Rorug01G0442000

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002037
Physical Location & Seq
Forward (+)
53949566 .. 53951019
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0442000.1

Sequence Viewer

Length: 867 bp
ATGGGGTGTAAGTCATCAGATAGTCCTAAGCCAAAGCACAGAAAGGGATTATGGTCACCTGAAGAAGACCAAAGGCTGAGAAACTACATTCTCAAACATGGCCATGGCTACTGGAGTTCTGTCCCCATAAACGCCGGTTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATAAATTACTTAAGGCCAGGGTTAAAGAGAGGGACATTTACTAAACAAGAGGAGGAGACAATCCTAACCCTTCATCACATGTTAGGCAACAAGTGGTCTCAGATTGCACAACATTTGCCTGGAAGGACAGACAATGAGATAAAAAACTTCTGGCATTCTTATTTGAAGAAGAAAGTGGCCAAAGATGATGAAGATCAAGATCAAATGGAACTAGCTCAAAGCAAGTCTCAGTACACAAGTACTTCAAGCTCAGATCATAACTTAGATCAGCCTTCACCATGTTCTGAAAAGCTCACAAGCACCCAAATTCCAAGTTACAATGAATCTCCAATATTAGTTCCACAGATTTATCATCAAAGTCAAAGACCTAGCCCCTTGCCAAAGATTTTGTTTGCTGAGTGGCTTTCACTAGACCATGTTCAAGGGGGTAGCATTGGAAACAATACTGGCATTGATCAACATGACTATAATCCGCGAGCAGATCATGGGCTTGGACACAGTTACTCATTCAATAATGAGGCAACATTTGGCAGTAGTGGCTTCCATCATGGTCCGGCTACACATGAGATAATGAACTCACAATTTAGATATGATCCTCAGGATCAGATTCCAGGAACTGGATTTGCTGATTTTATATCTGGGGGTGATTTATGTAGTGATTTTACCTTGCATAATGATGTGATGTATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

288

Amino Acids

32.7

Weight (kDa)

