Rw1G040490

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002037
Physical Location & Seq
Reverse (-)
67749064 .. 67749883
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040490.1

Sequence Viewer

Length: 681 bp
ATGGAGCAGATTACAAACAAGATCGATAGAGAGAGCCTCAGGCCTGGAGATCACATCTATGCTTACAGAAAAATATTGCACTTATACTCTCACCATGGTATCTTCATTGGGGGAGATAGAGTGATTCACTATAACAAAACACAGGAAGGAAACACATCGAAACGAGTCAAGCAGTGCAAAAACTGCGGGGTTGACAAAAACCACTTCCAAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAAAGGCCACACTCTCCGCCGCTTCCAATACGCAGTCGGCTACGGCCGCTACCTCACCAACGTGCCAGGCACATGCACCACTGGTCGTGCTCTCCCGCCAGAAGTGACCATCCGCCGCGCCAATGACCTGTTTAACAATGGGTTTGGGGACTATAACTTGTTTGAGAACAACTGCGAGGCGTTTGCGGTGTTCTGCAAGACGGAGAAACGCGTGAGCGACCAGTCGTGCTCGGCTATATTGCTCTTTAAGGTTACTGTGAAGATGGCGAAGGATAGGCTTCTTCGTGATGTGTTGGTTCATCACGGCGAGGAGAAGCACAACGAGTTGAGGCAGAGGATTGATAGCTGCCTCGCTAATATGTCGTCGCTTAAACAGATCATTGCCAATTTTGAACAGGATCAGGAGGGTCATCAACTCATGACCACCGGCGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

226

Amino Acids

25.8

Weight (kDa)

