FvH4_7g33470

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002037
Physical Location & Seq
Forward (+)
23809479 .. 23810532
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33470.t1

Sequence Viewer

Length: 693 bp
ATGGAGGATCTTGTAAACAACAAGATCGATAGAGAGAGCCTCAAACCTGGAGATCACATCTATGCTTACAGACTTGCGGGGACCTATTCCCACCATGGTATCTACATTGGAGGAGATAGAGTAATCCACTATAACAGAACACGAGATGCAAACAAATGGAATCGAGCGGAGCCATGCAGAAACTGCGAGCTCGACAGAAACCACCTCCGAGGAGTTGTCAAGTCTTGCGTCGACTGCTTTCTCCAAGGCCACGATCTCCGCCGCTTCCAATACGGCGTTAAGGTCGTGCGCTACCTCACCAGCCGGCACGGCACCTGCACCACGGGCCGTGCTGACCCACCAGAAGTCGCCATCCGCCGTGCCAATGATCACTTAGACGGTCATGGGTTCGGGGACTACGACTTGTTTGAGAACAACTGCGAGGTGTTTGCGGTGTTCTGCAAGACGGAGAAAGCCGTGAGCAGCCAGGCGTGGGCTGCCAAGTCGGTGTTGAAGGCCGGTGTGAAGATATGGATTGGCAGACTTCTTCAAGATGTGTTGGTTCACCAAGGCCAGGAAAAGCACGACAAGACGAAGCAGAGGATTGATAGCGCGCTCACTAGTATCTCCTCGCTTAAAGAGTTAATTGCCAATCTTCAGAAGAATCAGGCCGCGGATTCAGGCGAGGAGGTCATGGAGATCACCGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

231

Amino Acids

25.98

Weight (kDa)

