RchiOBHm_Chr1g0383561

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002037
Physical Location & Seq
Forward (+)
67821250 .. 67821856
607 bp
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UTR
Exon/CDS
Intron
PRQ60649

Sequence Viewer

Length: 513 bp
ATGGAGTATATTACAAACAAGATCGATAGAGAGAGCCTCAAGCCTGGAGATCACATCTATGCTTACAGAAAATTGCACTCCTACTCTCACCATGGTATCTTCATTGGGGGAGATAGAGTGATTCACTATAACAAAACACAAGAAGGAAACACATCGAAACGAGTCAAGCAGTACTGCAAAAACTGCGGGATAGACGAAAACCCCCTTCGAGGAGTCGTCAACTCCTGCGTCGACTGCTTCCTCAAACGCCACACCCTCCGCCGCTTCCAATACGCCGTGGGTAAAGGCCGCTACCTCCTCAGCTGGCCAGGCACATGCACTACTGATCCTGCTGAACAGCCAGGAGTGACCATCAGACGAGCCAATGACTTGTTTAACAATAAAGTTGGGTTCGGGGACTACAACTTGTTTGAGAACAACTGCGAGGCATTCGCGGTTTTCTGCAAGACGGGGAATCGTGTGAGCCACCAGGCGTACTCAGCCAAGTTTTGGACCAAGCCTTCTTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

9.34

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 153 8.7e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 489
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 434
AciI CCGC 5 cut(s) 186, 259, 262, 289, 434
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 305
AfaI GTAC 2 cut(s) 173, 476
AfiI CCNNNNNNNGG 2 cut(s) 209, 489
AjnI CCWGG 4 cut(s) 43, 307, 340, 468
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
AlwI GGATC 1 cut(s) 320
AoxI GGCC 2 cut(s) 286, 305
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 1 cut(s) 307
BbvCI CCTCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 359
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 4 cut(s) 45, 309, 342, 470
BisI GCNGC 2 cut(s) 262, 289
BlsI GCNGC 2 cut(s) 263, 290
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 4 cut(s) 45, 309, 342, 470
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmrFI CCNGG 4 cut(s) 45, 309, 342, 470
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 91, 276
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 489
BseBI CCWGG 4 cut(s) 45, 309, 342, 470
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 91, 276
BseLI CCNNNNNNNGG 2 cut(s) 209, 489
BseMII CTCAG 2 cut(s) 313, 492
BseRI GAGGAG 2 cut(s) 225, 287
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 2 cut(s) 288, 307
BshVI ATCGAT 1 cut(s) 24
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 209, 489
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 2 cut(s) 288, 307
Bsp143I GATC 3 cut(s) 21, 49, 325
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 5 cut(s) 186, 259, 262, 289, 434
BspANI GGCC 2 cut(s) 288, 307
BspCNI CTCAG 2 cut(s) 312, 491
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 434
BspPI GGATC 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 91, 276
BssMI GATC 3 cut(s) 21, 49, 325
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 4 cut(s) 45, 309, 342, 470
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 299, 478
BstDSI CCRYGG 2 cut(s) 91, 276
BstFNI CGCG 1 cut(s) 434
BstKTI GATC 3 cut(s) 24, 52, 328
BstMBI GATC 3 cut(s) 21, 49, 325
BstMWI GCNNNNNNNGC 4 cut(s) 183, 234, 309, 479
BstNI CCWGG 4 cut(s) 45, 309, 342, 470
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 4 cut(s) 43, 307, 340, 468
BstUI CGCG 1 cut(s) 434
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 288, 307
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 91, 276
Cac8I GCNNGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 492
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 172, 475
CviAII CATG 2 cut(s) 92, 315
CviQI GTAC 2 cut(s) 172, 475
DdeI CTNAG 2 cut(s) 299, 478
DpnI GATC 3 cut(s) 23, 51, 327
DpnII GATC 3 cut(s) 21, 49, 325
EaeI YGGCCR 1 cut(s) 305
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 492
EcoRII CCWGG 4 cut(s) 43, 307, 340, 468
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 95, 318
FaiI YATR 5 cut(s) 9, 60, 93, 129, 316
FaqI GGGAC 1 cut(s) 410
FatI CATG 2 cut(s) 91, 314
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 262, 289
Fsp4HI GCNGC 2 cut(s) 262, 289
GluI GCNGC 2 cut(s) 262, 289
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 288, 307
HgaI GACGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 95, 318
HincII GTYRAC 2 cut(s) 220, 232
HindII GTYRAC 2 cut(s) 220, 232
HinfI GANTC 4 cut(s) 121, 162, 213, 454
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 220, 232
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 2 cut(s) 220, 232
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 137, 215, 510
HpyCH4V TGCA 4 cut(s) 76, 177, 318, 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 234, 309, 479
HpyF3I CTNAG 2 cut(s) 299, 478
Hsp92II CATG 2 cut(s) 95, 318
Kzo9I GATC 3 cut(s) 21, 49, 325
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 23, 51, 327
MboI GATC 3 cut(s) 21, 49, 325
MboII GAAGA 3 cut(s) 91, 495, 498
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 307
MlyI GAGTC 2 cut(s) 171, 222
MnlI CCTC 7 cut(s) 47, 203, 251, 266, 305, 308, 418
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 4 cut(s) 45, 309, 342, 470
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 4 cut(s) 45, 309, 342, 470
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 183, 234, 309, 479
NcoI CCATGG 1 cut(s) 91
NdeII GATC 3 cut(s) 21, 49, 325
NlaIII CATG 2 cut(s) 95, 318
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 318
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 121, 454
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 2 cut(s) 263, 290
PleI GAGTC 2 cut(s) 170, 221
PpsI GAGTC 2 cut(s) 170, 221
Psp6I CCWGG 4 cut(s) 43, 307, 340, 468
PspGI CCWGG 4 cut(s) 43, 307, 340, 468
PspPI GGNCC 1 cut(s) 492
PvuII CAGCTG 1 cut(s) 303
RsaI GTAC 2 cut(s) 173, 476
RsaNI GTAC 2 cut(s) 172, 475
RseI CAYNNNNRTG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 262, 289
Sau3AI GATC 3 cut(s) 21, 49, 325
Sau96I GGNCC 1 cut(s) 492
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 171, 222
ScrFI CCNGG 4 cut(s) 45, 309, 342, 470
SetI ASST 2 cut(s) 297, 305
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 71
SsiI CCGC 5 cut(s) 186, 259, 262, 289, 434
StyD4I CCNGG 4 cut(s) 43, 307, 340, 468
StyI CCWWGG 1 cut(s) 91
TaqI TCGA 4 cut(s) 24, 155, 208, 231
TasI AATT 1 cut(s) 71
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 264, 291
TfiI GAWTC 2 cut(s) 121, 454
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 492
XceI RCATGY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.