Rh1BG424700

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002037
Physical Location & Seq
Forward (+)
54336361 .. 54337223
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG424700.1

Sequence Viewer

Length: 774 bp
ATGGCCAGCTCTCGCTCAAGTAGTTTGACAGTAAGGCAGCGTTTTATAAACAAGATCGACAAAGAGAGCCTCGAGCGTGGAGATCATATTTATGCTTACAGAAAGGGTGGCTTGTACTCCCACCATGGTATCTTCATTGGGGAAGATAGAGTGATTCACTTCGTCAGAACAAATGAGGGAAACACATCGAGACGAGTCGAGCCATGCCAAAAGTGCGGGGTTGACAAAAATCACCTCCGAGGAGTCGTCAAGTCCTGCGTCGACTGCTTCCTCAATGGCCACAGCCTCCGCCGCTACCGATACAGTGTAAGTCGCCGCCGCTTTGCTACCAACCTTGGAGGCACCTGCACCACCGGCGATGCTGACCCCCCAGATGTGACCATCAGCCGCGCCGAAGACCTGTTTAACACGAAAGATTTTGGGGACTATGACTTGCTTAAGAACAACTGCGAGACCTTTGCGGTGTTCTGCAAGACGGGGAAGCGCAGGAGCGACCAGGCGGACACGGGTATATTGCTGATCGAGGCGGCGGTTGGGGTGGCGATTAAGAGGCTTTATCATGATGTGGAGACTCATCACGGCGAGGACAAGATCAAAGAGTTAAAGCAGGCGATTGACAGGTTTTTTAGTGGTCTAGATCTGTCGATTCAACACGGCAGGGAAAAGCTCAACAAGTTCAAGCAGATGATTGATGGGTGGCTCGCTAATAGTTCGTCGCCTGAAGAGATACGTGACGGATTAAAAAATCTTGAAAAGGATCAGGAGGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

257

Amino Acids

29.2

Weight (kDa)

