Rmu_sc0015992.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015992.1
OG0018631
Physical Location & Seq
Forward (+)
1763 .. 2608
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015992.1_g000001.1.cds

Sequence Viewer

Length: 846 bp
atggctcagggccacattttgcccatcctagacatagcaaaagtatttgcttcatgtggtgtaaaatcaaccataataaccacccttctcaatgcaccaggcttctccaaacaaatccaaacaagcaaacatttaggttttgaaattgaacctgttgtcaacaagtttccatccgctgaggttggtttgcctgcaggaatagaaagtactcacttggctactacccaagaaatgaaggaaaagttcttcaaagctatcgctctggctgaacaccaggtggagcagattttagagcaatatcaccccaactgtctcgtagcagactctttatttcattgggcaacagttgttgctgccaagtttgggatcccaggtctcatctttcatggaactggtttttttcccctgtgtgcttcaatgagtgtgatgctgtaccaagctcacgtgaaggtttcatctgattcagaaccttttgtaattccaaatctcccagatgagatccagacgacaagaaaccaactaccatcgtttcttaatctaaatggtgagacaggactcatcaaattggtcaaagcatcaagagatgtagaggaaaggagctatgggattttggttaacagcttctatgaacttgaatcagagtatgtagatcattacaggatggtgtttggcaggaagtcatggcacattggcccagcttctctatacaacaaggcagaaaaagataaatcagagaggggaagggaaggctctgttgatgaagtacatgaatgcttaaattggcttaattctaagaaaaccaattcggttgtgtatatatgttggaagtgtgaccaatttcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

281

Amino Acids

31.46

Weight (kDa)

