Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018631

Physical Location & Seq

Genomic Coordinates Forward (+)

57425211 .. 57427337

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAAACCAAAACTCATCATCAGCTTCACATTTTCTTCCTTCCATTTATGGCTCAGGGCCACATTTTGCCCCTCCTAGACATAGCAAAAATATTTGCTTCATGTGGTGTAAAATCAACCATAACAACCACCCTTCTCAATGCACCAGGCTTCTCCAAACAAATCCAAACAAGCAAACATTTAGGTTTTGAAATTGAACCTGTTGTCATCAAATTTCCATCTGCTGAAGTTGGTTTGCCTGCAGGAGTAGAAAGTACTCACTTGGCTACTACCCAAGAAATGAAGGAAAAGTTCTTCAAAGCTATCACTCTGCTTGAACACCAGGTGGAGCAGATTTTAGAGCAATATCACTCCAACTGTCTCGTAGCAGACTCTTTATTTCATTGGGCGACAGTTGTTGCTTCCAAGTTTGGGATCCCAGGTCTCATCTTTCATGGAACTGGTTTTTTCCCCCTGTGTGCTTCAATGAGTGCGATGCTGTACCAACCTCACGTGCAGGTTTCATCTGATTCAGAACCTTTTGTAATTCCAAATCTCCCAGATGAGATCCAGACGACAAGAAACCAACTACCATCGTTTCTTAATCTAAATGGTGAGACAGCACTCATCAAATTGGTCAAAGCATCAAGAGACGCAGAGGAAAGGAGCTATGGGATTTTTGTTAACAGATTTGATTGTCAGCTGGTAGAAATTGCCTTGGGTCTTGGGGCTTCTCGGCAGCAATTCGTTTGGGTTGTGAAGAAAGAAAAGAATGATGAAAATAAGTGGTTGCCTGAACAGTTTGAGCAGAGAATGCAAGGGCAGTTTTACAATGAGAAGTTGGTGACTCAGATACTTGGAATTGGGGTTTCTGTTGGTGTTCAAAAGTGGGCTACATTGGAGGATGACAGTCTGAAGAGTGAAGCCAGTGTGAAGAGGGATGACATAGAAAATGCTGTAACTGAAATCATGGTGAGTGATAAAAAAGAGGAAATGAGAAGCAAAGTTTCTGCGCTCGGAGATATGGCAAGGAGGGCAGTTGAAGAAGGTGGTTCCTCATTCTCCCAATTAGCTACTCTTATTGAAGATTTGAGTTCGTTCTTAAGAAGGACTGGTTACAAGGCGGCGGGCATCCCTGGGGGTTGGAGGCTTTTTGACCCATTGCGGATGGAACTCAAGCAGTGTCTGCCGGAGTTCCGGTGGCAACTTGGCATTGGGGTTGGTGTTGGAGTTTCAAATTCGGCTAGATATGGAGGAGGGGAAGGAGTGAAGAGTAAAGCTAGAGTAATAAAGATGGTGGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

429

Amino Acids

47.61

Weight (kDa)

