RchiOBHm_Chr1g0383441

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002037
Physical Location & Seq
Forward (+)
67756046 .. 67756743
698 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60638

Sequence Viewer

Length: 609 bp
ATGTTCGTAGAGTCAAAATATCAGAACAAGCTGAAAAGGTATGATATTAATTCTTATCCAGCTCATGTATGTAAAACTTCAATCCCTAGGTTGCATATGGCCAGCTCTCGCTCAAGTAGTTTGACAGAAATGCACCGTACGCGTTTTATAAACAAGATCGACAAAGAGAGCCTCGAGCGTGGAGATCATATTTATGCTTACAGAAAGGGTGGCTTGTACTCCCACCATGGAATCTTCATTGGGGAAGATAGAGTGATTCACTTCGTCAGAACAAATGAGGGAAACACATCGAGACGAGTCGAGCCATGCCAAAAGTGCGGGGTTGACAAAAATCACCTCCGAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAATGGCCACAGCCTCCGCCGCTACCGATACAGTGCAAGTCATCGCCGCTTTGCTACCAACCTTGGAGGCACCTGCACCACCGGCGATGCTGACCCGCCAGATGTGACCATCAGCCGCGCCGAAGACCTGTTTAACACGAAAGATTTTGGGGACTATGACTTGCTTAAGAACAACTGCGAGACCTTTGCGGTGTTCTGCAAGACGGGGAAGCACTACTACAGAAAACCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

202

Amino Acids

23.31

Weight (kDa)