6.62

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 5.3e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 9.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 113 2.7e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 4.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 791
AccII CGCG 1 cut(s) 649
AciI CCGC 1 cut(s) 647
AclWI GGATC 2 cut(s) 761, 783
AcoI YGGCCR 2 cut(s) 100, 351
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 407, 415
AfiI CCNNNNNNNGG 1 cut(s) 791
AflII CTTAAG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 4 cut(s) 340, 420, 596, 685
AjnI CCWGG 3 cut(s) 190, 292, 784
AluBI AGCT 4 cut(s) 159, 389, 423, 466
AluI AGCT 4 cut(s) 159, 389, 423, 466
Alw26I GTCTC 3 cut(s) 224, 276, 405
AlwI GGATC 2 cut(s) 761, 783
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 3 cut(s) 100, 188, 351
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 48, 441, 830
AvaII GGWCC 1 cut(s) 725
AxyI CCTNAGG 1 cut(s) 771
BalI TGGCCA 2 cut(s) 102, 353
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 726
BciT130I CCWGG 3 cut(s) 192, 294, 786
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 3 cut(s) 224, 276, 405
BfaI CTAG 3 cut(s) 386, 543, 584
BfmI CTRYAG 1 cut(s) 160
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 192, 294, 786
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 725
BmrFI CCNGG 3 cut(s) 192, 294, 786
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 27
BsaBI GATNNNNATC 2 cut(s) 366, 372
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 103, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 791
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 116, 625, 796
Bse21I CCTNAGG 1 cut(s) 771
Bse8I GATNNNNATC 2 cut(s) 366, 372
BseBI CCWGG 3 cut(s) 192, 294, 786
BseDI CCNNGG 2 cut(s) 103, 191
BseJI GATNNNNATC 2 cut(s) 366, 372
BseLI CCNNNNNNNGG 1 cut(s) 791
BseMII CTCAG 6 cut(s) 68, 287, 416, 438, 561, 785
BseNI ACTGG 3 cut(s) 116, 625, 796
BseRI GAGGAG 2 cut(s) 239, 242
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 3 cut(s) 102, 190, 353
BsiSI CCGG 2 cut(s) 135, 728
BslFI GGGAC 2 cut(s) 107, 220
BslI CCNNNNNNNGG 1 cut(s) 791
BsmAI GTCTC 3 cut(s) 224, 276, 405
BsmFI GGGAC 2 cut(s) 107, 220
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 3 cut(s) 102, 190, 353
Bso31I GGTCTC 1 cut(s) 276
Bsp143I GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 647
BspANI GGCC 3 cut(s) 102, 190, 353
BspCNI CTCAG 6 cut(s) 69, 286, 415, 437, 562, 784
BspFNI CGCG 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 164
BspPI GGATC 2 cut(s) 761, 783
BspTI CTTAAG 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 3 cut(s) 116, 625, 796
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 103, 191
BssMI GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 3 cut(s) 192, 294, 786
Bst4CI ACNGT 1 cut(s) 674
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 8 cut(s) 27, 77, 273, 402, 424, 436, 570, 771
BstDSI CCRYGG 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 54
BstFNI CGCG 1 cut(s) 649
BstKTI GATC 8 cut(s) 370, 376, 430, 442, 631, 658, 769, 778
BstMAI GTCTC 3 cut(s) 224, 276, 405
BstMBI GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
BstMWI GCNNNNNNNGC 1 cut(s) 711
BstNI CCWGG 3 cut(s) 192, 294, 786
BstNSI RCATGY 1 cut(s) 256
BstPI GGTNACC 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 190, 292, 784
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 771
BsuRI GGCC 3 cut(s) 102, 190, 353
BtgI CCRYGG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 651
CaiI CAGNNNCTG 1 cut(s) 791
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 2 cut(s) 406, 414
CviAII CATG 9 cut(s) 98, 104, 253, 453, 590, 635, 659, 722, 737
CviQI GTAC 2 cut(s) 406, 414
DdeI CTNAG 8 cut(s) 27, 77, 273, 402, 424, 436, 570, 771
DpnI GATC 8 cut(s) 369, 375, 429, 441, 630, 657, 768, 777
DpnII GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
EaeI YGGCCR 2 cut(s) 100, 351
Eco130I CCWWGG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 54
EcoRII CCWGG 3 cut(s) 190, 292, 784
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 9 cut(s) 101, 107, 256, 456, 593, 638, 662, 725, 740
FaqI GGGAC 2 cut(s) 107, 220
FatI CATG 9 cut(s) 97, 103, 252, 452, 589, 634, 658, 721, 736
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 3 cut(s) 386, 543, 584
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 3 cut(s) 102, 190, 353
HapII CCGG 2 cut(s) 135, 728
Hin1II CATG 9 cut(s) 101, 107, 256, 456, 593, 638, 662, 725, 740
HinfI GANTC 2 cut(s) 497, 781
HpaII CCGG 2 cut(s) 135, 728
HphI GGTGA 3 cut(s) 48, 441, 830
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 5 cut(s) 19, 276, 427, 460, 780
Hpy188III TCNNGA 2 cut(s) 371, 773
Hpy8I GTNNAC 1 cut(s) 408
HpyAV CCTTC 3 cut(s) 254, 291, 456
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4V TGCA 4 cut(s) 142, 162, 281, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 711
HpyF3I CTNAG 8 cut(s) 27, 77, 273, 402, 424, 436, 570, 771
Hsp92II CATG 9 cut(s) 101, 107, 256, 456, 593, 638, 662, 725, 740
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 3 cut(s) 386, 543, 584
MaeIII GTNAC 3 cut(s) 54, 488, 674
MalI GATC 8 cut(s) 369, 375, 429, 441, 630, 657, 768, 777
MboI GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
MboII GAAGA 5 cut(s) 74, 77, 352, 355, 377
MlsI TGGCCA 2 cut(s) 102, 353
MluCI AATT 3 cut(s) 178, 480, 755
MluNI TGGCCA 2 cut(s) 102, 353
MnlI CCTC 5 cut(s) 197, 217, 220, 685, 780
Mox20I TGGCCA 2 cut(s) 102, 353
MscI TGGCCA 2 cut(s) 102, 353
MseI TTAA 3 cut(s) 167, 185, 197
MslI CAYNNNNRTG 2 cut(s) 102, 849
Msp20I TGGCCA 2 cut(s) 102, 353
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 2 cut(s) 135, 728
MspR9I CCNGG 3 cut(s) 192, 294, 786
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 3 cut(s) 192, 294, 786
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 1 cut(s) 711
NcoI CCATGG 1 cut(s) 103
NdeII GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
NlaIII CATG 9 cut(s) 101, 107, 256, 456, 593, 638, 662, 725, 740
NmuCI GTSAC 1 cut(s) 54
NspI RCATGY 1 cut(s) 256
PciI ACATGT 1 cut(s) 252
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 497, 781
PflMI CCANNNNNTGG 1 cut(s) 791
PfoI TCCNGGA 1 cut(s) 784
PkrI GCNGC 1 cut(s) 161
PscI ACATGT 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 190, 292, 784
PspEI GGTNACC 1 cut(s) 54
PspGI CCWGG 3 cut(s) 190, 292, 784
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 407, 415
RsaNI GTAC 2 cut(s) 406, 414
RseI CAYNNNNRTG 2 cut(s) 102, 849
SaqAI TTAA 3 cut(s) 167, 185, 197
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 8 cut(s) 367, 373, 427, 439, 628, 655, 766, 775
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 192, 294, 786
SetI ASST 8 cut(s) 61, 161, 173, 391, 425, 468, 544, 842
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 2 cut(s) 102, 849
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 3 cut(s) 178, 480, 755
SsiI CCGC 1 cut(s) 647
SspI AATATT 1 cut(s) 507
SspMI CTAG 3 cut(s) 386, 543, 584
StyD4I CCNGG 3 cut(s) 190, 292, 784
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 674
TasI AATT 3 cut(s) 178, 480, 755
TatI WGTACW 2 cut(s) 405, 413
TfiI GAWTC 2 cut(s) 497, 781
Tru1I TTAA 3 cut(s) 167, 185, 197
Tru9I TTAA 3 cut(s) 167, 185, 197
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 4 cut(s) 236, 378, 510, 761
Van91I CCANNNNNTGG 1 cut(s) 791
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 480
XceI RCATGY 1 cut(s) 256
XspI CTAG 3 cut(s) 386, 543, 584
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.