Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012471.1

Orthogroup ID

OG0002037

Physical Location & Seq

Genomic Coordinates Reverse (-)

99329 .. 99985

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012471.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgcgcttaggaatcttcattggggaagatagagtgattcacttcgtcagaacaaatgagggaaacacatcgagacgagtcgagccatgccaaaagtgcggggttgacaaaaatcacctccgaggagtcgtcaagtcctgcgtcgactgcttcctcaatggccacagcctccgccgttaccgatacagtgcaagtcatcgccgctttgctaccaaccttggaggcacctgcaccaccggcgatgctgacccgccagatgtgaccatcagccgcgccgaagacctgtttaacacgaaagattttggggactatgacttgcttaagaacaactgcgagacctttgcggtgttctgcaagacggggaagcgcaggagcgaccaggcggacacgggaatattgctgatcaaggcggcggttgaggtggcgattaagaggctttatcgtgatgtggagactcatcacggcgaggacaagatcaaagagttaaagcaggcgattgacaggttttttagtggtctagatctgtcgattcaacacggcagggaaaagctcaacgagttcaagcagatgattgaagggtggctcgctaatagttcgtcgcttgaagagatacgtgacggattaaaaaatcttgaaaaggatcaggagcgtcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

218

Amino Acids

24.89

Weight (kDa)

