RchiOBHm_Chr1g0383731

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002037
Physical Location & Seq
Forward (+)
67948047 .. 67950579
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60661

Sequence Viewer

Length: 675 bp
ATGCTTACAGAAAAGGTTACTTTTACACCCACCATGGTTAGTACTGGTATCTTCGTTGGGAACGATACAGTGATTCACTTTAACAGAACACAAGAACGAGACGCATCGAGAGGAGGTAGGCCATGCAGAAAGTGCGGGGTTGACAAAGATCACCTCCGAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAATGGCCGCCACCTCCACCGCTTCCGATACAGTGTTGGTCCCATCCGCTTCGTTACCAACGTTGTAGGCACCTGCACCACCGGCAATGCTGACCCGCCAGATGTGACCATCAGCCGCGCCAATGGCCTGTTTGACAGGCAAGATTTTGGGGACTATGACTTGGCTCTGAACAACTGCGAGACCTTTGCGGTGTTCTGCAAGACGGGGGTCCGCAGCAGCGACCAGGCTCGCTCGGCTCTATCGCTGATTGATGCGGCGCTTGAGAGGCTTTATAATGATGTGTTGGTTCATCACGGCCAGGAAAAGCTCAACGAGTTAATGCAGGTGATTACCAGGTTTCTTGGTGATGAGCCGAGTCAACAGGGCGTGGGGAAGCTCAACAAGTTCAAGCAGAAGATTGATTGGTATCGCGCTAATAGGTGGTCGCCTGACCAGATCAGTGACGGTTTAAGAAATCTTGAAATTGATCAGGGGGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

224

Amino Acids

25.21

Weight (kDa)

