FvH4_2g00790

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002037
Physical Location & Seq
Forward (+)
803759 .. 804892
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00790.t1

Sequence Viewer

Length: 711 bp
ATGGGGCTGATCTCAAACAAGATTCATAGGAGCAACCTCCAGCCAGGAGATCACATCTACAGCTTCAGAAAATGGAAGTCTTACTCCCACCACGGAATATTTGTGGAGGCAGACAAGGTGATCCACTACACCAAAACCAGAAAAGAGGAACCAGCAAATAAACTGAGACGGAGGCCTGCTTGTGGAAAATGTGGTTTTGACCGAAAAGTTCATCGAGGAGTAGTCATATCTTGCCTTGATTGCTTTCTTTCAGGCTATGAGCTTTATCGGTTTGATTATGAAGTCCCCTATCACCATTTCCTCTTCAAAAGATCAGGAACTTGCAGCACCGGAAGCTGTGATGACCCTGCTGCAGTTATAAGCCGTGCCACAGACTTGCTCAACAGCCAAGATGGTTTTGGTGATTACAACCTTTTCGAAAACAATTGTGAATGCTTTGCGATTTACTGCAAAACAGGGAAGCATATGAGTGAGCAGGCATGTTCTGCCAAACTTACTATTAGAGCCGTTGCCCAAGCTGTCTTGGATCAAAACTCTGGTAGACTTCTTGAAGATGTGAGAGTTCATGACCCGGAGAATTACATGAACCTGAAGGAGAAGATTGACAAGTTGATTCCATTGCCCATCAACGAAATCATTGCCATTCTAGGAAAGCTGAATGCAAATGAGGAAGAAGTTGAGGAATTGGAGACAAACCAGACGATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

237

Amino Acids

26.97

Weight (kDa)

