Rh1BG425100

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002037
Physical Location & Seq
Forward (+)
54361101 .. 54361767
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG425100.1

Sequence Viewer

Length: 573 bp
ATGGAGCATATTACAAACAAGATCGATAGAGAGAGCCTCAAGCCTGGAGATCACATCTATGCTTACAGAAAATTGCACTCCTACTCTCACCATGGTATCTTCATTGGGGGAGATCAAGTGATTCACTATAACAAAACAAAAGAAGGATACACATCGAAACTAGTCAAGCAGTACTGCAAAAACTGCGGGATAGACGAAAACCCCCTTCGAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAAACGCCACACCCTCCGCCGCTTCCAATACGCCGTGGATAAAGGCCGCTACCTCCTCAGCTGGCCAGGCACATGCACTACTGATCCTGCTGAACAGCCAGAAGTGACCATCAGCCGAGCCAATGACTTGTTTAACAAAAAAGATGGGTTCGGGGACTACAACTTGTTTGAGAACAACTGCGAGGCATTCGCGGTTTTCTGCAGGACGGGGAATCGTGTGAGCCACCAGGCGTGCTCAGCCAAGTTTTGGACCAAGCGTTCTTCTTCGCGATGTGTCGGTTCATGTTCATCACGGCGAGGACAAGTACAACAAGTTGAGGCAGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

190

Amino Acids

21.74

Weight (kDa)

