Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276961.1

Orthogroup ID

OG0002037

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 766

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276961.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggagcagattacaaacaagatcgatagaaagagcctcaagcctggagatcacatctatgcttacagaaaattgcacttctactctcaccatggtatcttcattgggggagatagagtgattcactataacaaaacacaggaaggaaacacatcgaaacgagtcaagcagtgcaaaaactgcggggtaaacaaaaaccacttccaaggagtcgtcaagtcctgcgtcgactgcttcctcaaaggccacactctccgctgcttccaatacgcagtcggttacggccgctacctcaccaacctgccaggcacatgcaccactggtcgtgctcaccttccagaagtgaccatcagccgcgccaatgacctgtttaacaatgggtttggggactataacttgtttgagaacaactgcgaggcgtttgcggtgttctgcaagacggagaaacgcgtgagcgaccagtcgtgctcggctaaattgctgatcaaggctactgtgacgatggcgaaggataggcttcttcgtgatgtgttggttcatcacggcgaggagaagcacaacaagttgaagcagaggattgatagctgcctcgctaatatgtcgtcgcttaaacagatcattgccaattttgaaaaggatcaggagggtcatcaactcatgaccaccggcgcatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

225

Amino Acids

25.52

Weight (kDa)

9.27

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002037)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00790 FvH4_7g33470 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520
malus_domestica	MD01G1232800.v1.1 MD07G1305200.v1.1
prunus_persica	Prupe.6G174600_v2.0.a1 Prupe.6G175500_v2.0.a1 Prupe.6G175600_v2.0.a1
pyrus_communis	pycom01g24120 pycom07g24650
rosa_chinensis	RchiOBHm_Chr1g0383441 RchiOBHm_Chr1g0383561 RchiOBHm_Chr1g0383641 RchiOBHm_Chr1g0383731 RchiOBHm_Chr6g0251191
rosa_laevigata	RLG00000015475 RLG00000026100
rosa_multiflora	Rmu_co8276961.1_g000001 Rmu_sc0004077.1_g000010 Rmu_sc0012471.1_g000014 Rmu_sc0012471.1_g000024
rosa_roxburghii	Rroxscaffold_4G00277260 Rroxscaffold_4G00277270 Rroxscaffold_7G00216940
rosa_rugosa	Rorug01G0442000 Rorug05G0500600
rosa_samantha	Rh1AG467500 Rh1AG467700 Rh1BG424700 Rh1BG425100 Rh1CG437800 Rh1CG438000 Rh1DG457500 Rh1DG457900 Rh6AG010000 Rh6BG002000 Rh6CG007100 Rh6DG007600
rosa_wichuraiana	Rw1G040470 Rw1G040490 Rw6G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	2 cut(s)	357, 450
AciI	CCGC	5 cut(s)	183, 256, 286, 355, 425
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	568, 632
AjnI	CCWGG	2 cut(s)	43, 304
AluBI	AGCT	1 cut(s)	585
AluI	AGCT	1 cut(s)	585
Alw21I	GWGCWC	2 cut(s)	331, 470
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	2 cut(s)	244, 283
ApeKI	GCWGC	2 cut(s)	258, 585
AspLEI	GCGC	2 cut(s)	359, 671
AsuHPI	GGTGA	3 cut(s)	80, 286, 323
BaeI	ACNNNNGTAYC	2 cut(s)	79, 112
Bbv12I	GWGCWC	2 cut(s)	331, 470
BbvI	GCAGC	2 cut(s)	245, 572
BccI	CCATC	2 cut(s)	356, 496
BceAI	ACGGC	2 cut(s)	298, 559
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	2 cut(s)	45, 306
BclI	TGATCA	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	4 cut(s)	259, 286, 355, 586
BlsI	GCNGC	4 cut(s)	260, 287, 356, 587
Bme1390I	CCNGG	2 cut(s)	45, 306
BmrFI	CCNGG	2 cut(s)	45, 306
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	91, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	2 cut(s)	325, 460
Bse3DI	GCAATG	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	45, 306
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	91, 205
BseMI	GCAATG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	325, 460
BseRI	GAGGAG	1 cut(s)	563
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	245, 572
Bsh1236I	CGCG	2 cut(s)	357, 450
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	246, 285
BshVI	ATCGAT	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	331, 470
BsiSI	CCGG	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	246, 285
Bsp1286I	GDGCHC	2 cut(s)	331, 470
Bsp143I	GATC	5 cut(s)	21, 49, 483, 615, 637
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	5 cut(s)	183, 256, 286, 355, 425
BspANI	GGCC	2 cut(s)	246, 285
BspDI	ATCGAT	1 cut(s)	24
BspFNI	CGCG	2 cut(s)	357, 450
BspHI	TCATGA	2 cut(s)	657, 674
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	325, 460
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	2 cut(s)	91, 205
BssMI	GATC	5 cut(s)	21, 49, 483, 615, 637
BssT1I	CCWWGG	2 cut(s)	91, 205
Bst2UI	CCWGG	2 cut(s)	45, 306
Bst4CI	ACNGT	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	91
BstFNI	CGCG	2 cut(s)	357, 450
BstHHI	GCGC	2 cut(s)	359, 671
