Rh1CG438000

NC domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002037
Physical Location & Seq
Forward (+)
69248033 .. 69248867
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG438000.1

Sequence Viewer

Length: 750 bp
ATGGCTAGCTCTGGCTCAAGTAGTTTGATAGAAATGACTCTGAATCTTACAAACAAGATCGATAGAAAGAGACTCAGGCCTGGAGATCGTATTTATGCTTACAGAAAAGCGGCCATCTACGCCCACCATGGTATATTCATTGGGGGAGATAGAGTGATTCACTTTAACAGAACACAAGAAGGAAACACATCGAGACGAGGAAGCCCCTGCAGAAACTGTGGGCTTGTCAAAAATGACCTCCGAGGAGTTGTCATGTCCTGCATTGACTGTTTCCGCGACGGCCACTCCCTCCGCCGCTTCCGATACGGCGTTAGTTGGGGCCTTTACGTAATCAGCCGGCCAGGCACATGCACCACCGGCGAGGCTCCCCGTGCAGAAGAGACCATCAGCCTCGCCATTGAGGAGTTAAACAAGAAAGATTTTGGGGACTATCACGTGCTTCAGAACAACTGCGAGACCTTTGCGGTGTTCTGCACGACGGGGAACCGCAGGAGCGACCTGGCGAGCACGGCTATATCGGCGATCAAGGTGGCGATTCACAGGCTTTATAGTGATGTGAAGAGTAATCACGGCAAGGAGAAGCTCAACGAGTTAAAGCAGGCGATTGAGAACCTTTTTGGTGATGTGAAGAATCCTCACGGCGAGGAGAAGCTCAACAAGTTGAACCAGATGATTGATATCTGGGTCACTAATAGGGTGTCGCCTGAAGAGATCAGTGACGGATTAAAAAATCTTGAAAAGGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

249

Amino Acids

28.03

Weight (kDa)

