FvH4_7g33520

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002037
Physical Location & Seq
Forward (+)
23824467 .. 23828950
4484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33520.t4

Sequence Viewer

Length: 699 bp
ATGGAGGATATTGTACACAACAAGATCGATAGAGAGAGCCTCAAACCTGGAGATCACATCTATGCTTACAGACTTGCGCACACCTATTCCCACCATGGTATCTACATTGGGGGAGATAGAGTGATTCACTATAACAGAACTCAACAAGCAAACAGATGGAATCGAGCGGAGCCATGCAGGAAGTGCGAGCTTGACAGAAATCACCTCCGAGGAGTTGTCAAGTCTTGCGTCGACTGCTTTCTCCAAGGCCACGCTCTTCGCCGCTTCCAATACGGCGTTAAGGTCGTGCGCTACCTCGCCAGCTGGCACGGCACCTGCACCACGGGCCGTGCTGACCCACCAGAAGTCGCCATCCGCCGTGCCAATGATCACTTAGACGGTCATGGGTTCGGGGACTACGACTTGTTTGAGAACAACTGCGAGGCGTTTGCGGTGTTCTGCAAGACGGAGAAGGCCGTGAGCAGCCAGGCGTGGGCTGCCATGTTGATGTTGAAGGCCGGTGTGAAGATAGGGAGGGACAGACTTCTTCATGATGTGAAGGTTCACTATGGCCAGGAAAAGCACGACAAGTTGAAGCAGATGATTGATAGCGCGCTCACTGGTATCTCCTCGCTTAAAGAGTTGATTGCCAATCTTCAGAAGGATCAGGCCGCGGATTCAGTCGAGGAGGTCATGGGATCACCGGTGCATGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

233

Amino Acids

26.38

Weight (kDa)