6.12

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclWI GGATC 3 cut(s) 361, 374, 493
AcvI CACGTG 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 3 cut(s) 208, 434, 765
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 5 cut(s) 143, 149, 250, 417, 635
AjnI CCWGG 3 cut(s) 97, 273, 370
AluBI AGCT 5 cut(s) 254, 440, 600, 621, 698
AluI AGCT 5 cut(s) 254, 440, 600, 621, 698
Alw26I GTCTC 3 cut(s) 317, 380, 542
AlwI GGATC 3 cut(s) 361, 374, 493
AoxI GGCC 2 cut(s) 10, 691
ApeKI GCWGC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 10, 692
AsuHPI GGTGA 2 cut(s) 293, 557
BamHI GGATCC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 340
BccI CCATC 4 cut(s) 32, 178, 532, 655
BciT130I CCWGG 3 cut(s) 99, 275, 372
BcoDI GTCTC 3 cut(s) 317, 380, 542
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 3 cut(s) 99, 275, 372
BmgT120I GGNCC 2 cut(s) 10, 692
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 3 cut(s) 99, 275, 372
BmsI GCATC 2 cut(s) 417, 584
Bpu10I CCTNAGC 2 cut(s) 6, 177
BsaAI YACGTR 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 3 cut(s) 99, 275, 372
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 3 cut(s) 24, 170, 666
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 20, 168
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 694
BshFI GGCC 2 cut(s) 12, 693
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 3 cut(s) 317, 380, 542
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 2 cut(s) 12, 693
Bso31I GGTCTC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 366, 498, 649
BspACI CCGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 12, 693
BspCNI CTCAG 2 cut(s) 19, 169
BspLI GGNNCC 1 cut(s) 368
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 3 cut(s) 361, 374, 493
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 3 cut(s) 366, 498, 649
Bst2UI CCWGG 3 cut(s) 99, 275, 372
Bst4CI ACNGT 2 cut(s) 311, 346
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 6, 177, 792
BstF5I GGATG 3 cut(s) 24, 170, 666
BstKTI GATC 3 cut(s) 369, 501, 652
BstMAI GTCTC 3 cut(s) 317, 380, 542
BstMBI GATC 3 cut(s) 366, 498, 649
BstNI CCWGG 3 cut(s) 99, 275, 372
BstSCI CCNGG 3 cut(s) 97, 273, 370
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 2 cut(s) 366, 498
BstYI RGATCY 2 cut(s) 366, 498
BsuRI GGCC 2 cut(s) 12, 693
BtsCI GGATG 3 cut(s) 24, 170, 666
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 10, 692
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 3 cut(s) 207, 433, 764
CviAII CATG 4 cut(s) 54, 386, 681, 767
CviQI GTAC 3 cut(s) 207, 433, 764
DdeI CTNAG 3 cut(s) 6, 177, 792
DpnI GATC 3 cut(s) 368, 500, 651
DpnII GATC 3 cut(s) 366, 498, 649
DraIII CACNNNGTG 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 380
Eco72I CACGTG 1 cut(s) 445
EcoRII CCWGG 3 cut(s) 97, 273, 370
FaeI CATG 4 cut(s) 57, 389, 684, 770
FatI CATG 4 cut(s) 53, 385, 680, 766
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 3 cut(s) 11, 157, 673
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 354
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 2 cut(s) 12, 693
Hin1II CATG 4 cut(s) 57, 389, 684, 770
HincII GTYRAC 2 cut(s) 160, 616
HindII GTYRAC 2 cut(s) 160, 616
HinfI GANTC 4 cut(s) 323, 461, 555, 635
HpaI GTTAAC 1 cut(s) 616
HphI GGTGA 2 cut(s) 293, 557
Hpy166II GTNNAC 2 cut(s) 160, 616
Hpy188I TCNGA 4 cut(s) 460, 466, 640, 733
Hpy188III TCNNGA 2 cut(s) 502, 579
Hpy8I GTNNAC 2 cut(s) 160, 616
HpyAV CCTTC 5 cut(s) 95, 229, 442, 735, 740
HpyCH4III ACNGT 2 cut(s) 311, 346
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 95, 194
HpyF3I CTNAG 3 cut(s) 6, 177, 792
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 4 cut(s) 57, 389, 684, 770
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 3 cut(s) 366, 498, 649
LmnI GCTCC 2 cut(s) 280, 597
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 2 cut(s) 417, 584
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 830
MalI GATC 3 cut(s) 368, 500, 651
MboI GATC 3 cut(s) 366, 498, 649
MboII GAAGA 1 cut(s) 238
MflI RGATCY 2 cut(s) 366, 498
MluCI AATT 7 cut(s) 144, 477, 563, 778, 787, 802, 836
MlyI GAGTC 2 cut(s) 317, 549
MmeI TCCRAC 1 cut(s) 803
MnlI CCTC 3 cut(s) 172, 583, 729
MseI TTAA 4 cut(s) 534, 615, 776, 786
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 3 cut(s) 99, 275, 372
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 3 cut(s) 99, 275, 372
NdeII GATC 3 cut(s) 366, 498, 649
NlaIII CATG 4 cut(s) 57, 389, 684, 770
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 830
PctI GAATGC 1 cut(s) 776
PfeI GAWTC 2 cut(s) 461, 635
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 2 cut(s) 317, 549
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 2 cut(s) 317, 549
Ppu21I YACGTR 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 97, 273, 370
PspCI CACGTG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 694
PspGI CCWGG 3 cut(s) 97, 273, 370
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 2 cut(s) 10, 692
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 2 cut(s) 366, 498
RsaI GTAC 3 cut(s) 208, 434, 765
RsaNI GTAC 3 cut(s) 207, 433, 764
SaqAI TTAA 4 cut(s) 534, 615, 776, 786
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 3 cut(s) 366, 498, 649
Sau96I GGNCC 2 cut(s) 10, 692
SbfI CCTGCAGG 1 cut(s) 196
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 2 cut(s) 317, 549
ScrFI CCNGG 3 cut(s) 99, 275, 372
SdaI CCTGCAGG 1 cut(s) 196
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 2 cut(s) 417, 584
SfcI CTRYAG 1 cut(s) 192
Sse8387I CCTGCAGG 1 cut(s) 196
Sse9I AATT 7 cut(s) 144, 477, 563, 778, 787, 802, 836
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 97, 273, 370
TaaI ACNGT 2 cut(s) 311, 346
TaiI ACGT 1 cut(s) 447
TasI AATT 7 cut(s) 144, 477, 563, 778, 787, 802, 836
TatI WGTACW 2 cut(s) 206, 763
TfiI GAWTC 2 cut(s) 461, 635
Tru1I TTAA 4 cut(s) 534, 615, 776, 786
Tru9I TTAA 4 cut(s) 534, 615, 776, 786
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 8 cut(s) 42, 248, 323, 374, 444, 642, 774, 783
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.