8.43

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 152 7.1e-24 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 231
AccII CGCG 2 cut(s) 593, 653
AciI CCGC 8 cut(s) 77, 167, 259, 262, 355, 431, 651, 653
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 472, 553
AgeI ACCGGT 1 cut(s) 683
AgsI TTSAA 2 cut(s) 493, 530
AhlI ACTAGT 1 cut(s) 599
AjnI CCWGG 3 cut(s) 46, 465, 552
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 183
AoxI GGCC 5 cut(s) 247, 325, 495, 550, 648
ApeKI GCWGC 2 cut(s) 462, 476
AsiGI ACCGGT 1 cut(s) 683
AspLEI GCGC 3 cut(s) 291, 593, 595
AspS9I GGNCC 2 cut(s) 81, 325
AsuHPI GGTGA 3 cut(s) 289, 536, 673
AvaII GGWCC 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 463, 474
BccI CCATC 1 cut(s) 359
BceAI ACGGC 5 cut(s) 289, 312, 325, 342, 440
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 48, 467, 554
BclI TGATCA 1 cut(s) 367
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 4 cut(s) 262, 463, 477, 651
BlsI GCNGC 4 cut(s) 263, 464, 478, 652
Bme1390I CCNGG 3 cut(s) 48, 467, 554
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 81, 325
BmiI GGNNCC 3 cut(s) 82, 171, 313
BmrFI CCNGG 3 cut(s) 48, 467, 554
BmsI GCATC 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpmI CTGGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 27
BsaJI CCNNGG 6 cut(s) 94, 208, 244, 321, 547, 651
BsaWI WCCGGW 1 cut(s) 683
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 553
Bse118I RCCGGY 3 cut(s) 303, 497, 683
BseBI CCWGG 3 cut(s) 48, 467, 554
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 6 cut(s) 94, 208, 244, 321, 547, 651
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 472, 553
BsePI GCGCGC 1 cut(s) 591
BseRI GAGGAG 4 cut(s) 126, 225, 598, 680
BseXI GCAGC 2 cut(s) 463, 474
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 2 cut(s) 593, 653
BshFI GGCC 5 cut(s) 249, 327, 497, 552, 650
BshNI GGYRCC 1 cut(s) 311
BshTI ACCGGT 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 3 cut(s) 304, 498, 684
BslFI GGGAC 2 cut(s) 94, 407
BslI CCNNNNNNNGG 2 cut(s) 472, 553
BsmFI GGGAC 2 cut(s) 94, 407
BsnI GGCC 5 cut(s) 249, 327, 497, 552, 650
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 6 cut(s) 7, 24, 52, 253, 367, 678
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 8 cut(s) 77, 167, 259, 262, 355, 431, 651, 653
BspANI GGCC 5 cut(s) 249, 327, 497, 552, 650
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 2 cut(s) 593, 653
BspLI GGNNCC 3 cut(s) 82, 171, 313
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 167
BsrFI RCCGGY 3 cut(s) 303, 497, 683
BssAI RCCGGY 3 cut(s) 303, 497, 683
BssECI CCNNGG 6 cut(s) 94, 208, 244, 321, 547, 651
BssHII GCGCGC 1 cut(s) 591
BssMI GATC 6 cut(s) 7, 24, 52, 253, 367, 678
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 3 cut(s) 94, 244, 547
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 3 cut(s) 48, 467, 554
Bst4CI ACNGT 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 188, 305, 593
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 3 cut(s) 94, 321, 651
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 2 cut(s) 593, 653
BstHHI GCGC 3 cut(s) 291, 593, 595
BstKTI GATC 6 cut(s) 10, 27, 55, 256, 370, 681
BstMBI GATC 6 cut(s) 7, 24, 52, 253, 367, 678
BstMWI GCNNNNNNNGC 5 cut(s) 183, 234, 309, 324, 476
BstNI CCWGG 3 cut(s) 48, 467, 554
BstSCI CCNGG 3 cut(s) 46, 465, 552
BstUI CGCG 2 cut(s) 593, 653
BstV1I GCAGC 2 cut(s) 463, 474
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 5 cut(s) 249, 327, 497, 552, 650
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 3 cut(s) 94, 321, 651
BtsCI GGATG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 188, 305, 593
CaiI CAGNNNCTG 1 cut(s) 183
CfoI GCGC 3 cut(s) 291, 593, 595
Cfr10I RCCGGY 3 cut(s) 303, 497, 683
Cfr13I GGNCC 2 cut(s) 81, 325
Cfr42I CCGCGG 1 cut(s) 654
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 683
CviAII CATG 5 cut(s) 95, 174, 383, 673, 690
DdeI CTNAG 1 cut(s) 373
DpnI GATC 6 cut(s) 9, 26, 54, 255, 369, 680
DpnII GATC 6 cut(s) 7, 24, 52, 253, 367, 678
EciI GGCGGA 2 cut(s) 248, 344
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 94, 244, 547