BstKTI	GATC	5 cut(s)	24, 52, 486, 618, 640
BstMBI	GATC	5 cut(s)	21, 49, 483, 615, 637
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 231
BstNI	CCWGG	2 cut(s)	45, 306
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	43, 304
BstUI	CGCG	2 cut(s)	357, 450
BstV1I	GCAGC	2 cut(s)	245, 572
BstZI	CGGCCG	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	246, 285
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 318
BveI	ACCTGC	1 cut(s)	309
CciI	TCATGA	2 cut(s)	657, 674
CfoI	GCGC	2 cut(s)	359, 671
Cfr10I	RCCGGY	1 cut(s)	665
ClaI	ATCGAT	1 cut(s)	24
CseI	GACGC	1 cut(s)	214
CviAII	CATG	4 cut(s)	92, 312, 658, 675
CviJI	RGCY	9 cut(s)	36, 43, 246, 285, 354, 473, 491, 517, 585
CviKI_1	RGCY	9 cut(s)	36, 43, 246, 285, 354, 473, 491, 517, 585
DpnI	GATC	5 cut(s)	23, 51, 485, 617, 639
DpnII	GATC	5 cut(s)	21, 49, 483, 615, 637
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	91, 205
Eco52I	CGGCCG	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	43, 304
EcoT14I	CCWWGG	2 cut(s)	91, 205
ErhI	CCWWGG	2 cut(s)	91, 205
FaeI	CATG	4 cut(s)	95, 315, 661, 678
FaiI	YATR	8 cut(s)	60, 93, 129, 313, 393, 599, 659, 676
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	91, 311, 657, 674
FauI	CCCGC	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	259, 286, 355, 586
Fsp4HI	GCNGC	4 cut(s)	259, 286, 355, 586
GlaI	GCGC	2 cut(s)	358, 670
GluI	GCNGC	4 cut(s)	259, 286, 355, 586
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	246, 285
HapII	CCGG	1 cut(s)	666
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	359, 671
Hin1II	CATG	4 cut(s)	95, 315, 661, 678
Hin6I	GCGC	2 cut(s)	357, 669
HinP1I	GCGC	2 cut(s)	357, 669
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	121, 162, 210
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	3 cut(s)	80, 286, 323
Hpy166II	GTNNAC	2 cut(s)	190, 229
Hpy188III	TCNNGA	5 cut(s)	338, 524, 641, 658, 675
Hpy8I	GTNNAC	2 cut(s)	190, 229
Hpy99I	CGWCG	2 cut(s)	230, 607
HpyAV	CCTTC	3 cut(s)	137, 344, 502
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	4 cut(s)	76, 174, 315, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 231
Hsp92II	CATG	4 cut(s)	95, 315, 661, 678
HspAI	GCGC	2 cut(s)	357, 669
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	5 cut(s)	21, 49, 483, 615, 637
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	245, 572
MaeIII	GTNAC	3 cut(s)	278, 343, 496
MalI	GATC	5 cut(s)	23, 51, 485, 617, 639
MboI	GATC	5 cut(s)	21, 49, 483, 615, 637
MboII	GAAGA	2 cut(s)	91, 512
MhlI	GDGCHC	2 cut(s)	331, 470
MluCI	AATT	3 cut(s)	71, 476, 625
MluI	ACGCGT	1 cut(s)	448
MlyI	GAGTC	2 cut(s)	171, 219
MnlI	CCTC	8 cut(s)	47, 248, 302, 409, 541, 567, 599, 637
MseI	TTAA	2 cut(s)	372, 609
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	2 cut(s)	45, 306
MvaI	CCWGG	2 cut(s)	45, 306
MvnI	CGCG	2 cut(s)	357, 450
MwoI	GCNNNNNNNGC	2 cut(s)	180, 231
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	5 cut(s)	21, 49, 483, 615, 637
NlaIII	CATG	4 cut(s)	95, 315, 661, 678
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	2 cut(s)	343, 496
NspI	RCATGY	1 cut(s)	315
PagI	TCATGA	2 cut(s)	657, 674
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	260, 287, 356, 587
PleI	GAGTC	2 cut(s)	170, 218
PpsI	GAGTC	2 cut(s)	170, 218
Psp6I	CCWGG	2 cut(s)	43, 304
PspGI	CCWGG	2 cut(s)	43, 304
RseI	CAYNNNNRTG	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	372, 609
SatI	GCNGC	4 cut(s)	259, 286, 355, 586
Sau3AI	GATC	5 cut(s)	21, 49, 483, 615, 637
SchI	GAGTC	2 cut(s)	171, 219
ScrFI	CCNGG	2 cut(s)	45, 306
SduI	GDGCHC	2 cut(s)	331, 470
SetI	ASST	5 cut(s)	294, 303, 336, 369, 587
SgrAI	CRCCGGYG	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	71, 476, 625
SsiI	CCGC	5 cut(s)	183, 256, 286, 355, 425
StyD4I	CCNGG	2 cut(s)	43, 304
StyI	CCWWGG	2 cut(s)	91, 205
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	24, 155, 228
TasI	AATT	3 cut(s)	71, 476, 625
TauI	GCSGC	2 cut(s)	288, 357
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	372, 609
Tru9I	TTAA	2 cut(s)	372, 609
TscAI	CASTG	2 cut(s)	176, 325
TseFI	GTSAC	2 cut(s)	343, 496
TseI	GCWGC	2 cut(s)	258, 585
Tsp45I	GTSAC	2 cut(s)	343, 496
TspDTI	ATGAA	2 cut(s)	91, 527
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	176, 325
XceI	RCATGY	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.