6.55

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 155 1.2e-23 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 703
AccI GTMKAC 1 cut(s) 541
AclWI GGATC 2 cut(s) 115, 534
AcuI CTGAAG 2 cut(s) 49, 611
AfiI CCNNNNNNNGG 2 cut(s) 182, 703
AgsI TTSAA 2 cut(s) 307, 551
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 5 cut(s) 63, 262, 336, 518, 655
AluI AGCT 5 cut(s) 63, 262, 336, 518, 655
Alw26I GTCTC 2 cut(s) 160, 683
AlwI GGATC 2 cut(s) 115, 534
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 324, 350
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 130, 284, 413
AsuII TTCGAA 1 cut(s) 417
BbvI GCAGC 2 cut(s) 336, 337
BccI CCATC 3 cut(s) 386, 632, 697
BceAI ACGGC 2 cut(s) 348, 491
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 160, 683
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 2 cut(s) 58, 351
BisI GCNGC 2 cut(s) 325, 351
BlsI GCNGC 2 cut(s) 326, 352
Bme1390I CCNGG 2 cut(s) 45, 572
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 45, 572
BpmI CTGGAG 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 703
Bse3DI GCAATG 2 cut(s) 617, 636
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 182, 703
BseMI GCAATG 2 cut(s) 617, 636
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 336, 337
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 2 cut(s) 330, 572
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 182, 703
BsmAI GTCTC 2 cut(s) 160, 683
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 437, 664
BsnI GGCC 1 cut(s) 175
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 5 cut(s) 9, 49, 120, 311, 526
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 2 cut(s) 115, 534
BspT104I TTCGAA 1 cut(s) 417
BsrDI GCAATG 2 cut(s) 617, 636
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 5 cut(s) 9, 49, 120, 311, 526
Bst2UI CCWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 177, 477
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 91
BstKTI GATC 5 cut(s) 12, 52, 123, 314, 529
BstMAI GTCTC 2 cut(s) 160, 683
BstMBI GATC 5 cut(s) 9, 49, 120, 311, 526
BstMWI GCNNNNNNNGC 3 cut(s) 240, 333, 485
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 43, 570
BstSFI CTRYAG 2 cut(s) 58, 351
BstV1I GCAGC 2 cut(s) 336, 337
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 177, 477
CciI TCATGA 1 cut(s) 565
CviAII CATG 3 cut(s) 480, 566, 583
DdeI CTNAG 1 cut(s) 164
DpnI GATC 5 cut(s) 11, 51, 122, 313, 528
DpnII GATC 5 cut(s) 9, 49, 120, 311, 526
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 49, 611
EcoRII CCWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 3 cut(s) 483, 569, 586
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 479, 565, 582
FauNDI CATATG 1 cut(s) 465
FblI GTMKAC 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 325, 351
Fsp4HI GCNGC 2 cut(s) 325, 351
FspBI CTAG 1 cut(s) 647
GluI GCNGC 2 cut(s) 325, 351
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 175
HapII CCGG 2 cut(s) 330, 572
Hin1II CATG 3 cut(s) 483, 569, 586
HinfI GANTC 2 cut(s) 22, 613
HpaII CCGG 2 cut(s) 330, 572
HphI GGTGA 3 cut(s) 130, 284, 413
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 315, 548, 566
Hpy8I GTNNAC 1 cut(s) 542
HpyAV CCTTC 1 cut(s) 586
HpyCH4V TGCA 4 cut(s) 324, 353, 450, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 333, 485
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 3 cut(s) 483, 569, 586
Kzo9I GATC 5 cut(s) 9, 49, 120, 311, 526
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 2 cut(s) 336, 337
MaeI CTAG 1 cut(s) 647
MalI GATC 5 cut(s) 11, 51, 122, 313, 528
MboI GATC 5 cut(s) 9, 49, 120, 311, 526
MboII GAAGA 4 cut(s) 295, 563, 610, 683
MfeI CAATTG 1 cut(s) 424
MluCI AATT 3 cut(s) 424, 577, 683
MnlI CCTC 8 cut(s) 47, 100, 139, 165, 209, 311, 661, 673
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 2 cut(s) 330, 572
MspR9I CCNGG 2 cut(s) 45, 572
MunI CAATTG 1 cut(s) 424
Mva1269I GAATGC 2 cut(s) 437, 664
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 240, 333, 485
NciI CCSGG 1 cut(s) 572
NdeI CATATG 1 cut(s) 465
NdeII GATC 5 cut(s) 9, 49, 120, 311, 526
NlaIII CATG 3 cut(s) 483, 569, 586
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 1 cut(s) 483
NspV TTCGAA 1 cut(s) 417
PagI TCATGA 1 cut(s) 565
PceI AGGCCT 1 cut(s) 175
PctI GAATGC 2 cut(s) 437, 664
PfeI GAWTC 2 cut(s) 22, 613
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 2 cut(s) 326, 352
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 468
SatI GCNGC 2 cut(s) 325, 351
Sau3AI GATC 5 cut(s) 9, 49, 120, 311, 526
ScrFI CCNGG 2 cut(s) 45, 572
SetI ASST 9 cut(s) 39, 65, 120, 264, 338, 414, 520, 591, 657
SfcI CTRYAG 2 cut(s) 58, 351
SfuI TTCGAA 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 468
Sse9I AATT 3 cut(s) 424, 577, 683
SseBI AGGCCT 1 cut(s) 175
SspI AATATT 1 cut(s) 99
SspMI CTAG 1 cut(s) 647
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 43, 570
TaqI TCGA 2 cut(s) 214, 417
TaqII GACCGA 1 cut(s) 216
TasI AATT 3 cut(s) 424, 577, 683
TfiI GAWTC 2 cut(s) 22, 613
TseI GCWGC 2 cut(s) 324, 350
TspDTI ATGAA 5 cut(s) 14, 200, 294, 554, 599
TspGWI ACGGA 2 cut(s) 108, 184
Van91I CCANNNNNTGG 1 cut(s) 703
XceI RCATGY 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 541
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.