Rh1AG467500

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002037
Physical Location & Seq
Forward (+)
68159599 .. 68160049
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG467500.1

Sequence Viewer

Length: 357 bp
ATGGAGTATATTACAAACAAGATCGATAGAGAGAGCCTCAAGCCTGGAGATCACATCTATGCTTACAGAAAATTGCACTCCTACTCTCACCATGGTATCTTCATTGGGGGAGATAGAGTGATTCACTATAACAAAACACAAGAAGGAAACACATCGAAACGAGTCAAGCAGTACTGCAAAAACTGCTGGATAGACGAAAACCCCCTTCGAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAAAGGCTCAAACGCCACACCCTCCGCCGCTTCCAATACGCCGTGGGTAAAGGCCGCTACCTCCTCAGCTGGCCAGGCACATGCACTACTGATCCTGCTGAACAGCCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

118

Amino Acids

13.19

Weight (kDa)

9.37

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 93 3.1e-12 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AciI CCGC 3 cut(s) 267, 270, 297
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 313
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 209
AjnI CCWGG 2 cut(s) 43, 315
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
AlwI GGATC 1 cut(s) 328
AoxI GGCC 2 cut(s) 294, 313
AsuHPI GGTGA 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 1 cut(s) 315
BbvCI CCTCAGC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 2 cut(s) 45, 317
BisI GCNGC 2 cut(s) 270, 297
BlsI GCNGC 2 cut(s) 271, 298
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 45, 317
BmrFI CCNGG 2 cut(s) 45, 317
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 91, 284
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 209
BseBI CCWGG 2 cut(s) 45, 317
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 91, 284
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 321
BseRI GAGGAG 2 cut(s) 225, 295
BshFI GGCC 2 cut(s) 296, 315
BshVI ATCGAT 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 2 cut(s) 296, 315
Bsp143I GATC 3 cut(s) 21, 49, 333
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 3 cut(s) 267, 270, 297
BspANI GGCC 2 cut(s) 296, 315
BspCNI CTCAG 1 cut(s) 320
BspDI ATCGAT 1 cut(s) 24
BspPI GGATC 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 91, 284
BssMI GATC 3 cut(s) 21, 49, 333
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 45, 317
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 307
BstDSI CCRYGG 2 cut(s) 91, 284
BstKTI GATC 3 cut(s) 24, 52, 336
BstMBI GATC 3 cut(s) 21, 49, 333
BstMWI GCNNNNNNNGC 3 cut(s) 183, 234, 317
BstNI CCWGG 2 cut(s) 45, 317
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 43, 315
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 296, 315
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 91, 284
Cac8I GCNNGC 1 cut(s) 313
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 172
CviAII CATG 2 cut(s) 92, 323
CviJI RGCY 7 cut(s) 36, 43, 249, 296, 311, 315, 348
CviKI_1 RGCY 7 cut(s) 36, 43, 249, 296, 311, 315, 348
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 307
DpnI GATC 3 cut(s) 23, 51, 335
DpnII GATC 3 cut(s) 21, 49, 333
EaeI YGGCCR 1 cut(s) 313
EciI GGCGGA 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 43, 315
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 95, 326
FaiI YATR 5 cut(s) 9, 60, 93, 129, 324
FatI CATG 2 cut(s) 91, 322
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 270, 297
Fsp4HI GCNGC 2 cut(s) 270, 297
GluI GCNGC 2 cut(s) 270, 297
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 2 cut(s) 296, 315
HgaI GACGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 95, 326
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 121, 162, 213
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 137, 215
HpyCH4V TGCA 3 cut(s) 76, 177, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 234, 317
HpyF3I CTNAG 1 cut(s) 307
Hsp92II CATG 2 cut(s) 95, 326
Kzo9I GATC 3 cut(s) 21, 49, 333
LpnPI CCDG 8 cut(s) 30, 57, 172, 238, 297, 302, 329, 350
MalI GATC 3 cut(s) 23, 51, 335
MboI GATC 3 cut(s) 21, 49, 333
MboII GAAGA 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 2 cut(s) 171, 222
MnlI CCTC 6 cut(s) 47, 203, 251, 274, 313, 316
Mox20I TGGCCA 1 cut(s) 315
MscI TGGCCA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 45, 317
MvaI CCWGG 2 cut(s) 45, 317
MwoI GCNNNNNNNGC 3 cut(s) 183, 234, 317
NcoI CCATGG 1 cut(s) 91
NdeII GATC 3 cut(s) 21, 49, 333
NlaIII CATG 2 cut(s) 95, 326
NspI RCATGY 1 cut(s) 326
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 271, 298
PleI GAGTC 2 cut(s) 170, 221
PpsI GAGTC 2 cut(s) 170, 221
Psp6I CCWGG 2 cut(s) 43, 315
PspGI CCWGG 2 cut(s) 43, 315
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 230
SatI GCNGC 2 cut(s) 270, 297
Sau3AI GATC 3 cut(s) 21, 49, 333
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 171, 222
ScrFI CCNGG 2 cut(s) 45, 317
SetI ASST 2 cut(s) 305, 313
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 71
SsiI CCGC 3 cut(s) 267, 270, 297
StyD4I CCNGG 2 cut(s) 43, 315
StyI CCWWGG 1 cut(s) 91
TaqI TCGA 4 cut(s) 24, 155, 208, 231
TasI AATT 1 cut(s) 71
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 272, 299
TfiI GAWTC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 91
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.