9.4

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 57 - 196 3.3e-25 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AarI CACCTGC 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 142, 492
AciI CCGC 7 cut(s) 318, 391, 394, 421, 470, 490, 563
AcoI YGGCCR 2 cut(s) 99, 379
AfaI GTAC 2 cut(s) 139, 218
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 1 cut(s) 81
AluBI AGCT 3 cut(s) 31, 62, 105
AluI AGCT 3 cut(s) 31, 62, 105
Alw26I GTCTC 2 cut(s) 286, 548
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 99, 379
AseI ATTAAT 1 cut(s) 48
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 86
BalI TGGCCA 2 cut(s) 101, 381
BanI GGYRCC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
BbsI GAAGAC 1 cut(s) 504
BccI CCATC 1 cut(s) 491
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BcoDI GTCTC 2 cut(s) 286, 548
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 592
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 455
BisI GCNGC 3 cut(s) 394, 421, 490
BlnI CCTAGG 1 cut(s) 86
BlsI GCNGC 3 cut(s) 395, 422, 491
BmeT110I CYCGRG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 445
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 4 cut(s) 86, 226, 340, 436
Bse118I RCCGGY 1 cut(s) 455
BseDI CCNNGG 4 cut(s) 86, 226, 340, 436
BseRI GAGGAG 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 142, 492
BshFI GGCC 2 cut(s) 101, 381
BshNI GGYRCC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 456
BsiWI CGTACG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 539
BsmAI GTCTC 2 cut(s) 286, 548
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 2 cut(s) 101, 381
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 2 cut(s) 156, 184
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 7 cut(s) 318, 391, 394, 421, 470, 490, 563
BspANI GGCC 2 cut(s) 101, 381
BspFNI CGCG 2 cut(s) 142, 492
BspLI GGNNCC 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 4 cut(s) 86, 226, 340, 436
BssMI GATC 2 cut(s) 156, 184
BssT1I CCWWGG 3 cut(s) 86, 226, 436
Bst4CI ACNGT 2 cut(s) 137, 407
BstAFI CTTAAG 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 142, 492
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 2 cut(s) 159, 187
BstMAI GTCTC 2 cut(s) 286, 548
BstMBI GATC 2 cut(s) 156, 184
BstMWI GCNNNNNNNGC 5 cut(s) 139, 315, 366, 393, 456
BstSFI CTRYAG 1 cut(s) 592
BstUI CGCG 2 cut(s) 142, 492
BstV2I GAAGAC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 101, 381
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 2 cut(s) 401, 474
BtsIMutI CAGTG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 494
Cfr10I RCCGGY 1 cut(s) 455
CseI GACGC 1 cut(s) 349
Csp6I GTAC 2 cut(s) 138, 217
CviAII CATG 3 cut(s) 65, 227, 306
CviQI GTAC 2 cut(s) 138, 217
DpnI GATC 2 cut(s) 158, 186
DpnII GATC 2 cut(s) 156, 184
EaeI YGGCCR 2 cut(s) 99, 379
EciI GGCGGA 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 86, 226, 436
Eco31I GGTCTC 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 173
EcoT14I CCWWGG 3 cut(s) 86, 226, 436
ErhI CCWWGG 3 cut(s) 86, 226, 436
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 3 cut(s) 68, 230, 309
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 539
FatI CATG 3 cut(s) 64, 226, 305
FauI CCCGC 2 cut(s) 311, 477
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 394, 421, 490
Fsp4HI GCNGC 3 cut(s) 394, 421, 490
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 493
GluI GCNGC 3 cut(s) 394, 421, 490
HaeIII GGCC 2 cut(s) 101, 381
HapII CCGG 1 cut(s) 456
HgaI GACGC 1 cut(s) 349
HhaI GCGC 1 cut(s) 494
Hin1II CATG 3 cut(s) 68, 230, 309
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HincII GTYRAC 2 cut(s) 325, 364
HindII GTYRAC 2 cut(s) 325, 364
HinfI GANTC 5 cut(s) 11, 231, 256, 297, 345
HpaII CCGG 1 cut(s) 456
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 325, 364
Hpy188I TCNGA 3 cut(s) 24, 269, 341
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 2 cut(s) 325, 364
Hpy99I CGWCG 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 137, 407
HpyCH4V TGCA 5 cut(s) 94, 133, 410, 450, 573
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 315, 366, 393, 456
Hsp92II CATG 3 cut(s) 68, 230, 309
HspAI GCGC 1 cut(s) 492
Kzo9I GATC 2 cut(s) 156, 184
LpnPI CCDG 7 cut(s) 72, 115, 370, 460, 469, 486, 515
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 158, 186
MboI GATC 2 cut(s) 156, 184
MboII GAAGA 3 cut(s) 226, 257, 509
MlsI TGGCCA 2 cut(s) 101, 381
MluCI AATT 1 cut(s) 49
MluI ACGCGT 1 cut(s) 140
MluNI TGGCCA 2 cut(s) 101, 381
MlyI GAGTC 3 cut(s) 20, 306, 354
MnlI CCTC 7 cut(s) 182, 271, 335, 347, 383, 398, 434
Mox20I TGGCCA 2 cut(s) 101, 381
MscI TGGCCA 2 cut(s) 101, 381
MseI TTAA 3 cut(s) 48, 507, 540
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 2 cut(s) 101, 381
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 1 cut(s) 456
MvnI CGCG 2 cut(s) 142, 492
MwoI GCNNNNNNNGC 5 cut(s) 139, 315, 366, 393, 456
NcoI CCATGG 1 cut(s) 226
NdeI CATATG 1 cut(s) 96
NdeII GATC 2 cut(s) 156, 184
NlaIII CATG 3 cut(s) 68, 230, 309
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 173
PaqCI CACCTGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 231, 256
Pfl23II CGTACG 1 cut(s) 137
PkrI GCNGC 3 cut(s) 395, 422, 491
PleI GAGTC 3 cut(s) 19, 305, 353
PpsI GAGTC 3 cut(s) 19, 305, 353
PshBI ATTAAT 1 cut(s) 48
PsiI TTATAA 1 cut(s) 149
PspLI CGTACG 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 445
PspXI VCTCGAGB 1 cut(s) 173
RsaI GTAC 2 cut(s) 139, 218
RsaNI GTAC 2 cut(s) 138, 217
RseI CAYNNNNRTG 1 cut(s) 192
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 48, 507, 540
SatI GCNGC 3 cut(s) 394, 421, 490
Sau3AI GATC 2 cut(s) 156, 184
SchI GAGTC 3 cut(s) 20, 306, 354
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 592
Sfr274I CTCGAG 1 cut(s) 173
SgrAI CRCCGGYG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 3 cut(s) 112, 173, 539
SmoI CTYRAG 3 cut(s) 112, 173, 539
Sse9I AATT 1 cut(s) 49
SsiI CCGC 7 cut(s) 318, 391, 394, 421, 470, 490, 563
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 3 cut(s) 86, 226, 436
TaaI ACNGT 2 cut(s) 137, 407
TaqI TCGA 5 cut(s) 159, 174, 290, 300, 363
TasI AATT 1 cut(s) 49
TatI WGTACW 1 cut(s) 216
TauI GCSGC 3 cut(s) 396, 423, 492
TfiI GAWTC 2 cut(s) 231, 256
Tru1I TTAA 3 cut(s) 48, 507, 540
Tru9I TTAA 3 cut(s) 48, 507, 540
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 226
TspRI CASTG 1 cut(s) 412
Vha464I CTTAAG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.