Rh1DG457900

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002037
Physical Location & Seq
Forward (+)
66268785 .. 66270196
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG457900.1

Sequence Viewer

Length: 489 bp
ATGCGCTTAGGTATCTTCATTGGGGGAGATCAAGTGATTCACTATAACAAAACAAAAGAAGGATACACATCGAAACTAGTCAAGCAGTACTGCAAAAACTGCGGGATAGACGAAAACCCCCTTCGAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAAACGCCACACCCTCCGCCGCTTCCAATACGCCGTGGATAAAGGCCGCTACCTCCTCAGCTGGCCAGGCACATGCACTACTGATCCTGCTGAACAGCCAGAAGTGACCATCAGCCGAGCCAATGACTTGTTTAACAAAAAAGATGGGTTCGGGGACTACAACTTGTTTGAGAACAACTGCGAGGCATTCGCGGTTTTCTGCAGGACGGGGAATCGTGTGAGCCACCAGGCGTGCTCAGCCAAGTTTTGGACCAAGCGTTCTTCTTCGCGATGTGTCGGTTCATGTTCATCACGGCGAGGACAAGTACAACAAGTTGAGGCAGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

162

Amino Acids

18.38

Weight (kDa)

9.04

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 4 - 125 1.5e-16 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 405
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 350, 427
AciI CCGC 5 cut(s) 102, 175, 178, 205, 350
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 221
AfaI GTAC 2 cut(s) 89, 465
AfiI CCNNNNNNNGG 2 cut(s) 125, 405
AhlI ACTAGT 1 cut(s) 76
AjnI CCWGG 2 cut(s) 223, 384
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 395
AlwI GGATC 1 cut(s) 236
AoxI GGCC 2 cut(s) 202, 221
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 408
AvaII GGWCC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 395
BbvCI CCTCAGC 1 cut(s) 215
BccI CCATC 2 cut(s) 275, 296
BceAI ACGGC 2 cut(s) 176, 467
BciT130I CCWGG 2 cut(s) 225, 386
BciVI GTATCC 1 cut(s) 56
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 358
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 2 cut(s) 178, 205
BlpI GCTNAGC 1 cut(s) 394
BlsI GCNGC 2 cut(s) 179, 206
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 225, 386
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmrFI CCNGG 2 cut(s) 225, 386
Bpu10I CCTNAGC 2 cut(s) 7, 215
Bpu1102I GCTNAGC 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 405
Bse8I GATNNNNATC 1 cut(s) 67
BseBI CCWGG 2 cut(s) 225, 386
BseDI CCNNGG 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 125, 405
BseMII CTCAG 2 cut(s) 229, 408
BseRI GAGGAG 2 cut(s) 141, 203
Bsh1236I CGCG 2 cut(s) 350, 427
BshFI GGCC 2 cut(s) 204, 223
BsiHKAI GWGCWC 1 cut(s) 395
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 125, 405
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 204, 223
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 2 cut(s) 28, 241
Bsp1720I GCTNAGC 1 cut(s) 394
Bsp68I TCGCGA 1 cut(s) 427
BspACI CCGC 5 cut(s) 102, 175, 178, 205, 350
BspANI GGCC 2 cut(s) 204, 223
BspCNI CTCAG 2 cut(s) 228, 407
BspFNI CGCG 2 cut(s) 350, 427
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 28, 241
Bst2UI CCWGG 2 cut(s) 225, 386
BstAPI GCANNNNNTGC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 221, 391
BstDEI CTNAG 3 cut(s) 7, 215, 394
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 2 cut(s) 350, 427
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 31, 244
BstMBI GATC 2 cut(s) 28, 241
BstMWI GCNNNNNNNGC 4 cut(s) 99, 150, 225, 395
BstNI CCWGG 2 cut(s) 225, 386
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 223, 384
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 2 cut(s) 350, 427
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 2 cut(s) 204, 223
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 442
BtuMI TCGCGA 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 221, 391
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 88, 464
CviAII CATG 2 cut(s) 231, 441
CviJI RGCY 8 cut(s) 204, 219, 223, 256, 273, 278, 381, 398
CviKI_1 RGCY 8 cut(s) 204, 219, 223, 256, 273, 278, 381, 398
CviQI GTAC 2 cut(s) 88, 464
DdeI CTNAG 3 cut(s) 7, 215, 394
DpnI GATC 2 cut(s) 30, 243
DpnII GATC 2 cut(s) 28, 241
EaeI YGGCCR 1 cut(s) 221
EciI GGCGGA 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 223, 384
FaeI CATG 2 cut(s) 234, 444
FaiI YATR 3 cut(s) 45, 232, 442
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 230, 440
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 178, 205
Fsp4HI GCNGC 2 cut(s) 178, 205
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 178, 205
HaeIII GGCC 2 cut(s) 204, 223
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 234, 444
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 37, 129, 370
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 426
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 53, 131
HpyCH4V TGCA 3 cut(s) 93, 234, 360
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 150, 225, 395
HpyF3I CTNAG 3 cut(s) 7, 215, 394
Hsp92II CATG 2 cut(s) 234, 444
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 28, 241
LpnPI CCDG 9 cut(s) 154, 205, 210, 237, 258, 270, 346, 371, 398
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 30, 243
MboI GATC 2 cut(s) 28, 241
MboII GAAGA 3 cut(s) 7, 411, 414
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 223
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 9 cut(s) 119, 167, 182, 221, 224, 334, 449, 469, 475
Mox20I TGGCCA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 223
MseI TTAA 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 223
MspA1I CMGCKG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 225, 386
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 2 cut(s) 225, 386
MvnI CGCG 2 cut(s) 350, 427
MwoI GCNNNNNNNGC 4 cut(s) 99, 150, 225, 395
NdeII GATC 2 cut(s) 28, 241
NlaIII CATG 2 cut(s) 234, 444
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 262
NruI TCGCGA 1 cut(s) 427
NspI RCATGY 1 cut(s) 234
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 2 cut(s) 37, 370
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 2 cut(s) 179, 206
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 223, 384
PspGI CCWGG 2 cut(s) 223, 384
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 219
RruI TCGCGA 1 cut(s) 427
RsaI GTAC 2 cut(s) 89, 465
RsaNI GTAC 2 cut(s) 88, 464
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 178, 205
Sau3AI GATC 2 cut(s) 28, 241
Sau96I GGNCC 1 cut(s) 408
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 225, 386
SduI GDGCHC 1 cut(s) 395
SetI ASST 3 cut(s) 13, 213, 221
SfcI CTRYAG 1 cut(s) 358
SinI GGWCC 1 cut(s) 408
SpeI ACTAGT 1 cut(s) 76
SsiI CCGC 5 cut(s) 102, 175, 178, 205, 350
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 223, 384
TaqI TCGA 3 cut(s) 71, 124, 147
TatI WGTACW 2 cut(s) 87, 463
TauI GCSGC 2 cut(s) 180, 207
TfiI GAWTC 2 cut(s) 37, 370
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 7, 429, 435
Van91I CCANNNNNTGG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 408
XceI RCATGY 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.