8.98

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 153 3.4e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 489
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 434, 511
AciI CCGC 5 cut(s) 186, 259, 262, 289, 434
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 305
AfaI GTAC 2 cut(s) 173, 549
AfiI CCNNNNNNNGG 2 cut(s) 209, 489
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 3 cut(s) 43, 307, 468
AloI GAACNNNNNNTCC 2 cut(s) 484, 516
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw21I GWGCWC 1 cut(s) 479
AlwI GGATC 1 cut(s) 320
AoxI GGCC 2 cut(s) 286, 305
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 359, 380
BceAI ACGGC 2 cut(s) 260, 551
BciT130I CCWGG 3 cut(s) 45, 309, 470
BciVI GTATCC 1 cut(s) 140
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 2 cut(s) 262, 289
BlpI GCTNAGC 1 cut(s) 478
BlsI GCNGC 2 cut(s) 263, 290
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 3 cut(s) 45, 309, 470
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmrFI CCNGG 3 cut(s) 45, 309, 470
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 91, 276
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 489
Bse8I GATNNNNATC 1 cut(s) 151
BseBI CCWGG 3 cut(s) 45, 309, 470
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 91, 276
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 209, 489
BseMII CTCAG 2 cut(s) 313, 492
BseRI GAGGAG 2 cut(s) 225, 287
Bsh1236I CGCG 2 cut(s) 434, 511
BshFI GGCC 2 cut(s) 288, 307
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 479
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 209, 489
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 2 cut(s) 288, 307
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 4 cut(s) 21, 49, 112, 325
Bsp1720I GCTNAGC 1 cut(s) 478
Bsp19I CCATGG 1 cut(s) 91
Bsp68I TCGCGA 1 cut(s) 511
BspACI CCGC 5 cut(s) 186, 259, 262, 289, 434
BspANI GGCC 2 cut(s) 288, 307
BspCNI CTCAG 2 cut(s) 312, 491
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 2 cut(s) 434, 511
BspMAI CTGCAG 1 cut(s) 446
BspPI GGATC 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 91, 276
BssMI GATC 4 cut(s) 21, 49, 112, 325
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 3 cut(s) 45, 309, 470
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 305, 475
BstDEI CTNAG 2 cut(s) 299, 478
BstDSI CCRYGG 2 cut(s) 91, 276
BstFNI CGCG 2 cut(s) 434, 511
BstKTI GATC 4 cut(s) 24, 52, 115, 328
BstMBI GATC 4 cut(s) 21, 49, 112, 325
BstMWI GCNNNNNNNGC 4 cut(s) 183, 234, 309, 479
BstNI CCWGG 3 cut(s) 45, 309, 470
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 3 cut(s) 43, 307, 468
BstSFI CTRYAG 1 cut(s) 442
BstUI CGCG 2 cut(s) 434, 511
Bsu15I ATCGAT 1 cut(s) 24
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 288, 307
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 91, 276
BtgZI GCGATG 1 cut(s) 526
BtuMI TCGCGA 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 305, 475
Cfr13I GGNCC 1 cut(s) 492
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 172, 548
CviAII CATG 3 cut(s) 92, 315, 525
CviQI GTAC 2 cut(s) 172, 548
DdeI CTNAG 2 cut(s) 299, 478
DpnI GATC 4 cut(s) 23, 51, 114, 327
DpnII GATC 4 cut(s) 21, 49, 112, 325
EaeI YGGCCR 1 cut(s) 305
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 492
EcoRII CCWGG 3 cut(s) 43, 307, 468
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 95, 318, 528
FaiI YATR 6 cut(s) 9, 60, 93, 129, 316, 526
FaqI GGGAC 1 cut(s) 410
FatI CATG 3 cut(s) 91, 314, 524
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 262, 289
Fsp4HI GCNGC 2 cut(s) 262, 289
FspBI CTAG 1 cut(s) 161
GluI GCNGC 2 cut(s) 262, 289
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 288, 307
HgaI GACGC 1 cut(s) 217
Hin1II CATG 3 cut(s) 95, 318, 528
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 121, 213, 454
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 137, 215
HpyCH4V TGCA 4 cut(s) 76, 177, 318, 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 234, 309, 479
HpyF3I CTNAG 2 cut(s) 299, 478
Hsp92II CATG 3 cut(s) 95, 318, 528
Kzo9I GATC 4 cut(s) 21, 49, 112, 325
LmnI GCTCC 1 cut(s) 4
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 346
MalI GATC 4 cut(s) 23, 51, 114, 327
MboI GATC 4 cut(s) 21, 49, 112, 325
MboII GAAGA 3 cut(s) 91, 495, 498
MhlI GDGCHC 1 cut(s) 479
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 307
MlyI GAGTC 1 cut(s) 222
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 3 cut(s) 45, 309, 470
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 3 cut(s) 45, 309, 470
MvnI CGCG 2 cut(s) 434, 511
MwoI GCNNNNNNNGC 4 cut(s) 183, 234, 309, 479
NcoI CCATGG 1 cut(s) 91
NdeII GATC 4 cut(s) 21, 49, 112, 325
NlaIII CATG 3 cut(s) 95, 318, 528
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 346
NruI TCGCGA 1 cut(s) 511
NspI RCATGY 1 cut(s) 318
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 121, 454
PflMI CCANNNNNTGG 1 cut(s) 489
PkrI GCNGC 2 cut(s) 263, 290
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 3 cut(s) 43, 307, 468
PspGI CCWGG 3 cut(s) 43, 307, 468
PspPI GGNCC 1 cut(s) 492
PstI CTGCAG 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 303
RruI TCGCGA 1 cut(s) 511
RsaI GTAC 2 cut(s) 173, 549
RsaNI GTAC 2 cut(s) 172, 548
RseI CAYNNNNRTG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 262, 289
Sau3AI GATC 4 cut(s) 21, 49, 112, 325
Sau96I GGNCC 1 cut(s) 492
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 3 cut(s) 45, 309, 470
SduI GDGCHC 1 cut(s) 479
SetI ASST 2 cut(s) 297, 305
SfcI CTRYAG 1 cut(s) 442
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 1 cut(s) 71
SsiI CCGC 5 cut(s) 186, 259, 262, 289, 434
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 43, 307, 468
StyI CCWWGG 1 cut(s) 91
TaqI TCGA 4 cut(s) 24, 155, 208, 231
TasI AATT 1 cut(s) 71
TatI WGTACW 2 cut(s) 171, 547
TauI GCSGC 2 cut(s) 264, 291
TfiI GAWTC 2 cut(s) 121, 454
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 91, 513, 519
Van91I CCANNNNNTGG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 492
XceI RCATGY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.