8.14

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002037)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00790 FvH4_7g33470 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520
malus_domestica	MD01G1232800.v1.1 MD07G1305200.v1.1
prunus_persica	Prupe.6G174600_v2.0.a1 Prupe.6G175500_v2.0.a1 Prupe.6G175600_v2.0.a1
pyrus_communis	pycom01g24120 pycom07g24650
rosa_chinensis	RchiOBHm_Chr1g0383441 RchiOBHm_Chr1g0383561 RchiOBHm_Chr1g0383641 RchiOBHm_Chr1g0383731 RchiOBHm_Chr6g0251191
rosa_laevigata	RLG00000015475 RLG00000026100
rosa_multiflora	Rmu_co8276961.1_g000001 Rmu_sc0004077.1_g000010 Rmu_sc0012471.1_g000014 Rmu_sc0012471.1_g000024
rosa_roxburghii	Rroxscaffold_4G00277260 Rroxscaffold_4G00277270 Rroxscaffold_7G00216940
rosa_rugosa	Rorug01G0442000 Rorug05G0500600
rosa_samantha	Rh1AG467500 Rh1AG467700 Rh1BG424700 Rh1BG425100 Rh1CG437800 Rh1CG438000 Rh1DG457500 Rh1DG457900 Rh6AG010000 Rh6BG002000 Rh6CG007100 Rh6DG007600
rosa_wichuraiana	Rw1G040470 Rw1G040490 Rw6G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	273
AciI	CCGC	9 cut(s)	99, 172, 202, 251, 271, 344, 383, 410, 413
AclWI	GGATC	1 cut(s)	648
AcoI	YGGCCR	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	5 cut(s)	533, 562, 575, 605, 635
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
Alw26I	GTCTC	3 cut(s)	67, 329, 446
AlwI	GGATC	1 cut(s)	648
AoxI	GGCC	1 cut(s)	160
AspLEI	GCGC	3 cut(s)	6, 275, 369
AsuHPI	GGTGA	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	285
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	3 cut(s)	159, 478, 553
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	3 cut(s)	67, 329, 446
BfaI	CTAG	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	3 cut(s)	202, 271, 411
BlsI	GCNGC	3 cut(s)	203, 272, 412
Bme1390I	CCNGG	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	121, 217
Bse118I	RCCGGY	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	121, 217
BseRI	GAGGAG	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	320
BsmAI	GTCTC	3 cut(s)	67, 329, 446
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	402, 474, 520, 640
BspACI	CCGC	9 cut(s)	99, 172, 202, 251, 271, 344, 383, 410, 413
BspANI	GGCC	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	121, 217
BssMI	GATC	4 cut(s)	402, 474, 520, 640
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	600
BstAFI	CTTAAG	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	492, 585
BstDEI	CTNAG	1 cut(s)	7
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	3 cut(s)	6, 275, 369
BstKTI	GATC	4 cut(s)	405, 477, 523, 643
BstMAI	GTCTC	3 cut(s)	67, 329, 446
BstMBI	GATC	4 cut(s)	402, 474, 520, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 147, 237
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	162
BtgZI	GCGATG	2 cut(s)	182, 255
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	492, 585
CfoI	GCGC	3 cut(s)	6, 275, 369
Cfr10I	RCCGGY	1 cut(s)	236
CseI	GACGC	2 cut(s)	130, 638
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	7 cut(s)	85, 162, 168, 270, 436, 550, 583
CviKI_1	RGCY	7 cut(s)	85, 162, 168, 270, 436, 550, 583
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	4 cut(s)	404, 476, 522, 642
DpnII	GATC	4 cut(s)	402, 474, 520, 640
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
EciI	GGCGGA	2 cut(s)	161, 398
Eco130I	CCWWGG	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 312
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	1 cut(s)	86
FauI	CCCGC	2 cut(s)	92, 258
FbaI	TGATCA	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	202, 271, 411
Fsp4HI	GCNGC	3 cut(s)	202, 271, 411
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	3 cut(s)	5, 274, 368
GluI	GCNGC	3 cut(s)	202, 271, 411
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	2 cut(s)	130, 638
HhaI	GCGC	3 cut(s)	6, 275, 369
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	3 cut(s)	4, 273, 367
HinP1I	GCGC	3 cut(s)	4, 273, 367
HincII	GTYRAC	2 cut(s)	106, 145
HindII	GTYRAC	2 cut(s)	106, 145
HinfI	GANTC	6 cut(s)	12, 37, 78, 126, 454, 529
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	106, 145
Hpy188I	TCNGA	2 cut(s)	50, 122
Hpy188III	TCNNGA	5 cut(s)	72, 443, 518, 632, 644
Hpy8I	GTNNAC	2 cut(s)	106, 145
Hpy99I	CGWCG	2 cut(s)	146, 601
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	3 cut(s)	191, 231, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 147, 237
HpyF3I	CTNAG	1 cut(s)	7
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	3 cut(s)	4, 273, 367
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	402, 474, 520, 640
LmnI	GCTCC	2 cut(s)	372, 646
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	3 cut(s)	176, 259, 614
MalI	GATC	4 cut(s)	404, 476, 522, 642
MboI	GATC	4 cut(s)	402, 474, 520, 640
MboII	GAAGA	4 cut(s)	7, 38, 290, 617
MflI	RGATCY	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	87, 135, 448
MnlI	CCTC	9 cut(s)	52, 116, 128, 164, 179, 215, 412, 426, 460
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	6 cut(s)	288, 321, 429, 485, 623, 655
Msp20I	TGGCCA	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	96, 147, 237
NdeII	GATC	4 cut(s)	402, 474, 520, 640
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	259, 614
PaqCI	CACCTGC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	12, 37, 529
PkrI	GCNGC	3 cut(s)	203, 272, 412
PleI	GAGTC	3 cut(s)	86, 134, 448
PpsI	GAGTC	3 cut(s)	86, 134, 448
Ppu21I	YACGTR	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	520
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	6 cut(s)	288, 321, 429, 485, 623, 655
SatI	GCNGC	3 cut(s)	202, 271, 411
Sau3AI	GATC	4 cut(s)	402, 474, 520, 640
SchI	GAGTC	3 cut(s)	87, 135, 448
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	9 cut(s)	120, 219, 230, 285, 341, 423, 506, 552, 616
SfaNI	GCATC	1 cut(s)	232
SgrAI	CRCCGGYG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SsiI	CCGC	9 cut(s)	99, 172, 202, 251, 271, 344, 383, 410, 413
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	4 cut(s)	71, 81, 144, 527
TauI	GCSGC	3 cut(s)	204, 273, 413
TfiI	GAWTC	3 cut(s)	12, 37, 529
Tru1I	TTAA	6 cut(s)	288, 321, 429, 485, 623, 655
Tru9I	TTAA	6 cut(s)	288, 321, 429, 485, 623, 655
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	259, 614
Tsp45I	GTSAC	2 cut(s)	259, 614
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	320
XbaI	TCTAGA	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.