Rw1G040470

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002037
Physical Location & Seq
Reverse (-)
67735905 .. 67736662
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040470.1

Sequence Viewer

Length: 666 bp
ATGGAGTATATTATAAACGAGATCGATAGAGAGAGCCTCAGGCCTGGAGATCATATCTATGCTTACAGAAAATTACACTCCTACTCCCACCATGGTATCTTCATTGGGGGAGATAGAGTGATTCACTATAACATAACACAAGAAGGAAACACATCGAAACGAACCAAGCATTGCAAAAACTGCGGGATAGACAAAAACCACCTCCGAGGAGTCGTCAAATCCTGCGTCGACTGTTTCCTCAAACGCCACACCCTCCGCCGCTTCCAATACGCCCTCGGTTATGGCCGCTACCTCACCAACTGGCCAGGCACCTGCACCACCGGCCGTGCTGACCCGCCAGAAGTGACCATCAGCCGCGCCAATGACCTGTTTAACAATAAAGTTGAGTTTGGGGATTATAACTTGTTTGAGAACAACTGCGAGGCCTTTGCAGTGTTCTGCAAGACGGGGAAGCGCGTGAGCGACCAGGCGAGCGTGGCCATGTCGTGGATGAAGGCTGGTGTGAAGATGGCGAGGGATAGGCTTCTTCGTGATGTGTGGGTTCATCACGGCGAGGAGCAGTACAACAGGTTGAAGCAGATGATTGATAGCTGGCTCGCTCAAACGTCGTCGCTTGCACAGATGATTGCCAATCTTCAAGGGGATCATCAGGTCACCGGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

221

Amino Acids

25.4

Weight (kDa)

