Rh1CG437800

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002037
Physical Location & Seq
Forward (+)
69236256 .. 69237027
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG437800.1

Sequence Viewer

Length: 684 bp
ATGGAGCATATTACAAACAAGATCGATAGAGAGAGCCTCAAGCCTGGAGATCACATCTATGCTTACAGAAAATTGCACTCCTACTCTCACCATGGTATCTTCATTGGGGGAGATAGAGTGATTCACTATAACAAAACACAGGAAGGAAACACATCGAAACGAGTCAAGCAGTGCAAAAACTGCGGGGTTGACAAAAACCACTTCCAAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAAAGGCCACACTCTCCGCTGCTTCCAATACGAAGTCGGTTACGGCCGCTACCTCACCAACCTGCCAGGCACATGCACCACTGGTCGTGCTCACCCGCCAGAAGTGACCATCAGCCGCGCCAATGACCTGTTTAACAAGAAAGATGGGTTTGGGGACTATAACTTGTTTGAGAACAACTGCGAGGCGTTTGCGGTGTTCTGCAAGACGGAGAAGCGCGTGAGCGACCAGTCGTCCTCGGCTATATTGCTGATCAAGGCTAGTGTGAAGGTGGCGATGGATAGGCTTCTTCGTGATGTGTCGGTTCATCACGGCGAGGAGAAGCACAACAAGTTGAAGCAGAGGATTGATAGCTGGCTCGCTAATATGTCGTCGCTTAAACAGATCATTGACAATCTTGAAAAGGATCAGGAGGGTCATCAACTTATGATCACCGGCGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

227

Amino Acids

25.8

Weight (kDa)

