Rmu_sc0015993.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015993.1
OG0018631
Physical Location & Seq
Forward (+)
55 .. 669
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015993.1_g000001.1.cds

Sequence Viewer

Length: 615 bp
atgaaggaaaagttcttcaaagctatcactttgactgaacaccgggtggagcagattttagagcaatatcaccccaactgtctcgtagcagactctttatttcattgggcaacagttgttgctgccaagtttgggatcccaggtctcatctttcatggaactggtttttttcccctgtgtgcttcaatgagtgtgatgctgtaccaagctcacgtgaaggtttcatctgattcagaaccttttgtaattccaaatctcccagatgagatccagacgacaagaaaccaactaccatcgtttcttaatctaaatggtgagacaggactcatcaaattggtcaaagcatcaagagatgtagaggaaaggagctatgggattttggttaacagcttctatgaacttgaatcagagtatgtagatcattacaggatggtgtttggcaggaagtcatggcacattggcccagcttctctatacaacaaggcagaaaaagataaatcagagaggggaagggaaggctctgttgatgaagtacatgaatgcttaaattggcttaattctaagaaaaccaattcggttgtgtatatatgttggaagtgtgaccaatttcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

204

Amino Acids

23.43

Weight (kDa)

6.24

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 130, 143, 262
AcvI CACGTG 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 2 cut(s) 203, 534
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 3 cut(s) 19, 186, 404
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 5 cut(s) 23, 209, 369, 390, 467
AluI AGCT 5 cut(s) 23, 209, 369, 390, 467
Alw26I GTCTC 3 cut(s) 86, 149, 311
AlwI GGATC 3 cut(s) 130, 143, 262
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 62, 326
BamHI GGATCC 1 cut(s) 135
BbrPI CACGTG 1 cut(s) 214
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 301, 424
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 86, 149, 311
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 44, 141
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 44, 141
BmsI GCATC 2 cut(s) 186, 353
BpuMI CCSGG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 463
BshFI GGCC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 3 cut(s) 86, 149, 311
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 1 cut(s) 462
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 135, 267, 418
BspANI GGCC 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 3 cut(s) 130, 143, 262
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 3 cut(s) 135, 267, 418
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 80, 115
BstBAI YACGTR 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 3 cut(s) 138, 270, 421
BstMAI GTCTC 3 cut(s) 86, 149, 311
BstMBI GATC 3 cut(s) 135, 267, 418
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 42, 139
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 135, 267
BstYI RGATCY 2 cut(s) 135, 267
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 202, 533
CviAII CATG 3 cut(s) 155, 450, 536
CviJI RGCY 8 cut(s) 23, 209, 369, 390, 462, 467, 519, 553
CviKI_1 RGCY 8 cut(s) 23, 209, 369, 390, 462, 467, 519, 553
CviQI GTAC 2 cut(s) 202, 533
DdeI CTNAG 1 cut(s) 561
DpnI GATC 3 cut(s) 137, 269, 420
DpnII GATC 3 cut(s) 135, 267, 418
DraIII CACNNNGTG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 149
Eco72I CACGTG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 158, 453, 539
FatI CATG 3 cut(s) 154, 449, 535
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 467
HaeIII GGCC 1 cut(s) 462
HapII CCGG 1 cut(s) 43
Hin1II CATG 3 cut(s) 158, 453, 539
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 4 cut(s) 92, 230, 324, 404
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 62, 326
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 229, 235, 409, 502
Hpy188III TCNNGA 2 cut(s) 271, 348
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 3 cut(s) 211, 504, 509
HpyCH4III ACNGT 2 cut(s) 80, 115
HpyCH4IV ACGT 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 158, 453, 539
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 3 cut(s) 135, 267, 418
LmnI GCTCC 2 cut(s) 49, 366
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 186, 353
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 599
MalI GATC 3 cut(s) 137, 269, 420
MboI GATC 3 cut(s) 135, 267, 418
MboII GAAGA 1 cut(s) 7
MflI RGATCY 2 cut(s) 135, 267
MluCI AATT 6 cut(s) 246, 332, 547, 556, 571, 605
MlyI GAGTC 2 cut(s) 86, 318
MmeI TCCRAC 1 cut(s) 572
MnlI CCTC 2 cut(s) 352, 498
MseI TTAA 4 cut(s) 303, 384, 545, 555
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 44, 141
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 44
NdeII GATC 3 cut(s) 135, 267, 418
NlaIII CATG 3 cut(s) 158, 453, 539
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 599
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 230, 404
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 86, 318
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 2 cut(s) 86, 318
Ppu21I YACGTR 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 139
PspCI CACGTG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 2 cut(s) 135, 267
RsaI GTAC 2 cut(s) 203, 534
RsaNI GTAC 2 cut(s) 202, 533
SaqAI TTAA 4 cut(s) 303, 384, 545, 555
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 3 cut(s) 135, 267, 418
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 2 cut(s) 86, 318
ScrFI CCNGG 2 cut(s) 44, 141
SetI ASST 9 cut(s) 25, 145, 211, 216, 222, 241, 371, 392, 469
SfaNI GCATC 2 cut(s) 186, 353
Sse9I AATT 6 cut(s) 246, 332, 547, 556, 571, 605
StyD4I CCNGG 2 cut(s) 42, 139
TaaI ACNGT 2 cut(s) 80, 115
TaiI ACGT 1 cut(s) 216
TasI AATT 6 cut(s) 246, 332, 547, 556, 571, 605
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 2 cut(s) 230, 404
Tru1I TTAA 4 cut(s) 303, 384, 545, 555
Tru9I TTAA 4 cut(s) 303, 384, 545, 555
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 7 cut(s) 17, 92, 143, 213, 411, 543, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.