9.05

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 152 5e-23 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 14, 399
AarI CACCTGC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 486
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 357, 456
AciI CCGC 6 cut(s) 183, 256, 259, 286, 335, 355
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 4 cut(s) 283, 302, 322, 477
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 2 cut(s) 574, 638
AjnI CCWGG 3 cut(s) 43, 304, 465
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
AlwI GGATC 1 cut(s) 651
AoxI GGCC 6 cut(s) 41, 283, 302, 322, 423, 477
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspLEI GCGC 3 cut(s) 359, 456, 662
AsuHPI GGTGA 2 cut(s) 286, 646
AxyI CCTNAGG 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 2 cut(s) 304, 479
BanI GGYRCC 1 cut(s) 308
BccI CCATC 2 cut(s) 356, 502
BceAI ACGGC 2 cut(s) 309, 565
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 45, 306, 467
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 3 cut(s) 259, 286, 355
BlsI GCNGC 3 cut(s) 260, 287, 356
Bme1390I CCNGG 3 cut(s) 45, 306, 467
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 3 cut(s) 45, 306, 467
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 91, 205, 274
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse118I RCCGGY 2 cut(s) 320, 656
Bse1I ACTGG 1 cut(s) 305
Bse21I CCTNAGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 3 cut(s) 45, 306, 467
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 91, 205, 274
BseGI GGATG 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 222, 569
BseX3I CGGCCG 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 298
Bsh1236I CGCG 2 cut(s) 357, 456
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 6 cut(s) 43, 285, 304, 324, 425, 479
BshNI GGYRCC 1 cut(s) 308
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 321, 657
BslI CCNNNNNNNGG 1 cut(s) 486
BsnI GGCC 6 cut(s) 43, 285, 304, 324, 425, 479
Bsp143I GATC 3 cut(s) 21, 49, 643
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 6 cut(s) 183, 256, 259, 286, 335, 355
BspANI GGCC 6 cut(s) 43, 285, 304, 324, 425, 479
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 2 cut(s) 357, 456
BspLI GGNNCC 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 2 cut(s) 320, 656
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 2 cut(s) 320, 656
BssECI CCNNGG 3 cut(s) 91, 205, 274
BssMI GATC 3 cut(s) 21, 49, 643
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 3 cut(s) 45, 306, 467
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 472, 593, 597, 615
BstDEI CTNAG 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 91
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 2 cut(s) 357, 456
BstHHI GCGC 3 cut(s) 359, 456, 662
BstKTI GATC 3 cut(s) 24, 52, 646
BstMBI GATC 3 cut(s) 21, 49, 643
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 3 cut(s) 180, 321, 476
BstNI CCWGG 3 cut(s) 45, 306, 467
BstPI GGTNACC 1 cut(s) 652
BstSCI CCNGG 3 cut(s) 43, 304, 465
BstUI CGCG 2 cut(s) 357, 456
BstZI CGGCCG 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 6 cut(s) 43, 285, 304, 324, 425, 479
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 495
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 4 cut(s) 472, 593, 597, 615
CfoI GCGC 3 cut(s) 359, 456, 662
Cfr10I RCCGGY 2 cut(s) 320, 656
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 562
CviAII CATG 3 cut(s) 92, 481, 663
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 23, 51, 645
DpnII GATC 3 cut(s) 21, 49, 643
EaeI YGGCCR 4 cut(s) 283, 302, 322, 477
EagI CGGCCG 1 cut(s) 322
EciI GGCGGA 1 cut(s) 245
EclXI CGGCCG 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 91
Eco147I AGGCCT 2 cut(s) 43, 425
Eco52I CGGCCG 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 652
EcoRII CCWGG 3 cut(s) 43, 304, 465
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 95, 484, 666
FatI CATG 3 cut(s) 91, 480, 662
FauI CCCGC 2 cut(s) 176, 342
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 3 cut(s) 259, 286, 355
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 3 cut(s) 259, 286, 355
GlaI GCGC 3 cut(s) 358, 455, 661
GluI GCNGC 3 cut(s) 259, 286, 355
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 6 cut(s) 43, 285, 304, 324, 425, 479
HapII CCGG 2 cut(s) 321, 657
HgaI GACGC 1 cut(s) 214
HhaI GCGC 3 cut(s) 359, 456, 662
Hin1II CATG 3 cut(s) 95, 484, 666
Hin6I GCGC 3 cut(s) 357, 454, 660
HinP1I GCGC 3 cut(s) 357, 454, 660
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 121, 210
HpaII CCGG 2 cut(s) 321, 657
HphI GGTGA 2 cut(s) 286, 646
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 3 cut(s) 230, 610, 613
HpyAV CCTTC 2 cut(s) 137, 487
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 5 cut(s) 174, 315, 431, 441, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 321, 476
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 3 cut(s) 95, 484, 666
HspAI GCGC 3 cut(s) 357, 454, 660
Kzo9I GATC 3 cut(s) 21, 49, 643
LmnI GCTCC 1 cut(s) 556
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 2 cut(s) 343, 652
MalI GATC 3 cut(s) 23, 51, 645
MboI GATC 3 cut(s) 21, 49, 643
MboII GAAGA 4 cut(s) 91, 517, 518, 626
MlsI TGGCCA 2 cut(s) 304, 479
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 2 cut(s) 304, 479
MlyI GAGTC 1 cut(s) 219
Mox20I TGGCCA 2 cut(s) 304, 479
MscI TGGCCA 2 cut(s) 304, 479
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 2 cut(s) 304, 479
MspI CCGG 2 cut(s) 321, 657
MspR9I CCNGG 3 cut(s) 45, 306, 467
MvaI CCWGG 3 cut(s) 45, 306, 467
MvnI CGCG 2 cut(s) 357, 456
MwoI GCNNNNNNNGC 3 cut(s) 180, 321, 476
NcoI CCATGG 1 cut(s) 91
NdeII GATC 3 cut(s) 21, 49, 643
NlaIII CATG 3 cut(s) 95, 484, 666
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 343, 652
PaqCI CACCTGC 1 cut(s) 320
PceI AGGCCT 2 cut(s) 43, 425
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 3 cut(s) 260, 287, 356
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PsiI TTATAA 2 cut(s) 14, 399
Psp6I CCWGG 3 cut(s) 43, 304, 465
PspEI GGTNACC 1 cut(s) 652
PspGI CCWGG 3 cut(s) 43, 304, 465
PspN4I GGNNCC 1 cut(s) 310
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 3 cut(s) 259, 286, 355
Sau3AI GATC 3 cut(s) 21, 49, 643
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 3 cut(s) 45, 306, 467
SetI ASST 8 cut(s) 204, 294, 314, 369, 572, 593, 608, 654
SgrAI CRCCGGYG 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 1 cut(s) 71
SseBI AGGCCT 2 cut(s) 43, 425
SsiI CCGC 6 cut(s) 183, 256, 259, 286, 335, 355
StuI AGGCCT 2 cut(s) 43, 425
StyD4I CCNGG 3 cut(s) 43, 304, 465
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 1 cut(s) 608
TaqI TCGA 3 cut(s) 24, 155, 228
TasI AATT 1 cut(s) 71
TatI WGTACW 1 cut(s) 561
TauI GCSGC 3 cut(s) 261, 288, 357
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 2 cut(s) 343, 652
Tsp45I GTSAC 2 cut(s) 343, 652
TspDTI ATGAA 3 cut(s) 91, 506, 533
TspRI CASTG 1 cut(s) 438
Van91I CCANNNNNTGG 1 cut(s) 486
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.