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 3 cut(s) 46, 465, 552
EcoT14I CCWWGG 3 cut(s) 94, 244, 547
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 3 cut(s) 94, 244, 547
FaeI CATG 5 cut(s) 98, 177, 386, 676, 693
FaiI YATR 8 cut(s) 63, 96, 132, 175, 384, 511, 674, 691
FaqI GGGAC 2 cut(s) 94, 407
FatI CATG 5 cut(s) 94, 173, 382, 672, 689
FauI CCCGC 1 cut(s) 70
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 262, 463, 477, 651
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 262, 463, 477, 651
FspBI CTAG 1 cut(s) 600
GlaI GCGC 3 cut(s) 290, 592, 594
GluI GCNGC 4 cut(s) 262, 463, 477, 651
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 5 cut(s) 249, 327, 497, 552, 650
HapII CCGG 3 cut(s) 304, 498, 684
HgaI GACGC 1 cut(s) 217
HhaI GCGC 3 cut(s) 291, 593, 595
Hin1II CATG 5 cut(s) 98, 177, 386, 676, 693
Hin6I GCGC 3 cut(s) 289, 591, 593
HinP1I GCGC 3 cut(s) 289, 591, 593
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 160, 643, 656
HpaII CCGG 3 cut(s) 304, 498, 684
HphI GGTGA 3 cut(s) 289, 536, 673
Hpy166II GTNNAC 3 cut(s) 16, 232, 544
Hpy188I TCNGA 2 cut(s) 209, 639
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 3 cut(s) 16, 232, 544
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 5 cut(s) 149, 177, 318, 441, 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 234, 309, 324, 476
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 5 cut(s) 98, 177, 386, 676, 693
HspAI GCGC 3 cut(s) 289, 591, 593
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 367
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 6 cut(s) 7, 24, 52, 253, 367, 678
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 463, 474
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 600
MalI GATC 6 cut(s) 9, 26, 54, 255, 369, 680
MbiI CCGCTC 1 cut(s) 167
MboI GATC 6 cut(s) 7, 24, 52, 253, 367, 678
MboII GAAGA 4 cut(s) 517, 518, 626, 652
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 624
MroNI GCCGGC 1 cut(s) 303
MseI TTAA 3 cut(s) 279, 615, 623
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 3 cut(s) 304, 498, 684
MspR9I CCNGG 3 cut(s) 48, 467, 554
MvaI CCWGG 3 cut(s) 48, 467, 554
MvnI CGCG 2 cut(s) 593, 653
MwoI GCNNNNNNNGC 5 cut(s) 183, 234, 309, 324, 476
NaeI GCCGGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 94
NdeII GATC 6 cut(s) 7, 24, 52, 253, 367, 678
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 5 cut(s) 98, 177, 386, 676, 693
NlaIV GGNNCC 3 cut(s) 82, 171, 313
PaqCI CACCTGC 1 cut(s) 323
PauI GCGCGC 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdiI GCCGGC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 160, 643, 656
PinAI ACCGGT 1 cut(s) 683
PkrI GCNGC 4 cut(s) 263, 464, 478, 652
PpuMI RGGWCCY 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 81
Psp6I CCWGG 3 cut(s) 46, 465, 552
PspGI CCWGG 3 cut(s) 46, 465, 552
PspN4I GGNNCC 3 cut(s) 82, 171, 313
PspPI GGNCC 2 cut(s) 81, 325
PspPPI RGGWCCY 1 cut(s) 81
PstNI CAGNNNCTG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 7
PteI GCGCGC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 192
SacII CCGCGG 1 cut(s) 654
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 279, 615, 623
SatI GCNGC 4 cut(s) 262, 463, 477, 651
Sau3AI GATC 6 cut(s) 7, 24, 52, 253, 367, 678
Sau96I GGNCC 2 cut(s) 81, 325
ScrFI CCNGG 3 cut(s) 48, 467, 554
SduI GDGCHC 1 cut(s) 192
SetI ASST 9 cut(s) 49, 86, 192, 207, 285, 297, 317, 426, 672
SfaNI GCATC 1 cut(s) 136
Sfr303I CCGCGG 1 cut(s) 654
SgrAI CRCCGGYG 1 cut(s) 683
SgrBI CCGCGG 1 cut(s) 654
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 1 cut(s) 624
SsiI CCGC 8 cut(s) 77, 167, 259, 262, 355, 431, 651, 653
SspMI CTAG 1 cut(s) 600
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 46, 465, 552
StyI CCWWGG 3 cut(s) 94, 244, 547
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 4 cut(s) 27, 163, 192, 231
TasI AATT 1 cut(s) 624
TauI GCSGC 2 cut(s) 264, 653
TfiI GAWTC 3 cut(s) 160, 643, 656
Tru1I TTAA 3 cut(s) 279, 615, 623
Tru9I TTAA 3 cut(s) 279, 615, 623
TseI GCWGC 2 cut(s) 462, 476
TspGWI ACGGA 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.