6.62

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018631)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0256071 RchiOBHm_Chr6g0256101 RchiOBHm_Chr6g0256171 RchiOBHm_Chr6g0256271
rosa_laevigata	RLG00000014779
rosa_multiflora	Rmu_sc0005080.1_g000004 Rmu_sc0015992.1_g000001 Rmu_sc0015993.1_g000001
rosa_roxburghii	Rroxscaffold_7G00209400
rosa_rugosa	Rorug05G0562800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	3 cut(s)	1103, 1106, 1144
AclWI	GGATC	3 cut(s)	409, 422, 541
AcsI	RAATTY	2 cut(s)	212, 1216
AcuI	CTGAAG	2 cut(s)	246, 914
AcvI	CACGTG	1 cut(s)	493
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	256, 482
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflII	CTTAAG	1 cut(s)	1081
AgsI	TTSAA	9 cut(s)	191, 197, 298, 317, 465, 863, 1022, 1064, 1215
AjnI	CCWGG	4 cut(s)	145, 321, 418, 1114
AluBI	AGCT	6 cut(s)	25, 302, 648, 682, 1052, 1259
AluI	AGCT	6 cut(s)	25, 302, 648, 682, 1052, 1259
Alw26I	GTCTC	4 cut(s)	365, 428, 590, 624
AlwI	GGATC	3 cut(s)	409, 422, 541
AlwNI	CAGNNNCTG	1 cut(s)	1165
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	2 cut(s)	212, 1216
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	605, 835, 964
BamHI	GGATCC	1 cut(s)	414
BbrPI	CACGTG	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	4 cut(s)	226, 580, 1141, 1267
BciT130I	CCWGG	4 cut(s)	147, 323, 420, 1116
BcoDI	GTCTC	4 cut(s)	365, 428, 590, 624
BfaI	CTAG	3 cut(s)	77, 1224, 1260
BfmI	CTRYAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	1081
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	719, 1104
BlsI	GCNGC	2 cut(s)	720, 1105
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	147, 323, 420, 1116
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	416, 1033
BmrFI	CCNGG	4 cut(s)	147, 323, 420, 1116
BmsI	GCATC	3 cut(s)	465, 632, 1119
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	1139
BsaAI	YACGTR	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	4 cut(s)	418, 696, 1114, 1115
BsaWI	WCCGGW	1 cut(s)	1176
BsaXI	ACNNNNNCTCC	2 cut(s)	1163, 1193
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	3 cut(s)	445, 906, 1096
Bse3DI	GCAATG	1 cut(s)	1139
BseBI	CCWGG	4 cut(s)	147, 323, 420, 1116
BseDI	CCNNGG	4 cut(s)	418, 696, 1114, 1115
BseGI	GGATG	4 cut(s)	889, 925, 1110, 1152
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	1139
BseMII	CTCAG	2 cut(s)	68, 842
BseNI	ACTGG	3 cut(s)	445, 906, 1096
BseRI	GAGGAG	1 cut(s)	1248
BseXI	GCAGC	1 cut(s)	730
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	1169, 1177
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	4 cut(s)	365, 428, 590, 624
BsmBI	CGTCTC	1 cut(s)	624
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	414, 546
BspACI	CCGC	3 cut(s)	1103, 1106, 1144
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	67, 841
BspLI	GGNNCC	2 cut(s)	416, 1033
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	3 cut(s)	409, 422, 541
BspTI	CTTAAG	1 cut(s)	1081
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	1139
BsrI	ACTGG	3 cut(s)	445, 906, 1096
BssECI	CCNNGG	4 cut(s)	418, 696, 1114, 1115
BssMI	GATC	2 cut(s)	414, 546
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	4 cut(s)	147, 323, 420, 1116
Bst4CI	ACNGT	4 cut(s)	359, 394, 780, 890
Bst6I	CTCTTC	3 cut(s)	890, 908, 1244
BstAFI	CTTAAG	1 cut(s)	1081
BstAPI	GCANNNNNTGC	2 cut(s)	793, 1165
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	240, 1108
BstDEI	CTNAG	2 cut(s)	54, 828
BstF5I	GGATG	4 cut(s)	889, 925, 1110, 1152
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	2 cut(s)	417, 549
BstMAI	GTCTC	4 cut(s)	365, 428, 590, 624
BstMBI	GATC	2 cut(s)	414, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	793, 1013, 1165
BstNI	CCWGG	4 cut(s)	147, 323, 420, 1116
BstSCI	CCNGG	4 cut(s)	145, 321, 418, 1114
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	730
BstX2I	RGATCY	2 cut(s)	414, 546
BstYI	RGATCY	2 cut(s)	414, 546
BsuRI	GGCC	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	4 cut(s)	889, 925, 1110, 1152
BtsI	GCAGTG	1 cut(s)	1166
BtsIMutI	CAGTG	2 cut(s)	913, 1166
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	240, 1108
CaiI	CAGNNNCTG	1 cut(s)	1165
CfoI	GCGC	1 cut(s)	994
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	641
CsiI	ACCWGGT	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	255, 481
CviAII	CATG	3 cut(s)	102, 434, 949
CviQI	GTAC	2 cut(s)	255, 481
DdeI	CTNAG	2 cut(s)	54, 828
DpnI	GATC	2 cut(s)	416, 548
DpnII	GATC	2 cut(s)	414, 546