9.03

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 151 4.2e-25 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 360, 453
AciI CCGC 8 cut(s) 186, 259, 262, 289, 338, 355, 358, 428
AclWI GGATC 1 cut(s) 648
AcoI YGGCCR 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 1 cut(s) 635
AjnI CCWGG 2 cut(s) 43, 307
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 1 cut(s) 588
AluI AGCT 1 cut(s) 588
Alw21I GWGCWC 2 cut(s) 334, 473
AlwI GGATC 1 cut(s) 648
AoxI GGCC 3 cut(s) 41, 247, 286
ApeKI GCWGC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 362, 674
AsuHPI GGTGA 2 cut(s) 83, 289
AxyI CCTNAGG 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
Bbv12I GWGCWC 2 cut(s) 334, 473
BbvI GCAGC 1 cut(s) 575
BccI CCATC 2 cut(s) 359, 499
BceAI ACGGC 2 cut(s) 301, 562
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 2 cut(s) 45, 309
BisI GCNGC 4 cut(s) 262, 289, 358, 589
BlsI GCNGC 4 cut(s) 263, 290, 359, 590
Bme1390I CCNGG 2 cut(s) 45, 309
BmrFI CCNGG 2 cut(s) 45, 309
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 94, 208
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 2 cut(s) 328, 463
Bse21I CCTNAGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 2 cut(s) 45, 309
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 94, 208
BseGI GGATG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 328, 463
BseRI GAGGAG 1 cut(s) 566
BseX3I CGGCCG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 575
Bsh1236I CGCG 2 cut(s) 360, 453
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 3 cut(s) 43, 249, 288
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 334, 473
BsiSI CCGG 1 cut(s) 669
BslFI GGGAC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 3 cut(s) 43, 249, 288
Bsp1286I GDGCHC 2 cut(s) 334, 473
Bsp143I GATC 4 cut(s) 21, 49, 618, 640
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 8 cut(s) 186, 259, 262, 289, 338, 355, 358, 428
BspANI GGCC 3 cut(s) 43, 249, 288
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 2 cut(s) 360, 453
BspHI TCATGA 2 cut(s) 660, 677
BspPI GGATC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 668
BsrI ACTGG 2 cut(s) 328, 463
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 2 cut(s) 94, 208
BssMI GATC 4 cut(s) 21, 49, 618, 640
BssT1I CCWWGG 2 cut(s) 94, 208
Bst2UI CCWGG 2 cut(s) 45, 309
Bst4CI ACNGT 1 cut(s) 499
BstAPI GCANNNNNTGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 2 cut(s) 360, 453
BstHHI GCGC 2 cut(s) 362, 674
BstKTI GATC 4 cut(s) 24, 52, 621, 643
BstMBI GATC 4 cut(s) 21, 49, 618, 640
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 183, 234, 288
BstNI CCWGG 2 cut(s) 45, 309
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 43, 307
BstUI CGCG 2 cut(s) 360, 453
BstV1I GCAGC 1 cut(s) 575
BstZI CGGCCG 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 3 cut(s) 43, 249, 288
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 2 cut(s) 179, 321
CciI TCATGA 2 cut(s) 660, 677
CfoI GCGC 2 cut(s) 362, 674
Cfr10I RCCGGY 1 cut(s) 668
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 217
CviAII CATG 4 cut(s) 95, 315, 661, 678
CviJI RGCY 8 cut(s) 36, 43, 249, 282, 288, 476, 520, 588
CviKI_1 RGCY 8 cut(s) 36, 43, 249, 282, 288, 476, 520, 588
DdeI CTNAG 1 cut(s) 38
DpnI GATC 4 cut(s) 23, 51, 620, 642
DpnII GATC 4 cut(s) 21, 49, 618, 640
EaeI YGGCCR 1 cut(s) 286
EagI CGGCCG 1 cut(s) 286
EciI GGCGGA 2 cut(s) 248, 344
EclXI CGGCCG 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 94, 208
Eco147I AGGCCT 1 cut(s) 43
Eco52I CGGCCG 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 43, 307
EcoT14I CCWWGG 2 cut(s) 94, 208
ErhI CCWWGG 2 cut(s) 94, 208
FaeI CATG 4 cut(s) 98, 318, 664, 681
FaqI GGGAC 1 cut(s) 404
FatI CATG 4 cut(s) 94, 314, 660, 677
FauI CCCGC 2 cut(s) 179, 345
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 262, 289, 358, 589
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 262, 289, 358, 589
GlaI GCGC 2 cut(s) 361, 673
GluI GCNGC 4 cut(s) 262, 289, 358, 589
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 43, 249, 288
HapII CCGG 1 cut(s) 669
HgaI GACGC 1 cut(s) 217
HhaI GCGC 2 cut(s) 362, 674
Hin1II CATG 4 cut(s) 98, 318, 664, 681
Hin6I GCGC 2 cut(s) 360, 672
HinP1I GCGC 2 cut(s) 360, 672
HincII GTYRAC 2 cut(s) 193, 232
HindII GTYRAC 2 cut(s) 193, 232
HinfI GANTC 3 cut(s) 124, 165, 213
HpaII CCGG 1 cut(s) 669
HphI GGTGA 2 cut(s) 83, 289
Hpy166II GTNNAC 2 cut(s) 193, 232
Hpy188III TCNNGA 4 cut(s) 527, 644, 661, 678
Hpy8I GTNNAC 2 cut(s) 193, 232
Hpy99I CGWCG 2 cut(s) 233, 610
HpyAV CCTTC 2 cut(s) 140, 505
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 79, 177, 318, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 234, 288
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 4 cut(s) 98, 318, 664, 681
HspAI GCGC 2 cut(s) 360, 672
Kzo9I GATC 4 cut(s) 21, 49, 618, 640
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 575
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 346, 493
MalI GATC 4 cut(s) 23, 51, 620, 642
MboI GATC 4 cut(s) 21, 49, 618, 640
MboII GAAGA 3 cut(s) 94, 514, 515
MhlI GDGCHC 2 cut(s) 334, 473
MluCI AATT 1 cut(s) 628
MluI ACGCGT 1 cut(s) 451
MlyI GAGTC 2 cut(s) 174, 222
MnlI CCTC 9 cut(s) 47, 251, 305, 412, 544, 564, 570, 602, 640
MseI TTAA 3 cut(s) 375, 489, 612
MslI CAYNNNNRTG 2 cut(s) 57, 302
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 2 cut(s) 45, 309
MvaI CCWGG 2 cut(s) 45, 309
MvnI CGCG 2 cut(s) 360, 453
MwoI GCNNNNNNNGC 3 cut(s) 183, 234, 288
NcoI CCATGG 1 cut(s) 94
NdeII GATC 4 cut(s) 21, 49, 618, 640
NlaIII CATG 4 cut(s) 98, 318, 664, 681
NmeAIII GCCGAG 1 cut(s) 452
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 302
PagI TCATGA 2 cut(s) 660, 677
PceI AGGCCT 1 cut(s) 43
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 263, 290, 359, 590
PleI GAGTC 2 cut(s) 173, 221
PpsI GAGTC 2 cut(s) 173, 221
Psp6I CCWGG 2 cut(s) 43, 307
PspGI CCWGG 2 cut(s) 43, 307
RseI CAYNNNNRTG 2 cut(s) 57, 302
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 375, 489, 612
SatI GCNGC 4 cut(s) 262, 289, 358, 589
Sau3AI GATC 4 cut(s) 21, 49, 618, 640
SchI GAGTC 2 cut(s) 174, 222
ScrFI CCNGG 2 cut(s) 45, 309
SduI GDGCHC 2 cut(s) 334, 473
SetI ASST 5 cut(s) 297, 306, 372, 495, 590
SgrAI CRCCGGYG 1 cut(s) 668
SmiMI CAYNNNNRTG 2 cut(s) 57, 302
Sse9I AATT 1 cut(s) 628
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 8 cut(s) 186, 259, 262, 289, 338, 355, 358, 428
SspI AATATT 1 cut(s) 75
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 43, 307
StyI CCWWGG 2 cut(s) 94, 208
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 24, 158, 231
TasI AATT 1 cut(s) 628
TauI GCSGC 3 cut(s) 264, 291, 360
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 3 cut(s) 375, 489, 612
Tru9I TTAA 3 cut(s) 375, 489, 612
TscAI CASTG 2 cut(s) 179, 328
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 94, 530
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 179, 328
XceI RCATGY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.