8.77

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 23 - 162 4.9e-25 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AarI CACCTGC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 390
AclWI GGATC 1 cut(s) 765
AcoI YGGCCR 2 cut(s) 3, 277
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 1 cut(s) 116
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 3 cut(s) 650, 679, 752
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 2 cut(s) 9, 667
AluI AGCT 2 cut(s) 9, 667
Alw26I GTCTC 3 cut(s) 184, 446, 563
AlwI GGATC 1 cut(s) 765
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 3, 277
ApeKI GCWGC 1 cut(s) 37
AspLEI GCGC 2 cut(s) 392, 486
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 71
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BalI TGGCCA 2 cut(s) 5, 279
BanI GGYRCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 389, 686
BceAI ACGGC 2 cut(s) 595, 670
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 1 cut(s) 497
BcoDI GTCTC 3 cut(s) 184, 446, 563
BfaI CTAG 1 cut(s) 635
BfrI CTTAAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 353
BglII AGATCT 1 cut(s) 637
BisI GCNGC 6 cut(s) 38, 292, 316, 319, 388, 528
BlsI GCNGC 6 cut(s) 39, 293, 317, 320, 389, 529
Bme1390I CCNGG 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 731
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 124, 238, 334
Bse118I RCCGGY 1 cut(s) 353
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 3 cut(s) 124, 238, 334
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 2 cut(s) 5, 279
BshNI GGYRCC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 437
BsmAI GTCTC 3 cut(s) 184, 446, 563
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 2 cut(s) 5, 279
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 6 cut(s) 54, 82, 519, 591, 637, 757
Bsp19I CCATGG 1 cut(s) 124
BspANI GGCC 2 cut(s) 5, 279
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 124, 238, 334
BssMI GATC 6 cut(s) 54, 82, 519, 591, 637, 757
BssT1I CCWWGG 2 cut(s) 124, 334
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 2 cut(s) 31, 305
Bst6I CTCTTC 1 cut(s) 717
BstAFI CTTAAG 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 731
BstC8I GCNNGC 3 cut(s) 7, 609, 702
BstDSI CCRYGG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 2 cut(s) 392, 486
BstKTI GATC 6 cut(s) 57, 85, 522, 594, 640, 760
BstMAI GTCTC 3 cut(s) 184, 446, 563
BstMBI GATC 6 cut(s) 54, 82, 519, 591, 637, 757
BstMWI GCNNNNNNNGC 4 cut(s) 213, 264, 291, 354
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 495
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 2 cut(s) 5, 279
BtgI CCRYGG 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 7, 609, 702
CciI TCATGA 1 cut(s) 559
CfoI GCGC 2 cut(s) 392, 486
Cfr10I RCCGGY 1 cut(s) 353
CseI GACGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 125, 204, 560
CviQI GTAC 1 cut(s) 115
DpnI GATC 6 cut(s) 56, 84, 521, 593, 639, 759
DpnII GATC 6 cut(s) 54, 82, 519, 591, 637, 757
EaeI YGGCCR 2 cut(s) 3, 277
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EciI GGCGGA 2 cut(s) 278, 515
Eco130I CCWWGG 2 cut(s) 124, 334
Eco31I GGTCTC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 2 cut(s) 124, 334
ErhI CCWWGG 2 cut(s) 124, 334
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 3 cut(s) 128, 207, 563
FaiI YATR 8 cut(s) 47, 87, 93, 126, 205, 429, 512, 561
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 124, 203, 559
FauI CCCGC 1 cut(s) 209
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 6 cut(s) 38, 292, 316, 319, 388, 528
Fsp4HI GCNGC 6 cut(s) 38, 292, 316, 319, 388, 528
FspBI CTAG 1 cut(s) 635
GlaI GCGC 2 cut(s) 391, 485
GluI GCNGC 6 cut(s) 38, 292, 316, 319, 388, 528
HaeIII GGCC 2 cut(s) 5, 279
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 247
HhaI GCGC 2 cut(s) 392, 486
Hin1II CATG 3 cut(s) 128, 207, 563
Hin6I GCGC 2 cut(s) 390, 484
HinP1I GCGC 2 cut(s) 390, 484
HincII GTYRAC 2 cut(s) 223, 262
HindII GTYRAC 2 cut(s) 223, 262
HinfI GANTC 5 cut(s) 154, 195, 243, 571, 646
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 223, 262
Hpy188I TCNGA 2 cut(s) 167, 239
Hpy188III TCNNGA 5 cut(s) 189, 560, 635, 749, 761
Hpy8I GTNNAC 2 cut(s) 223, 262
Hpy99I CGWCG 2 cut(s) 263, 718
HpyCH4III ACNGT 2 cut(s) 31, 305
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 2 cut(s) 348, 471
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 264, 291, 354
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 3 cut(s) 128, 207, 563
HspAI GCGC 2 cut(s) 390, 484
Kzo9I GATC 6 cut(s) 54, 82, 519, 591, 637, 757
LmnI GCTCC 1 cut(s) 489
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 635
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 2 cut(s) 376, 731
MalI GATC 6 cut(s) 56, 84, 521, 593, 639, 759
MboI GATC 6 cut(s) 54, 82, 519, 591, 637, 757
MboII GAAGA 4 cut(s) 124, 155, 407, 734
MflI RGATCY 1 cut(s) 637
MlsI TGGCCA 2 cut(s) 5, 279
MluNI TGGCCA 2 cut(s) 5, 279
MlyI GAGTC 3 cut(s) 204, 252, 565
Mox20I TGGCCA 2 cut(s) 5, 279
MscI TGGCCA 2 cut(s) 5, 279
MseI TTAA 6 cut(s) 405, 438, 546, 602, 740, 772
MslI CAYNNNNRTG 1 cut(s) 90
Msp20I TGGCCA 2 cut(s) 5, 279
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 4 cut(s) 213, 264, 291, 354
NcoI CCATGG 1 cut(s) 124
NdeII GATC 6 cut(s) 54, 82, 519, 591, 637, 757
NlaIII CATG 3 cut(s) 128, 207, 563
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 2 cut(s) 376, 731
PaeR7I CTCGAG 1 cut(s) 71
PagI TCATGA 1 cut(s) 559
PaqCI CACCTGC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 154, 646
PkrI GCNGC 6 cut(s) 39, 293, 317, 320, 389, 529
PleI GAGTC 3 cut(s) 203, 251, 565
PpsI GAGTC 3 cut(s) 203, 251, 565
Ppu21I YACGTR 1 cut(s) 731
PsiI TTATAA 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 71
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 90
SalI GTCGAC 1 cut(s) 260
SaqAI TTAA 6 cut(s) 405, 438, 546, 602, 740, 772
SatI GCNGC 6 cut(s) 38, 292, 316, 319, 388, 528
Sau3AI GATC 6 cut(s) 54, 82, 519, 591, 637, 757
SchI GAGTC 3 cut(s) 204, 252, 565
ScrFI CCNGG 1 cut(s) 497
SetI ASST 9 cut(s) 11, 237, 336, 347, 402, 458, 623, 669, 733
SfaNI GCATC 1 cut(s) 349
Sfr274I CTCGAG 1 cut(s) 71
SgrAI CRCCGGYG 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 3 cut(s) 16, 71, 437
SmoI CTYRAG 3 cut(s) 16, 71, 437
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 2 cut(s) 124, 334
TaaI ACNGT 2 cut(s) 31, 305
TaiI ACGT 1 cut(s) 733
TaqI TCGA 7 cut(s) 57, 72, 188, 198, 261, 522, 644
TatI WGTACW 1 cut(s) 114
TauI GCSGC 5 cut(s) 294, 318, 321, 390, 530
TfiI GAWTC 2 cut(s) 154, 646
Tru1I TTAA 6 cut(s) 405, 438, 546, 602, 740, 772
Tru9I TTAA 6 cut(s) 405, 438, 546, 602, 740, 772
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 2 cut(s) 376, 731
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 2 cut(s) 376, 731
TspDTI ATGAA 1 cut(s) 124
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 437
XbaI TCTAGA 1 cut(s) 634
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.