7.63

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 16 - 134 6e-15 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AarI CACCTGC 2 cut(s) 272, 505
Acc36I ACCTGC 2 cut(s) 272, 505
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 309, 603
AciI CCGC 9 cut(s) 135, 199, 211, 238, 287, 307, 380, 403, 446
AclI AACGTT 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 196, 487
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 2 cut(s) 580, 653
AjnI CCWGG 3 cut(s) 414, 489, 524
AluBI AGCT 2 cut(s) 499, 568
AluI AGCT 2 cut(s) 499, 568
Alw26I GTCTC 2 cut(s) 93, 365
AoxI GGCC 4 cut(s) 119, 196, 316, 487
ApeKI GCWGC 2 cut(s) 405, 408
AspLEI GCGC 3 cut(s) 311, 451, 605
AspS9I GGNCC 2 cut(s) 230, 400
AsuHPI GGTGA 3 cut(s) 143, 529, 548
AvaII GGWCC 2 cut(s) 230, 400
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 417, 420
BccI CCATC 2 cut(s) 242, 308
BceAI ACGGC 1 cut(s) 502
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 3 cut(s) 416, 491, 526
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 93, 365
BfoI RGCGCY 1 cut(s) 452
BfuAI ACCTGC 2 cut(s) 272, 505
BisI GCNGC 5 cut(s) 199, 307, 406, 409, 447
BlsI GCNGC 5 cut(s) 200, 308, 407, 410, 448
BmcAI AGTACT 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 416, 491, 526
Bme18I GGWCC 2 cut(s) 230, 400
BmgT120I GGNCC 2 cut(s) 230, 400
BmiI GGNNCC 3 cut(s) 232, 262, 401
BmrFI CCNGG 3 cut(s) 416, 491, 526
BmsI GCATC 2 cut(s) 113, 433
BoxI GACNNNNGTC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 33, 157
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 3 cut(s) 416, 491, 526
BseDI CCNNGG 2 cut(s) 33, 157
BseGI GGATG 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 597
BseMI GCAATG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 126, 174
BseXI GCAGC 2 cut(s) 417, 420
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 2 cut(s) 309, 603
BshFI GGCC 4 cut(s) 121, 198, 318, 489
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 216, 356
BsmAI GTCTC 2 cut(s) 93, 365
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 216, 356
BsnI GGCC 4 cut(s) 121, 198, 318, 489
Bso31I GGTCTC 1 cut(s) 365
Bsp143I GATC 4 cut(s) 148, 627, 658, 667
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 9 cut(s) 135, 199, 211, 238, 287, 307, 380, 403, 446
BspANI GGCC 4 cut(s) 121, 198, 318, 489
BspFNI CGCG 2 cut(s) 309, 603
BspLI GGNNCC 3 cut(s) 232, 262, 401
BspMI ACCTGC 2 cut(s) 272, 505
BspT107I GGYRCC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 33, 157
BssMI GATC 4 cut(s) 148, 627, 658, 667
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 3 cut(s) 416, 491, 526
Bst4CI ACNGT 3 cut(s) 70, 224, 638
BstAPI GCANNNNNTGC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 421
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 2 cut(s) 309, 603
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 3 cut(s) 311, 451, 605
BstKTI GATC 4 cut(s) 151, 630, 661, 670
BstMAI GTCTC 2 cut(s) 93, 365
BstMBI GATC 4 cut(s) 148, 627, 658, 667
BstMWI GCNNNNNNNGC 6 cut(s) 132, 183, 273, 315, 425, 457
BstNI CCWGG 3 cut(s) 416, 491, 526
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 414, 489, 524
BstUI CGCG 2 cut(s) 309, 603
BstV1I GCAGC 2 cut(s) 417, 420
BsuRI GGCC 4 cut(s) 121, 198, 318, 489
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 75, 229, 637
BveI ACCTGC 2 cut(s) 272, 505
Cac8I GCNNGC 1 cut(s) 421
CfoI GCGC 3 cut(s) 311, 451, 605
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 230, 400
CseI GACGC 2 cut(s) 110, 166
CsiI ACCWGGT 1 cut(s) 524
Csp6I GTAC 1 cut(s) 42
CviAII CATG 2 cut(s) 34, 123
CviQI GTAC 1 cut(s) 42
DpnI GATC 4 cut(s) 150, 629, 660, 669
DpnII GATC 4 cut(s) 148, 627, 658, 667
EaeI YGGCCR 2 cut(s) 196, 487
Eco130I CCWWGG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 2 cut(s) 230, 400
EcoRII CCWGG 3 cut(s) 414, 489, 524
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 2 cut(s) 37, 126
FaiI YATR 4 cut(s) 35, 124, 348, 465
FaqI GGGAC 2 cut(s) 216, 356
FatI CATG 2 cut(s) 33, 122
FauI CCCGC 2 cut(s) 128, 294
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 5 cut(s) 199, 307, 406, 409, 447
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 5 cut(s) 199, 307, 406, 409, 447
GlaI GCGC 3 cut(s) 310, 450, 604
GluI GCNGC 5 cut(s) 199, 307, 406, 409, 447
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 4 cut(s) 121, 198, 318, 489
HapII CCGG 1 cut(s) 273
HgaI GACGC 2 cut(s) 110, 166
HhaI GCGC 3 cut(s) 311, 451, 605
Hin1II CATG 2 cut(s) 37, 126
Hin6I GCGC 3 cut(s) 309, 449, 603
HinP1I GCGC 3 cut(s) 309, 449, 603
HincII GTYRAC 3 cut(s) 142, 181, 551
HindII GTYRAC 3 cut(s) 142, 181, 551
HinfI GANTC 3 cut(s) 73, 162, 547
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 143, 529, 548
Hpy166II GTNNAC 3 cut(s) 142, 181, 551
Hpy188I TCNGA 3 cut(s) 158, 218, 360
Hpy188III TCNNGA 2 cut(s) 108, 650
Hpy8I GTNNAC 3 cut(s) 142, 181, 551
Hpy99I CGWCG 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 70, 224, 638
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 126, 267, 390, 514
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 183, 273, 315, 425, 457
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 2 cut(s) 37, 126
HspAI GCGC 3 cut(s) 309, 449, 603
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 148, 627, 658, 667
Lsp1109I GCAGC 2 cut(s) 417, 420
LweI GCATC 2 cut(s) 113, 433
MabI ACCWGGT 1 cut(s) 524
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 4 cut(s) 16, 244, 295, 632
MalI GATC 4 cut(s) 150, 629, 660, 669
MboI GATC 4 cut(s) 148, 627, 658, 667
MboII GAAGA 2 cut(s) 43, 598
MluCI AATT 1 cut(s) 654
MlyI GAGTC 2 cut(s) 171, 556
MnlI CCTC 7 cut(s) 104, 107, 152, 164, 200, 215, 450
MseI TTAA 4 cut(s) 81, 509, 641, 673
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 3 cut(s) 416, 491, 526
MvaI CCWGG 3 cut(s) 416, 491, 526
MvnI CGCG 2 cut(s) 309, 603
MwoI GCNNNNNNNGC 6 cut(s) 132, 183, 273, 315, 425, 457
NcoI CCATGG 1 cut(s) 33
NdeII GATC 4 cut(s) 148, 627, 658, 667
NlaIII CATG 2 cut(s) 37, 126
NlaIV GGNNCC 3 cut(s) 232, 262, 401
NmeAIII GCCGAG 2 cut(s) 404, 570
NmuCI GTSAC 2 cut(s) 295, 632
PaqCI CACCTGC 2 cut(s) 272, 505
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 249
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 5 cut(s) 200, 308, 407, 410, 448
PleI GAGTC 2 cut(s) 170, 555
PpsI GAGTC 2 cut(s) 170, 555
PshAI GACNNNNGTC 1 cut(s) 398
PsiI TTATAA 1 cut(s) 465
Psp1406I AACGTT 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 414, 489, 524
PspGI CCWGG 3 cut(s) 414, 489, 524
PspN4I GGNNCC 3 cut(s) 232, 262, 401
PspPI GGNCC 2 cut(s) 230, 400
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 81, 509, 641, 673
SatI GCNGC 5 cut(s) 199, 307, 406, 409, 447
Sau3AI GATC 4 cut(s) 148, 627, 658, 667
Sau96I GGNCC 2 cut(s) 230, 400
ScaI AGTACT 1 cut(s) 43
SchI GAGTC 2 cut(s) 171, 556
ScrFI CCNGG 3 cut(s) 416, 491, 526
SexAI ACCWGGT 1 cut(s) 524
SfaNI GCATC 2 cut(s) 113, 433
SinI GGWCC 2 cut(s) 230, 400
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 1 cut(s) 654
SsiI CCGC 9 cut(s) 135, 199, 211, 238, 287, 307, 380, 403, 446
StyD4I CCNGG 3 cut(s) 414, 489, 524
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 70, 224, 638
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 107, 180
TasI AATT 1 cut(s) 654
TatI WGTACW 1 cut(s) 41
TauI GCSGC 3 cut(s) 201, 309, 449
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 4 cut(s) 81, 509, 641, 673
Tru9I TTAA 4 cut(s) 81, 509, 641, 673
TscAI CASTG 3 cut(s) 75, 229, 637
TseFI GTSAC 2 cut(s) 295, 632
TseI GCWGC 2 cut(s) 405, 408
Tsp45I GTSAC 2 cut(s) 295, 632
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 3 cut(s) 75, 229, 637
VpaK11BI GGWCC 2 cut(s) 230, 400
XmiI GTMKAC 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.