8.94

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 152 1.6e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 357, 456
AciI CCGC 6 cut(s) 183, 256, 286, 335, 355, 431
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 1 cut(s) 283
AgsI TTSAA 2 cut(s) 574, 638
AhdI GACNNNNNGTC 1 cut(s) 469
AjnI CCWGG 2 cut(s) 43, 304
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
Alw21I GWGCWC 1 cut(s) 331
AlwI GGATC 1 cut(s) 651
AoxI GGCC 2 cut(s) 244, 283
ApeKI GCWGC 1 cut(s) 258
AspLEI GCGC 3 cut(s) 359, 456, 677
AsuHPI GGTGA 4 cut(s) 80, 286, 323, 661
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 356, 377, 508
BceAI ACGGC 2 cut(s) 298, 565
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 2 cut(s) 45, 306
BclI TGATCA 2 cut(s) 489, 666
BfaI CTAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 3 cut(s) 259, 286, 355
BlsI GCNGC 3 cut(s) 260, 287, 356
Bme1390I CCNGG 2 cut(s) 45, 306
BmeRI GACNNNNNGTC 1 cut(s) 469
BmrFI CCNGG 2 cut(s) 45, 306
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 91, 205, 474
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 325, 466
BseBI CCWGG 2 cut(s) 45, 306
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 91, 205, 474
BseNI ACTGG 2 cut(s) 325, 466
BseRI GAGGAG 1 cut(s) 569
BseX3I CGGCCG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 357, 456
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 246, 285
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 672
BslFI GGGAC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 2 cut(s) 246, 285
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 6 cut(s) 21, 49, 489, 621, 643, 666
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 6 cut(s) 183, 256, 286, 335, 355, 431
BspANI GGCC 2 cut(s) 246, 285
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 2 cut(s) 357, 456
BspHI TCATGA 1 cut(s) 680
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 2 cut(s) 325, 466
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 3 cut(s) 91, 205, 474
BssMI GATC 6 cut(s) 21, 49, 489, 621, 643, 666
BssT1I CCWWGG 2 cut(s) 91, 205
Bst2UI CCWGG 2 cut(s) 45, 306
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 593, 597
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 2 cut(s) 357, 456
BstHHI GCGC 3 cut(s) 359, 456, 677
BstKTI GATC 6 cut(s) 24, 52, 492, 624, 646, 669
BstMBI GATC 6 cut(s) 21, 49, 489, 621, 643, 666
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 180, 231
BstNI CCWGG 2 cut(s) 45, 306
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 2 cut(s) 43, 304
BstUI CGCG 2 cut(s) 357, 456
BstV1I GCAGC 1 cut(s) 245
BstZI CGGCCG 1 cut(s) 283
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 246, 285
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 527
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 176, 318
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 593, 597
CciI TCATGA 1 cut(s) 680
CfoI GCGC 3 cut(s) 359, 456, 677
Cfr10I RCCGGY 1 cut(s) 671
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 214
CviAII CATG 3 cut(s) 92, 312, 681
DpnI GATC 6 cut(s) 23, 51, 491, 623, 645, 668
DpnII GATC 6 cut(s) 21, 49, 489, 621, 643, 666
DriI GACNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 283
EagI CGGCCG 1 cut(s) 283
Eam1105I GACNNNNNGTC 1 cut(s) 469
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 91, 205
Eco52I CGGCCG 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 43, 304
EcoT14I CCWWGG 2 cut(s) 91, 205
ErhI CCWWGG 2 cut(s) 91, 205
FaeI CATG 3 cut(s) 95, 315, 684
FaqI GGGAC 1 cut(s) 407
FatI CATG 3 cut(s) 91, 311, 680
FauI CCCGC 2 cut(s) 176, 342
FbaI TGATCA 2 cut(s) 489, 666
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 259, 286, 355
Fsp4HI GCNGC 3 cut(s) 259, 286, 355
FspBI CTAG 1 cut(s) 498
GlaI GCGC 3 cut(s) 358, 455, 676
GluI GCNGC 3 cut(s) 259, 286, 355
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 246, 285
HapII CCGG 1 cut(s) 672
HgaI GACGC 1 cut(s) 214
HhaI GCGC 3 cut(s) 359, 456, 677
Hin1II CATG 3 cut(s) 95, 315, 684
Hin6I GCGC 3 cut(s) 357, 454, 675
HinP1I GCGC 3 cut(s) 357, 454, 675
HincII GTYRAC 2 cut(s) 190, 229
HindII GTYRAC 2 cut(s) 190, 229
HinfI GANTC 3 cut(s) 121, 162, 210
HpaII CCGG 1 cut(s) 672
HphI GGTGA 4 cut(s) 80, 286, 323, 661
Hpy166II GTNNAC 2 cut(s) 190, 229
Hpy188III TCNNGA 4 cut(s) 530, 635, 647, 681
Hpy8I GTNNAC 2 cut(s) 190, 229
Hpy99I CGWCG 2 cut(s) 230, 613
HpyAV CCTTC 2 cut(s) 137, 499
HpyCH4V TGCA 4 cut(s) 76, 174, 315, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 231
Hsp92II CATG 3 cut(s) 95, 315, 684
HspAI GCGC 3 cut(s) 357, 454, 675
Ksp22I TGATCA 2 cut(s) 489, 666
Kzo9I GATC 6 cut(s) 21, 49, 489, 621, 643, 666
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 278, 343
MalI GATC 6 cut(s) 23, 51, 491, 623, 645, 668
MboI GATC 6 cut(s) 21, 49, 489, 621, 643, 666
MboII GAAGA 2 cut(s) 91, 518
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 71
MlyI GAGTC 2 cut(s) 171, 219
MnlI CCTC 8 cut(s) 47, 248, 302, 415, 484, 547, 573, 643
MseI TTAA 2 cut(s) 372, 615
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 2 cut(s) 45, 306
MvaI CCWGG 2 cut(s) 45, 306
MvnI CGCG 2 cut(s) 357, 456
MwoI GCNNNNNNNGC 2 cut(s) 180, 231
NcoI CCATGG 1 cut(s) 91
NdeII GATC 6 cut(s) 21, 49, 489, 621, 643, 666
NlaIII CATG 3 cut(s) 95, 315, 684
NmeAIII GCCGAG 1 cut(s) 455
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 315
PagI TCATGA 1 cut(s) 680
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 260, 287, 356
PleI GAGTC 2 cut(s) 170, 218
PpsI GAGTC 2 cut(s) 170, 218
Psp6I CCWGG 2 cut(s) 43, 304
PspGI CCWGG 2 cut(s) 43, 304
RseI CAYNNNNRTG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 372, 615
SatI GCNGC 3 cut(s) 259, 286, 355
Sau3AI GATC 6 cut(s) 21, 49, 489, 621, 643, 666
SchI GAGTC 2 cut(s) 171, 219
ScrFI CCNGG 2 cut(s) 45, 306
SduI GDGCHC 1 cut(s) 331
SetI ASST 5 cut(s) 294, 303, 369, 510, 593
SgrAI CRCCGGYG 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 71
SsiI CCGC 6 cut(s) 183, 256, 286, 335, 355, 431
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 43, 304
StyI CCWWGG 2 cut(s) 91, 205
TaqI TCGA 3 cut(s) 24, 155, 228
TasI AATT 1 cut(s) 71
TauI GCSGC 2 cut(s) 288, 357
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 372, 615
Tru9I TTAA 2 cut(s) 372, 615
TscAI CASTG 2 cut(s) 176, 325
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 91, 533
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 176, 325
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.