Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004077.1

Orthogroup ID

OG0002037

Physical Location & Seq

Genomic Coordinates Reverse (-)

27461 .. 28283

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004077.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgggactgatttcaaacaagattcataggagcaacctccagccaggagatcacatctacagcttcagaaaatggaagtcatactcccaccatggaatatttgtggaggccgataaggtgatccactacaccaaaaccagaaaagaggaaccagcaaataaactgagacgaaggcctgcttgcaaaaaatgtggtttcgaccgaaaagttcatcgaggagtggtcatatcttgccttgattgctttctttcaggctacgagctttatcggtttgattatgaagtcccctatcaccatttcctcttcaagaggtcaggaacttgcagcaccggaagctgtgatgaacctgctgcagttataagccgtgccacggccatgctcaacagccaagatggttttggtgattacaaccttctcgaaaacaattgcgaatgctttgcgatttactgcaaaacagggaagcatatgagcgagcagtcatgttctgccaaacttactattagagctgttgcccaagctatcttggatcaaaactctggtaggcttcttgaagatgtgagagttcatgacccggacaattacatgaacctgaaggagaagattgacaagttgattccgttgccgttaaacgaaatcattgccattctcggaaagcttaatgaaaatgaggaagacgttgaggaattagagacaatggagaagtcggatgacttggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

239

Amino Acids

27.37

Weight (kDa)