8.14

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 152 4.7e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc16I TGCGCA 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 593, 653
AciI CCGC 6 cut(s) 167, 262, 355, 431, 651, 653
AclWI GGATC 2 cut(s) 651, 685
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 472
AgeI ACCGGT 1 cut(s) 682
AgsI TTSAA 2 cut(s) 493, 574
AjnI CCWGG 3 cut(s) 46, 465, 552
AluBI AGCT 2 cut(s) 190, 303
AluI AGCT 2 cut(s) 190, 303
AlwI GGATC 2 cut(s) 651, 685
AoxI GGCC 6 cut(s) 247, 325, 453, 495, 550, 648
ApeKI GCWGC 2 cut(s) 462, 476
AsiGI ACCGGT 1 cut(s) 682
AspLEI GCGC 4 cut(s) 79, 291, 593, 595
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 194, 672
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 463, 474
BccI CCATC 2 cut(s) 150, 359
BceAI ACGGC 5 cut(s) 289, 312, 325, 342, 440
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 48, 467, 554
BclI TGATCA 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 4 cut(s) 262, 463, 477, 651
BlsI GCNGC 4 cut(s) 263, 464, 478, 652
Bme1390I CCNGG 3 cut(s) 48, 467, 554
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 171, 313
BmrFI CCNGG 3 cut(s) 48, 467, 554
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpmI CTGGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 27
BsaJI CCNNGG 5 cut(s) 94, 208, 244, 321, 651
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 2 cut(s) 497, 682
Bse1I ACTGG 1 cut(s) 604
BseBI CCWGG 3 cut(s) 48, 467, 554
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 5 cut(s) 94, 208, 244, 321, 651
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 472
BseNI ACTGG 1 cut(s) 604
BsePI GCGCGC 1 cut(s) 591
BseRI GAGGAG 3 cut(s) 225, 598, 680
BseXI GCAGC 2 cut(s) 463, 474
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 2 cut(s) 593, 653
BshFI GGCC 6 cut(s) 249, 327, 455, 497, 552, 650
BshNI GGYRCC 1 cut(s) 311
BshTI ACCGGT 1 cut(s) 682
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 2 cut(s) 498, 683
BslFI GGGAC 2 cut(s) 407, 530
BslI CCNNNNNNNGG 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 407, 530
BsnI GGCC 6 cut(s) 249, 327, 455, 497, 552, 650
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 5 cut(s) 24, 52, 367, 643, 677
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 6 cut(s) 167, 262, 355, 431, 651, 653
BspANI GGCC 6 cut(s) 249, 327, 455, 497, 552, 650
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 2 cut(s) 593, 653
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 171, 313
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 2 cut(s) 651, 685
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 167
BsrFI RCCGGY 2 cut(s) 497, 682
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 604
BssAI RCCGGY 2 cut(s) 497, 682
BssECI CCNNGG 5 cut(s) 94, 208, 244, 321, 651
BssHII GCGCGC 1 cut(s) 591
BssMI GATC 5 cut(s) 24, 52, 367, 643, 677
BssT1I CCWWGG 2 cut(s) 94, 244
Bst2UI CCWGG 3 cut(s) 48, 467, 554
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 4 cut(s) 188, 301, 305, 593
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 3 cut(s) 94, 321, 651
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 2 cut(s) 593, 653
BstHHI GCGC 4 cut(s) 79, 291, 593, 595
BstKTI GATC 5 cut(s) 27, 55, 370, 646, 680
BstMBI GATC 5 cut(s) 24, 52, 367, 643, 677
BstMWI GCNNNNNNNGC 5 cut(s) 183, 234, 309, 324, 476
BstNI CCWGG 3 cut(s) 48, 467, 554
BstSCI CCNGG 3 cut(s) 46, 465, 552
BstUI CGCG 2 cut(s) 593, 653
BstV1I GCAGC 2 cut(s) 463, 474
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 6 cut(s) 249, 327, 455, 497, 552, 650
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 3 cut(s) 94, 321, 651
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 597
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 4 cut(s) 188, 301, 305, 593
CciI TCATGA 1 cut(s) 529
CfoI GCGC 4 cut(s) 79, 291, 593, 595
Cfr10I RCCGGY 2 cut(s) 497, 682
Cfr13I GGNCC 1 cut(s) 325
Cfr42I CCGCGG 1 cut(s) 654
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 14
CspAI ACCGGT 1 cut(s) 682
CviAII CATG 7 cut(s) 95, 174, 383, 481, 530, 673, 689
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 373
DpnI GATC 5 cut(s) 26, 54, 369, 645, 679
DpnII GATC 5 cut(s) 24, 52, 367, 643, 677
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 94, 244
Eco57I CTGAAG 1 cut(s) 620
EcoRII CCWGG 3 cut(s) 46, 465, 552
EcoT14I CCWWGG 2 cut(s) 94, 244
ErhI CCWWGG 2 cut(s) 94, 244
FaeI CATG 7 cut(s) 98, 177, 386, 484, 533, 676, 692
FaqI GGGAC 2 cut(s) 407, 530
FatI CATG 7 cut(s) 94, 173, 382, 480, 529, 672, 688
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 262, 463, 477, 651
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 262, 463, 477, 651
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 4 cut(s) 78, 290, 592, 594
GluI GCNGC 4 cut(s) 262, 463, 477, 651
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 6 cut(s) 249, 327, 455, 497, 552, 650
HapII CCGG 2 cut(s) 498, 683
HgaI GACGC 1 cut(s) 217
HhaI GCGC 4 cut(s) 79, 291, 593, 595
Hin1II CATG 7 cut(s) 98, 177, 386, 484, 533, 676, 692
Hin6I GCGC 4 cut(s) 77, 289, 591, 593
HinP1I GCGC 4 cut(s) 77, 289, 591, 593
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 124, 160, 656
HpaII CCGG 2 cut(s) 498, 683
HphI GGTGA 2 cut(s) 194, 672
Hpy166II GTNNAC 3 cut(s) 16, 232, 544
Hpy188I TCNGA 2 cut(s) 209, 639
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 3 cut(s) 16, 232, 544
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 445, 487, 532, 634
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 4 cut(s) 177, 318, 441, 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 234, 309, 324, 476
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 7 cut(s) 98, 177, 386, 484, 533, 676, 692
HspAI GCGC 4 cut(s) 77, 289, 591, 593
Ksp22I TGATCA 1 cut(s) 367
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 5 cut(s) 24, 52, 367, 643, 677
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 463, 474
MalI GATC 5 cut(s) 26, 54, 369, 645, 679
MbiI CCGCTC 1 cut(s) 167
MboI GATC 5 cut(s) 24, 52, 367, 643, 677
MboII GAAGA 4 cut(s) 248, 517, 518, 626
MlsI TGGCCA 1 cut(s) 552
MluNI TGGCCA 1 cut(s) 552
MnlI CCTC 9 cut(s) 50, 203, 215, 305, 415, 507, 619, 658, 661
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 2 cut(s) 279, 615
MslI CAYNNNNRTG 2 cut(s) 60, 485
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 303, 653
MspI CCGG 2 cut(s) 498, 683
MspR9I CCNGG 3 cut(s) 48, 467, 554
MvaI CCWGG 3 cut(s) 48, 467, 554
MvnI CGCG 2 cut(s) 593, 653
MwoI GCNNNNNNNGC 5 cut(s) 183, 234, 309, 324, 476
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 24, 52, 367, 643, 677
NlaIII CATG 7 cut(s) 98, 177, 386, 484, 533, 676, 692
NlaIV GGNNCC 2 cut(s) 171, 313
NsbI TGCGCA 1 cut(s) 78
PagI TCATGA 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 323
PauI GCGCGC 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 3 cut(s) 124, 160, 656
PinAI ACCGGT 1 cut(s) 682
PkrI GCNGC 4 cut(s) 263, 464, 478, 652
Psp6I CCWGG 3 cut(s) 46, 465, 552
PspGI CCWGG 3 cut(s) 46, 465, 552
PspN4I GGNNCC 2 cut(s) 171, 313
PspPI GGNCC 1 cut(s) 325
PteI GCGCGC 1 cut(s) 591
PvuII CAGCTG 1 cut(s) 303
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 60, 485
SacII CCGCGG 1 cut(s) 654
SalI GTCGAC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 2 cut(s) 279, 615
SatI GCNGC 4 cut(s) 262, 463, 477, 651
Sau3AI GATC 5 cut(s) 24, 52, 367, 643, 677
Sau96I GGNCC 1 cut(s) 325
ScrFI CCNGG 3 cut(s) 48, 467, 554
Sfr303I CCGCGG 1 cut(s) 654
SgrAI CRCCGGYG 1 cut(s) 682
SgrBI CCGCGG 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 60, 485
SsiI CCGC 6 cut(s) 167, 262, 355, 431, 651, 653
StyD4I CCNGG 3 cut(s) 46, 465, 552
StyI CCWWGG 2 cut(s) 94, 244
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 4 cut(s) 27, 163, 231, 663
TatI WGTACW 1 cut(s) 13
TauI GCSGC 2 cut(s) 264, 653
TfiI GAWTC 3 cut(s) 124, 160, 656
Tru1I TTAA 2 cut(s) 279, 615
Tru9I TTAA 2 cut(s) 279, 615
TscAI CASTG 1 cut(s) 604
TseI GCWGC 2 cut(s) 462, 476
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.