9.05

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 24 - 163 6.9e-20 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 6 cut(s) 110, 274, 292, 295, 464, 487
AcoI YGGCCR 3 cut(s) 111, 280, 338
AcuI CTGAAG 2 cut(s) 425, 726
AcvI CACGTG 1 cut(s) 436
AgsI TTSAA 2 cut(s) 664, 737
AjnI CCWGG 3 cut(s) 79, 340, 498
AluBI AGCT 3 cut(s) 9, 583, 652
AluI AGCT 3 cut(s) 9, 583, 652
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 4 cut(s) 64, 187, 374, 449
AlwNI CAGNNNCTG 1 cut(s) 216
AoxI GGCC 5 cut(s) 77, 111, 280, 319, 338
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 632
AsuNHI GCTAGC 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 509
BccI CCATC 2 cut(s) 122, 392
BceAI ACGGC 5 cut(s) 295, 322, 525, 586, 655
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 3 cut(s) 81, 342, 500
BcoDI GTCTC 4 cut(s) 64, 187, 374, 449
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 342
BisI GCNGC 2 cut(s) 111, 295
BlsI GCNGC 2 cut(s) 112, 296
Bme1390I CCNGG 3 cut(s) 81, 342, 500
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 3 cut(s) 320, 366, 485
BmrFI CCNGG 3 cut(s) 81, 342, 500
BmtI GCTAGC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 60
BsaAI YACGTR 2 cut(s) 328, 436
BsaBI GATNNNNATC 1 cut(s) 677
BsaI GGTCTC 2 cut(s) 374, 449
BsaJI CCNNGG 2 cut(s) 127, 241
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 269, 299
Bse118I RCCGGY 2 cut(s) 336, 356
Bse8I GATNNNNATC 1 cut(s) 677
BseBI CCWGG 3 cut(s) 81, 342, 500
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 127, 241
BseJI GATNNNNATC 1 cut(s) 677
BseMII CTCAG 1 cut(s) 88
BseRI GAGGAG 3 cut(s) 258, 416, 659
BsgI GTGCAG 2 cut(s) 393, 457
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 79, 113, 282, 321, 340
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 509
BsiSI CCGG 2 cut(s) 337, 357
BslFI GGGAC 1 cut(s) 440
BsmAI GTCTC 4 cut(s) 64, 187, 374, 449
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 5 cut(s) 79, 113, 282, 321, 340
Bso31I GGTCTC 2 cut(s) 374, 449
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 5 cut(s) 57, 85, 522, 711, 742
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 6 cut(s) 110, 274, 292, 295, 464, 487
BspANI GGCC 5 cut(s) 79, 113, 282, 321, 340
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 60
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 320, 366, 485
BspMAI CTGCAG 1 cut(s) 212
BspOI GCTAGC 1 cut(s) 9
BspTNI GGTCTC 2 cut(s) 374, 449
BsrFI RCCGGY 2 cut(s) 336, 356
BssAI RCCGGY 2 cut(s) 336, 356
BssECI CCNNGG 2 cut(s) 127, 241
BssMI GATC 5 cut(s) 57, 85, 522, 711, 742
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 3 cut(s) 81, 342, 500
Bst4CI ACNGT 2 cut(s) 218, 269
Bst6I CTCTTC 3 cut(s) 372, 554, 702
BstBAI YACGTR 2 cut(s) 328, 436
BstC8I GCNNGC 4 cut(s) 7, 338, 505, 600
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 5 cut(s) 60, 88, 525, 714, 745
BstMAI GTCTC 4 cut(s) 64, 187, 374, 449
BstMBI GATC 5 cut(s) 57, 85, 522, 711, 742
BstMWI GCNNNNNNNGC 6 cut(s) 119, 342, 357, 371, 509, 518
BstNI CCWGG 3 cut(s) 81, 342, 500
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 79, 340, 498
BstSFI CTRYAG 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 328
BstUI CGCG 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 5 cut(s) 79, 113, 282, 321, 340
BsuTUI ATCGAT 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 4 cut(s) 7, 338, 505, 600
CaiI CAGNNNCTG 1 cut(s) 216
Cfr10I RCCGGY 2 cut(s) 336, 356
Cfr13I GGNCC 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 60
CviAII CATG 3 cut(s) 128, 253, 348
DdeI CTNAG 1 cut(s) 74
DpnI GATC 5 cut(s) 59, 87, 524, 713, 744
DpnII GATC 5 cut(s) 57, 85, 522, 711, 742
EaeI YGGCCR 3 cut(s) 111, 280, 338
Eam1104I CTCTTC 3 cut(s) 372, 554, 702
EarI CTCTTC 3 cut(s) 372, 554, 702
EciI GGCGGA 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 79
Eco31I GGTCTC 2 cut(s) 374, 449
Eco32I GATATC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 425, 726
Eco72I CACGTG 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 79, 340, 498
EcoRV GATATC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 3 cut(s) 131, 256, 351
FaiI YATR 7 cut(s) 96, 129, 134, 254, 349, 515, 549
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 127, 252, 347
Fnu4HI GCNGC 2 cut(s) 111, 295
Fsp4HI GCNGC 2 cut(s) 111, 295
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 111, 295
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 5 cut(s) 79, 113, 282, 321, 340
HapII CCGG 2 cut(s) 337, 357
Hin1II CATG 3 cut(s) 131, 256, 351
HinfI GANTC 6 cut(s) 37, 43, 72, 157, 535, 631
HpaII CCGG 2 cut(s) 337, 357
HphI GGTGA 1 cut(s) 632
Hpy188I TCNGA 4 cut(s) 42, 242, 302, 444
Hpy188III TCNNGA 2 cut(s) 192, 734
Hpy99I CGWCG 2 cut(s) 281, 481
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 218, 269
HpyCH4IV ACGT 2 cut(s) 327, 435
HpyCH4V TGCA 5 cut(s) 210, 261, 351, 374, 474
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 342, 357, 371, 509, 518
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 2 cut(s) 327, 435
Hsp92II CATG 3 cut(s) 131, 256, 351
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 5 cut(s) 57, 85, 522, 711, 742
LmnI GCTCC 2 cut(s) 370, 492
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 327, 435
MaeIII GTNAC 2 cut(s) 685, 716
MalI GATC 5 cut(s) 59, 87, 524, 713, 744
MboI GATC 5 cut(s) 57, 85, 522, 711, 742
MboII GAAGA 4 cut(s) 389, 571, 640, 719
MhlI GDGCHC 1 cut(s) 509
MlyI GAGTC 2 cut(s) 31, 66
MnlI CCTC 9 cut(s) 191, 236, 248, 299, 355, 394, 401, 637, 645
MroNI GCCGGC 1 cut(s) 336
MseI TTAA 4 cut(s) 165, 407, 593, 725
MspI CCGG 2 cut(s) 337, 357
MspR9I CCNGG 3 cut(s) 81, 342, 500
MvaI CCWGG 3 cut(s) 81, 342, 500
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 6 cut(s) 119, 342, 357, 371, 509, 518
NaeI GCCGGC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 127
NdeII GATC 5 cut(s) 57, 85, 522, 711, 742
NgoMIV GCCGGC 1 cut(s) 336
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 131, 256, 351
NlaIV GGNNCC 3 cut(s) 320, 366, 485
NmuCI GTSAC 2 cut(s) 685, 716
NspI RCATGY 1 cut(s) 351
PceI AGGCCT 1 cut(s) 79
PdiI GCCGGC 1 cut(s) 338
PfeI GAWTC 4 cut(s) 43, 157, 535, 631
PkrI GCNGC 2 cut(s) 112, 296
PleI GAGTC 2 cut(s) 31, 66
PmaCI CACGTG 1 cut(s) 436
PmlI CACGTG 1 cut(s) 436
PpsI GAGTC 2 cut(s) 31, 66
Ppu21I YACGTR 2 cut(s) 328, 436
Psp6I CCWGG 3 cut(s) 79, 340, 498
PspCI CACGTG 1 cut(s) 436
PspGI CCWGG 3 cut(s) 79, 340, 498
PspN4I GGNNCC 3 cut(s) 320, 366, 485
PspPI GGNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 212
PstNI CAGNNNCTG 1 cut(s) 216
SaqAI TTAA 4 cut(s) 165, 407, 593, 725
SatI GCNGC 2 cut(s) 111, 295
Sau3AI GATC 5 cut(s) 57, 85, 522, 711, 742
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 2 cut(s) 31, 66
ScrFI CCNGG 3 cut(s) 81, 342, 500
SduI GDGCHC 1 cut(s) 509
SfcI CTRYAG 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SnaBI TACGTA 1 cut(s) 328
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 6 cut(s) 110, 274, 292, 295, 464, 487
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 79, 340, 498
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 218, 269
TaiI ACGT 2 cut(s) 330, 438
TaqI TCGA 2 cut(s) 60, 191
TauI GCSGC 2 cut(s) 113, 297
TfiI GAWTC 4 cut(s) 43, 157, 535, 631
Tru1I TTAA 4 cut(s) 165, 407, 593, 725
Tru9I TTAA 4 cut(s) 165, 407, 593, 725
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 2 cut(s) 685, 716
Tsp45I GTSAC 2 cut(s) 685, 716
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 1 cut(s) 721
XceI RCATGY 1 cut(s) 351
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.