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	3 cut(s)	890, 908, 1244
EarI	CTCTTC	3 cut(s)	890, 908, 1244
Eco130I	CCWWGG	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	246, 914
Eco72I	CACGTG	1 cut(s)	493
EcoRII	CCWGG	4 cut(s)	145, 321, 418, 1114
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	624
FaeI	CATG	3 cut(s)	105, 437, 952
FatI	CATG	3 cut(s)	101, 433, 948
FauI	CCCGC	1 cut(s)	1099
Fnu4HI	GCNGC	2 cut(s)	719, 1104
FokI	GGATG	4 cut(s)	896, 932, 1097, 1159
Fsp4HI	GCNGC	2 cut(s)	719, 1104
FspBI	CTAG	3 cut(s)	77, 1224, 1260
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	2 cut(s)	719, 1104
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	2 cut(s)	1169, 1177
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	1 cut(s)	994
Hin1II	CATG	3 cut(s)	105, 437, 952
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	3 cut(s)	371, 509, 826
HpaI	GTTAAC	1 cut(s)	664
HpaII	CCGG	2 cut(s)	1169, 1177
HphI	GGTGA	3 cut(s)	605, 835, 964
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	5 cut(s)	508, 514, 831, 894, 998
Hpy188III	TCNNGA	2 cut(s)	550, 627
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	6 cut(s)	50, 143, 277, 1019, 1080, 1235
HpyCH4III	ACNGT	4 cut(s)	359, 394, 780, 890
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	4 cut(s)	143, 242, 496, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	793, 1013, 1165
HpyF3I	CTNAG	2 cut(s)	54, 828
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	105, 437, 952
HspAI	GCGC	1 cut(s)	992
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	414, 546
LmnI	GCTCC	2 cut(s)	328, 645
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	3 cut(s)	465, 632, 1119
MabI	ACCWGGT	1 cut(s)	321
MaeI	CTAG	3 cut(s)	77, 1224, 1260
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	823, 937, 1094
MalI	GATC	2 cut(s)	416, 548
MboI	GATC	2 cut(s)	414, 546
MboII	GAAGA	8 cut(s)	28, 286, 751, 907, 925, 1034, 1076, 1261
MflI	RGATCY	2 cut(s)	414, 546
MluCI	AATT	9 cut(s)	192, 212, 525, 611, 690, 722, 840, 1046, 1216
MlyI	GAGTC	2 cut(s)	365, 820
MmeI	TCCRAC	3 cut(s)	378, 1103, 1186
MseI	TTAA	3 cut(s)	582, 663, 1082
MspA1I	CMGCKG	1 cut(s)	682
MspCI	CTTAAG	1 cut(s)	1081
MspI	CCGG	2 cut(s)	1169, 1177
MspR9I	CCNGG	4 cut(s)	147, 323, 420, 1116
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	4 cut(s)	147, 323, 420, 1116
MwoI	GCNNNNNNNGC	3 cut(s)	793, 1013, 1165
NdeII	GATC	2 cut(s)	414, 546
NlaIII	CATG	3 cut(s)	105, 437, 952
NlaIV	GGNNCC	2 cut(s)	416, 1033
NmeAIII	GCCGAG	1 cut(s)	694
NmuCI	GTSAC	1 cut(s)	823
PasI	CCCWGGG	1 cut(s)	1115
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	720, 1105
PleI	GAGTC	2 cut(s)	365, 820
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
PpsI	GAGTC	2 cut(s)	365, 820
Ppu21I	YACGTR	1 cut(s)	493
Psp6I	CCWGG	4 cut(s)	145, 321, 418, 1114
PspCI	CACGTG	1 cut(s)	493
PspGI	CCWGG	4 cut(s)	145, 321, 418, 1114
PspN4I	GGNNCC	2 cut(s)	416, 1033
PspPI	GGNCC	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	1165
PsuI	RGATCY	2 cut(s)	414, 546
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	2 cut(s)	256, 482
RsaNI	GTAC	2 cut(s)	255, 481
SaqAI	TTAA	3 cut(s)	582, 663, 1082
SatI	GCNGC	2 cut(s)	719, 1104
Sau3AI	GATC	2 cut(s)	414, 546
Sau96I	GGNCC	1 cut(s)	58
SbfI	CCTGCAGG	1 cut(s)	244
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	2 cut(s)	365, 820
ScrFI	CCNGG	4 cut(s)	147, 323, 420, 1116
SdaI	CCTGCAGG	1 cut(s)	244
SexAI	ACCWGGT	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	465, 632, 1119
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	1081, 1154
SmoI	CTYRAG	2 cut(s)	1081, 1154
Sse8387I	CCTGCAGG	1 cut(s)	244
Sse9I	AATT	9 cut(s)	192, 212, 525, 611, 690, 722, 840, 1046, 1216
SsiI	CCGC	3 cut(s)	1103, 1106, 1144
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	3 cut(s)	77, 1224, 1260
StyD4I	CCNGG	4 cut(s)	145, 321, 418, 1114
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	4 cut(s)	359, 394, 780, 890
TaiI	ACGT	1 cut(s)	495
TasI	AATT	9 cut(s)	192, 212, 525, 611, 690, 722, 840, 1046, 1216
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	1 cut(s)	1106
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	582, 663, 1082
Tru9I	TTAA	3 cut(s)	582, 663, 1082
TscAI	CASTG	2 cut(s)	913, 1166
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	6 cut(s)	90, 296, 371, 422, 492, 771
TspRI	CASTG	2 cut(s)	913, 1166
Vha464I	CTTAAG	1 cut(s)	1081
XapI	RAATTY	2 cut(s)	212, 1216
XspI	CTAG	3 cut(s)	77, 1224, 1260
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.