RchiOBHm_Chr6g0256071

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
11444557 .. 11444793
237 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGAAGGAAAGTTCTTCATTGCCACCAGTTTGCTTGAACCACAGCTCGAGCAAATTTTAGATGAACATCGTCCTCATTGCCTTGTTGCTGATGCTTTCTTTCCTTTTGCTACTGATGTTGCTGCTAAGTTTGGAATTCCAAGGCTATATTTTCATGGAACTGGTTTCTTCCCTTTATGTGCTTCATTGAGTGTGATGATATATCAACCTAACAGGAAGTTGTCAACCGACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.79

Weight (kDa)

5.8

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 54, 135
AgsI TTSAA 1 cut(s) 38
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 54, 135
AvaI CYCGRG 1 cut(s) 47
BbvI GCAGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 47
BmsI GCATC 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 27, 166
Bse3DI GCAATG 2 cut(s) 18, 76
Bse8I GATNNNNATC 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 140
BseJI GATNNNNATC 1 cut(s) 66
BseMI GCAATG 2 cut(s) 18, 76
BseNI ACTGG 2 cut(s) 27, 166
BseXI GCAGC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 18, 76
BsrI ACTGG 2 cut(s) 27, 166
BssECI CCNNGG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 109
CviAII CATG 1 cut(s) 155
CviJI RGCY 2 cut(s) 46, 145
CviKI_1 RGCY 2 cut(s) 46, 145
DdeI CTNAG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 158
FaiI YATR 5 cut(s) 148, 156, 178, 202, 235
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 1 cut(s) 158
LpnPI CCDG 3 cut(s) 40, 147, 199
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 82
MboII GAAGA 2 cut(s) 7, 160
MluCI AATT 2 cut(s) 54, 135
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 1 cut(s) 84
NlaIII CATG 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 47
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 47
SatI GCNGC 1 cut(s) 123
SchI GAGTC 1 cut(s) 224
SetI ASST 2 cut(s) 48, 211
SfaNI GCATC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 47
SgeI CNNG 9 cut(s) 39, 47, 59, 61, 95, 153, 167, 174, 226
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 54, 135
StyI CCWWGG 1 cut(s) 140
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 54, 135
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 4 cut(s) 7, 78, 143, 174
XapI RAATTY 2 cut(s) 54, 135
XhoI CTCGAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.