Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018631

Physical Location & Seq

Genomic Coordinates Forward (+)

75439244 .. 75440353

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0562800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCGTGAGGTCAGCTCCGCCGACTACAACCCCACGCGCCGCGACTCGTTGTTCACCGCCTCGTGGGACGACACCGTGAAGCTTTGGACCGTCGACCGCCCCGCCTCCATTCGCACCTTCAAGGAGCACGCCTACTGCGTGTACTCCGCCGCCTTTGGTGTGAAGAGCTCGGAAGCTCATTCTGATTGTCAATGGAGGCCTTCGAGACCTCCAGCGATTCAGTATATACCGCAGCATTTGGTGAGACTGTTGCAAATTATTGTGGACAGTAACTGCGACATGGGTGTACGTCAGGTTGCCAGCATCCATTTCAAGAACTTCATTGGAAAGAACTGGTTACCTCATGAGCCAGATGAGCAGAATAAGATATCACAAGCTGACAAAGACGTGGTTAGAGAGCACGTTCTTGTCTTTGTTACACAGGTTCCCCCATTGTTAAGGGTACAACTGGGTGAGTGCCTAAAGACAATTATTTATGTCGATTACCCTGAGCGGTGGCCACGACTTTTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

171

Amino Acids

19.85

Weight (kDa)

7.01

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	14 - 56	7.2e-06	WDR5 beta-propeller domain
IBN_N	PF03810	74 - 138	1.5e-11	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018631)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0256071 RchiOBHm_Chr6g0256101 RchiOBHm_Chr6g0256171 RchiOBHm_Chr6g0256271
rosa_laevigata	RLG00000014779
rosa_multiflora	Rmu_sc0005080.1_g000004 Rmu_sc0015992.1_g000001 Rmu_sc0015993.1_g000001
rosa_roxburghii	Rroxscaffold_7G00209400
rosa_rugosa	Rorug05G0562800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	37, 42
AciI	CCGC	9 cut(s)	18, 40, 57, 97, 102, 147, 150, 230, 493
AcoI	YGGCCR	1 cut(s)	497
AfaI	GTAC	3 cut(s)	143, 288, 444
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	121, 313
AjiI	CACGTC	1 cut(s)	388
AluBI	AGCT	5 cut(s)	15, 82, 168, 176, 377
AluI	AGCT	5 cut(s)	15, 82, 168, 176, 377
Alw21I	GWGCWC	3 cut(s)	129, 170, 402
Alw26I	GTCTC	2 cut(s)	199, 238
AlwNI	CAGNNNCTG	1 cut(s)	273
AoxI	GGCC	2 cut(s)	197, 497
ApeKI	GCWGC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	46, 253, 464
AvaII	GGWCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	3 cut(s)	129, 170, 402
BbvI	GCAGC	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	199, 238
BfaI	CTAG	1 cut(s)	514
BisI	GCNGC	3 cut(s)	40, 150, 233
BlsI	GCNGC	3 cut(s)	41, 151, 234
Bme18I	GGWCC	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	458
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	338, 453
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	338, 453
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	2 cut(s)	37, 42
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	199, 499
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	3 cut(s)	129, 170, 402
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	199, 238
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	199, 499
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	3 cut(s)	129, 170, 402
BspACI	CCGC	9 cut(s)	18, 40, 57, 97, 102, 147, 150, 230, 493
BspANI	GGCC	2 cut(s)	199, 499
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	2 cut(s)	37, 42
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	426
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	338, 453
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	4 cut(s)	76, 91, 249, 269
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	129, 301
BstDEI	CTNAG	1 cut(s)	489
BstEII	GGTNACC	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	2 cut(s)	37, 42
BstHHI	GCGC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	199, 238
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstPI	GGTNACC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	37, 42
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	199, 499
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	129, 301
CaiI	CAGNNNCTG	1 cut(s)	273
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	142, 287, 443
CviAII	CATG	2 cut(s)	280, 344
CviJI	RGCY	8 cut(s)	15, 82, 168, 176, 199, 349, 377, 499
CviKI_1	RGCY	8 cut(s)	15, 82, 168, 176, 199, 349, 377, 499
CviQI	GTAC	3 cut(s)	142, 287, 443
DdeI	CTNAG	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	2 cut(s)	7, 136
Ecl136II	GAGCTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	170
FaeI	CATG	2 cut(s)	283, 347
FaiI	YATR	5 cut(s)	225, 227, 281, 345, 477
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	279, 343
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	40, 150, 233
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	3 cut(s)	40, 150, 233
FspBI	CTAG	1 cut(s)	514
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	40, 150, 233
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	199, 499
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	283, 347
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	44, 217
HphI	GGTGA	3 cut(s)	46, 253, 464
Hpy166II	GTNNAC	5 cut(s)	54, 94, 142, 265, 287
Hpy188I	TCNGA	2 cut(s)	172, 184
Hpy188III	TCNNGA	3 cut(s)	204, 313, 344
Hpy8I	GTNNAC	5 cut(s)	54, 94, 142, 265, 287
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	127, 210
HpyCH4III	ACNGT	4 cut(s)	76, 91, 249, 269
HpyCH4IV	ACGT	3 cut(s)	289, 387, 402
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	3 cut(s)	289, 387, 402
Hsp92II	CATG	2 cut(s)	283, 347
HspAI	GCGC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	20, 124
LpnPI	CCDG	8 cut(s)	225, 278, 313, 319, 363, 407, 434, 501
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	514
MaeII	ACGT	3 cut(s)	289, 387, 402
MaeIII	GTNAC	3 cut(s)	269, 336, 415
MbiI	CCGCTC	1 cut(s)	493
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	3 cut(s)	129, 170, 402
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	2 cut(s)	255, 468
MluNI	TGGCCA	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	5 cut(s)	70, 115, 189, 219, 351
Mox20I	TGGCCA	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	499
MseI	TTAA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	499
MvnI	CGCG	2 cut(s)	37, 42
MwoI	GCNNNNNNNGC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	283, 347
NlaIV	GGNNCC	1 cut(s)	426
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	41, 151, 234
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	170
PspEI	GGTNACC	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	273
RsaI	GTAC	3 cut(s)	143, 288, 444
RsaNI	GTAC	3 cut(s)	142, 287, 443
SacI	GAGCTC	1 cut(s)	170
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	3 cut(s)	40, 150, 233
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	3 cut(s)	129, 170, 402
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	255, 468
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	9 cut(s)	18, 40, 57, 97, 102, 147, 150, 230, 493
SspMI	CTAG	1 cut(s)	514
SstI	GAGCTC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	4 cut(s)	76, 91, 249, 269
TaiI	ACGT	3 cut(s)	292, 390, 405
TaqI	TCGA	3 cut(s)	93, 203, 480
TasI	AATT	2 cut(s)	255, 468
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	42, 152
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.