Prupe.6G175600_v2.0.a1

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002037
Physical Location & Seq
Reverse (-)
17996749 .. 17997448
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G175600.1

Sequence Viewer

Length: 486 bp
ATGGGAATATTTTCAAACAGGATTTTTAGGGAGGAGCTCCGCCCAGGAGATCACATCTATGCTTATAGACGCTGGCATAGATATTCCCACCATGATATTCATTCAAATATCAATGCAACAAATGATCCAAAAAGTAGTAGCTCATCTAGAGAGTCTCCATGTGGAAAGTGCAGGCATGACCCAAACTCGAAACGGGGAAAAGGAACTTGTAGTATTGAGTGTTGCTATTCAAACGAGGAAACTGTATGTCTTGCCACCGAGATTTTCAACAAAGATAAGGTTCATGGGAAGGGGTTTGGTGACTACGACTTGCTTGATAACAACTGTGAAAACTTTACCAGTTATTGCAAAACAGGCAAGAGCGTGAGCGAGCAGGCTCTCAAGGCAATGAGTATTGCATCTGCATCCTCTAGAACCGATACTCCATCCTCATATACTTCCAAGACTACCATGGTTCTTTCTCTTTTTTCTTCCAAGTCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

162

Amino Acids

18.09

Weight (kDa)

8.61

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 40
AclWI GGATC 1 cut(s) 119
AgsI TTSAA 4 cut(s) 15, 105, 231, 268
AjnI CCWGG 1 cut(s) 43
AloI GAACNNNNNNTCC 2 cut(s) 406, 438
AluBI AGCT 2 cut(s) 37, 141
AluI AGCT 2 cut(s) 37, 141
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 311
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 2 cut(s) 147, 411
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 407, 413
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 43, 450
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 43, 450
BseGI GGATG 2 cut(s) 404, 425
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 49, 124
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 1 cut(s) 40
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 43, 450
BssMI GATC 2 cut(s) 49, 124
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 244, 326
BstC8I GCNNGC 4 cut(s) 74, 173, 371, 375
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 404, 425
BstKTI GATC 2 cut(s) 52, 127
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 49, 124
BstMWI GCNNNNNNNGC 2 cut(s) 354, 383
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 404, 425
Cac8I GCNNGC 4 cut(s) 74, 173, 371, 375
CseI GACGC 1 cut(s) 78
CviAII CATG 5 cut(s) 92, 159, 176, 284, 451
CviJI RGCY 3 cut(s) 37, 141, 377
CviKI_1 RGCY 3 cut(s) 37, 141, 377
DpnI GATC 2 cut(s) 51, 126
DpnII GATC 2 cut(s) 49, 124
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 5 cut(s) 95, 162, 179, 287, 454
FatI CATG 5 cut(s) 91, 158, 175, 283, 450
FokI GGATG 2 cut(s) 391, 412
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 2 cut(s) 147, 411
HgaI GACGC 1 cut(s) 78
Hin1II CATG 5 cut(s) 95, 162, 179, 287, 454
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 311
Hpy188III TCNNGA 2 cut(s) 147, 411
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 244, 326
HpyCH4V TGCA 5 cut(s) 116, 171, 348, 398, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 383
Hsp92II CATG 5 cut(s) 95, 162, 179, 287, 454
Kzo9I GATC 2 cut(s) 49, 124
LmnI GCTCC 2 cut(s) 34, 42
LpnPI CCDG 8 cut(s) 4, 30, 57, 58, 157, 339, 352, 359
LweI GCATC 2 cut(s) 407, 413
MaeI CTAG 2 cut(s) 147, 411
MaeIII GTNAC 1 cut(s) 299
MalI GATC 2 cut(s) 51, 126
MboI GATC 2 cut(s) 49, 124
MboII GAAGA 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 39
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 4 cut(s) 25, 229, 418, 439
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 1 cut(s) 484
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 354, 383
NcoI CCATGG 1 cut(s) 450
NdeII GATC 2 cut(s) 49, 124
NlaIII CATG 5 cut(s) 95, 162, 179, 287, 454
NmuCI GTSAC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 10
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 484
Sau3AI GATC 2 cut(s) 49, 124
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 39, 143, 282
SfaNI GCATC 2 cut(s) 407, 413
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 147, 411
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 244, 326
TaqI TCGA 1 cut(s) 188
Tru1I TTAA 1 cut(s) 484
Tru9I TTAA 1 cut(s) 484
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 89, 272
XbaI TCTAGA 2 cut(s) 146, 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 2 cut(s) 147, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.