s) 357, 454, 675
Ksp22I TGATCA 2 cut(s) 489, 666
Kzo9I GATC 5 cut(s) 21, 49, 489, 643, 666
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 278, 343
MalI GATC 5 cut(s) 23, 51, 491, 645, 668
MboI GATC 5 cut(s) 21, 49, 489, 643, 666
MboII GAAGA 2 cut(s) 91, 518
MlsI TGGCCA 1 cut(s) 304
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 2 cut(s) 171, 219
MnlI CCTC 8 cut(s) 47, 248, 302, 345, 415, 547, 573, 643
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MseI TTAA 2 cut(s) 372, 615
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 304
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 3 cut(s) 45, 306, 467
MvaI CCWGG 3 cut(s) 45, 306, 467
MvnI CGCG 2 cut(s) 357, 456
MwoI GCNNNNNNNGC 4 cut(s) 180, 231, 476, 509
NcoI CCATGG 1 cut(s) 91
NdeII GATC 5 cut(s) 21, 49, 489, 643, 666
NlaIII CATG 4 cut(s) 95, 315, 667, 684
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 315
PagI TCATGA 2 cut(s) 663, 680
PciI ACATGT 1 cut(s) 311
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 260, 287
PleI GAGTC 2 cut(s) 170, 218
PpsI GAGTC 2 cut(s) 170, 218
PscI ACATGT 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 43, 304, 465
PspGI CCWGG 3 cut(s) 43, 304, 465
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 372, 615
SatI GCNGC 2 cut(s) 259, 286
Sau3AI GATC 5 cut(s) 21, 49, 489, 643, 666
SchI GAGTC 2 cut(s) 171, 219
ScrFI CCNGG 3 cut(s) 45, 306, 467
SetI ASST 4 cut(s) 294, 369, 510, 593
SgrAI CRCCGGYG 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 4 cut(s) 183, 256, 286, 431
StyD4I CCNGG 3 cut(s) 43, 304, 465
StyI CCWWGG 2 cut(s) 91, 205
TaqI TCGA 1 cut(s) 155
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 372, 615
Tru9I TTAA 2 cut(s) 372, 615
TscAI CASTG 2 cut(s) 176, 325
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 91, 533
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 176, 325
XceI RCATGY 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.