Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002037

Physical Location & Seq

Genomic Coordinates Reverse (-)

17992333 .. 17993550

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAATACTTTCAAACAGGATTTCTAGGGAGGAGCTCCGGGCAGGAGATCACATCTATGCTTATAGACGCGGGCATACATTCTCCCACCATGGTATATATGTTGGGAAAGATTTGGTGATTCATTTCACTTCAACAAATGATCCAATAAATAGTAGCTCATCGAGAGAGCCTCCATGTGAAAAGTGCGGGCATGACCCAAACACGAAACGGGGAGTGCTGAGAACCTGCATCAATTGCTTCCTAAAAGGCCACCGCCTGCTTCGCTTCGAATACGAGGTCTCTCGACTCCACTTCATATCCAAACATAAAGGAACTTGTAGTACTGAGTGTTGCTATGCAAACGAGGAAACTATACGTCGTGCCACCGAGATTTTCAACAAAGATAAGGTTCATGGGAAGGGGTTTGGTGACTACGACTTGCTTGATAACAATTGCGAAAACTTTGCCAGTTATTGCAAAAGAGGCACGCCCGTGAGCGAGCAGGCTCTCAAGGCAATGGGTATTGCAGCTGCATCCTCTAGCACCGATACTCAAACCTCATCTACTTCCAAGACTGCCATGCTTCTGTCTTTTTTTTCTTCCAAGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

199

Amino Acids

22.14

Weight (kDa)

8.85

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002037)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00790 FvH4_7g33470 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520
malus_domestica	MD01G1232800.v1.1 MD07G1305200.v1.1
prunus_persica	Prupe.6G174600_v2.0.a1 Prupe.6G175500_v2.0.a1 Prupe.6G175600_v2.0.a1
pyrus_communis	pycom01g24120 pycom07g24650
rosa_chinensis	RchiOBHm_Chr1g0383441 RchiOBHm_Chr1g0383561 RchiOBHm_Chr1g0383641 RchiOBHm_Chr1g0383731 RchiOBHm_Chr6g0251191
rosa_laevigata	RLG00000015475 RLG00000026100
rosa_multiflora	Rmu_co8276961.1_g000001 Rmu_sc0004077.1_g000010 Rmu_sc0012471.1_g000014 Rmu_sc0012471.1_g000024
rosa_roxburghii	Rroxscaffold_4G00277260 Rroxscaffold_4G00277270 Rroxscaffold_7G00216940
rosa_rugosa	Rorug01G0442000 Rorug05G0500600
rosa_samantha	Rh1AG467500 Rh1AG467700 Rh1BG424700 Rh1BG425100 Rh1CG437800 Rh1CG438000 Rh1DG457500 Rh1DG457900 Rh6AG010000 Rh6BG002000 Rh6CG007100 Rh6DG007600
rosa_wichuraiana	Rw1G040470 Rw1G040490 Rw6G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	72, 189, 256
AclWI	GGATC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	15, 135, 379
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	3 cut(s)	37, 159, 512
AluI	AGCT	3 cut(s)	37, 159, 512
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	509, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
Asp700I	GAANNNNTTC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	130, 422
AsuII	TTCGAA	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	499, 521
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	2 cut(s)	27, 522
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	510, 513
BlsI	GCNGC	2 cut(s)	511, 514
BmcAI	AGTACT	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	240, 524
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	212, 318
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	499, 521
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	49, 142
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	3 cut(s)	72, 189, 256
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	213, 319
BspFNI	CGCG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	49, 142
BssT1I	CCWWGG	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	6 cut(s)	74, 191, 260, 470, 482, 486
BstDEI	CTNAG	2 cut(s)	221, 327
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	515
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	52, 145
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	49, 142
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 264, 465, 494
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	499, 521
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	6 cut(s)	74, 191, 260, 470, 482, 486
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	5 cut(s)	92, 177, 194, 395, 562
CviJI	RGCY	6 cut(s)	37, 159, 172, 252, 488, 512
CviKI_1	RGCY	6 cut(s)	37, 159, 172, 252, 488, 512
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	2 cut(s)	221, 327
DpnI	GATC	2 cut(s)	51, 144
DpnII	GATC	2 cut(s)	49, 142
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	5 cut(s)	95, 180, 197, 398, 565
FatI	CATG	5 cut(s)	91, 176, 193, 394, 561
FauI	CCCGC	2 cut(s)	65, 182
Fnu4HI	GCNGC	2 cut(s)	510, 513
FokI	GGATG	1 cut(s)	502
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	510, 513
FspBI	CTAG	2 cut(s)	27, 522
GluI	GCNGC	2 cut(s)	510, 513
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	95, 180, 197, 398, 565
HinfI	GANTC	2 cut(s)	121, 288
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	2 cut(s)	130, 422
Hpy188III	TCNNGA	2 cut(s)	165, 285
Hpy99I	CGWCG	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	231, 341, 459, 509, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 264, 465, 494
HpyF3I	CTNAG	2 cut(s)	221, 327
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	5 cut(s)	95, 180, 197, 398, 565
Kzo9I	GATC	2 cut(s)	49, 142
LmnI	GCTCC	2 cut(s)	34, 42
LpnPI	CCDG	7 cut(s)	4, 30, 53, 241, 272, 463, 470
Lsp1109I	GCAGC	2 cut(s)	499, 521
LweI	GCATC	2 cut(s)	240, 524
MaeI	CTAG	2 cut(s)	27, 522
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	51, 144
MboI	GATC	2 cut(s)	49, 142
MboII	GAAGA	1 cut(s)	573
MfeI	CAATTG	2 cut(s)	235, 433
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	2 cut(s)	235, 433
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	25, 183, 271, 340, 458, 529, 550
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	1 cut(s)	595
MslI	CAYNNNNRTG	2 cut(s)	57, 473
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	2 cut(s)	235, 433
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	237, 264, 465, 494
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	49, 142
NlaIII	CATG	5 cut(s)	95, 180, 197, 398, 565
NmuCI	GTSAC	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	511, 514
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	307, 339
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	2 cut(s)	57, 473
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	595
SatI	GCNGC	2 cut(s)	510, 513
Sau3AI	GATC	2 cut(s)	49, 142
ScaI	AGTACT	1 cut(s)	325
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	8 cut(s)	39, 161, 230, 282, 361, 393, 514, 542
SfaNI	GCATC	2 cut(s)	240, 524
SfuI	TTCGAA	1 cut(s)	270
SmiMI	CAYNNNNRTG	2 cut(s)	57, 473
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	235, 433
SsiI	CCGC	3 cut(s)	72, 189, 256
SspMI	CTAG	2 cut(s)	27, 522
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	164, 270, 286
TasI	AATT	2 cut(s)	235, 433
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	595
Tru9I	TTAA	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	509, 512
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	113, 286, 383
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	2 cut(s)	27, 522
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.