6.55

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002037)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00790 FvH4_7g33470 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520 FvH4_7g33520
malus_domestica	MD01G1232800.v1.1 MD07G1305200.v1.1
prunus_persica	Prupe.6G174600_v2.0.a1 Prupe.6G175500_v2.0.a1 Prupe.6G175600_v2.0.a1
pyrus_communis	pycom01g24120 pycom07g24650
rosa_chinensis	RchiOBHm_Chr1g0383441 RchiOBHm_Chr1g0383561 RchiOBHm_Chr1g0383641 RchiOBHm_Chr1g0383731 RchiOBHm_Chr6g0251191
rosa_laevigata	RLG00000015475 RLG00000026100
rosa_multiflora	Rmu_co8276961.1_g000001 Rmu_sc0004077.1_g000010 Rmu_sc0012471.1_g000014 Rmu_sc0012471.1_g000024
rosa_roxburghii	Rroxscaffold_4G00277260 Rroxscaffold_4G00277270 Rroxscaffold_7G00216940
rosa_rugosa	Rorug01G0442000 Rorug05G0500600
rosa_samantha	Rh1AG467500 Rh1AG467700 Rh1BG424700 Rh1BG425100 Rh1CG437800 Rh1CG438000 Rh1DG457500 Rh1DG457900 Rh6AG010000 Rh6BG002000 Rh6CG007100 Rh6DG007600
rosa_wichuraiana	Rw1G040470 Rw1G040490 Rw6G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	115, 534
AcoI	YGGCCR	1 cut(s)	372
AcuI	CTGAAG	2 cut(s)	49, 611
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	15, 307, 551
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	6 cut(s)	63, 262, 336, 506, 518, 655
AluI	AGCT	6 cut(s)	63, 262, 336, 506, 518, 655
Alw26I	GTCTC	2 cut(s)	160, 683
AlwI	GGATC	2 cut(s)	115, 534
AoxI	GGCC	3 cut(s)	108, 173, 372
ApeKI	GCWGC	2 cut(s)	324, 350
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	130, 284, 413
BbsI	GAAGAC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	336, 337
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	3 cut(s)	348, 387, 607
BcgI	CGANNNNNNTGC	4 cut(s)	419, 453, 620, 654
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	160, 683
BfmI	CTRYAG	2 cut(s)	58, 351
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	325, 351
BlsI	GCNGC	2 cut(s)	326, 352
Bme1390I	CCNGG	2 cut(s)	45, 572
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	45, 572
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	91, 369
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	91, 369
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	336, 337
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	110, 175, 374
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	330, 572
BslFI	GGGAC	2 cut(s)	18, 269
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	160, 683
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	18, 269
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	110, 175, 374
Bsp143I	GATC	3 cut(s)	49, 120, 526
Bsp19I	CCATGG	1 cut(s)	91
BspANI	GGCC	3 cut(s)	110, 175, 374
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	115, 534
BsrDI	GCAATG	1 cut(s)	636
BssECI	CCNNGG	2 cut(s)	91, 369
BssMI	GATC	3 cut(s)	49, 120, 526
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	177, 181, 473
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	91, 369
BstF5I	GGATG	1 cut(s)	712
BstKTI	GATC	3 cut(s)	52, 123, 529
BstMAI	GTCTC	2 cut(s)	160, 683
BstMBI	GATC	3 cut(s)	49, 120, 526
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 333
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	43, 570
BstSFI	CTRYAG	2 cut(s)	58, 351
BstV1I	GCAGC	2 cut(s)	336, 337
BstV2I	GAAGAC	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	110, 175, 374
BtgI	CCRYGG	2 cut(s)	91, 369
BtsCI	GGATG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	177, 181, 473
CciI	TCATGA	1 cut(s)	565
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	5 cut(s)	92, 376, 480, 566, 583
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	3 cut(s)	51, 122, 528
DpnII	GATC	3 cut(s)	49, 120, 526
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	91
Eco147I	AGGCCT	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	49, 611
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	5 cut(s)	95, 379, 483, 569, 586
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FaqI	GGGAC	2 cut(s)	18, 269
FatI	CATG	5 cut(s)	91, 375, 479, 565, 582
FauNDI	CATATG	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	325, 351
Fsp4HI	GCNGC	2 cut(s)	325, 351
GluI	GCNGC	2 cut(s)	325, 351
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	110, 175, 374
HapII	CCGG	2 cut(s)	330, 572
Hin1II	CATG	5 cut(s)	95, 379, 483, 569, 586
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	2 cut(s)	22, 613
HpaII	CCGG	2 cut(s)	330, 572
HphI	GGTGA	3 cut(s)	130, 284, 413
Hpy188I	TCNGA	3 cut(s)	68, 650, 706
Hpy188III	TCNNGA	5 cut(s)	307, 315, 416, 548, 566
HpyAV	CCTTC	3 cut(s)	165, 422, 586
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	4 cut(s)	183, 324, 353, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 333
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	5 cut(s)	95, 379, 483, 569, 586
Kzo9I	GATC	3 cut(s)	49, 120, 526
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	2 cut(s)	336, 337
MaeII	ACGT	1 cut(s)	675
MalI	GATC	3 cut(s)	51, 122, 528
MboI	GATC	3 cut(s)	49, 120, 526
MboII	GAAGA	4 cut(s)	295, 563, 610, 683
MfeI	CAATTG	1 cut(s)	424
MluCI	AATT	3 cut(s)	424, 577, 683
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	8 cut(s)	47, 100, 139, 209, 303, 311, 661, 673
MseI	TTAA	3 cut(s)	626, 657, 718
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	2 cut(s)	330, 572
MspR9I	CCNGG	2 cut(s)	45, 572
MunI	CAATTG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	240, 333
NciI	CCSGG	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	91
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	3 cut(s)	49, 120, 526
NlaIII	CATG	5 cut(s)	95, 379, 483, 569, 586
NlaIV	GGNNCC	1 cut(s)	150
PagI	TCATGA	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	175
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	22, 613
PkrI	GCNGC	2 cut(s)	326, 352
PsiI	TTATAA	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	3 cut(s)	626, 657, 718
SatI	GCNGC	2 cut(s)	325, 351
Sau3AI	GATC	3 cut(s)	49, 120, 526
ScrFI	CCNGG	2 cut(s)	45, 572
SfcI	CTRYAG	2 cut(s)	58, 351
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	424, 577, 683
SseBI	AGGCCT	1 cut(s)	175
SspI	AATATT	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	43, 570
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	3 cut(s)	198, 214, 417
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	424, 577, 683
TfiI	GAWTC	2 cut(s)	22, 613
Tru1I	TTAA	3 cut(s)	626, 657, 718
Tru9I	TTAA	3 cut(s)	626, 657, 718
TseI	GCWGC	2 cut(s)	324, 350
TspDTI	ATGAA	7 cut(s)	14, 200, 294, 357, 554, 599, 675
TspGWI	ACGGA	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.