Rroxscaffold_7G00209400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
59637951 .. 59639401
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209400.1

Sequence Viewer

Length: 1254 bp
ATGGAAACCAAAACTTATCATCGGCTTCACATTTTCTTCCTTCCATTTGTGGCTCAGGGCCACATTTTGCCCCTCCTAGACATAGCAAAAGTATTTGCTTCATGTGGTGTAAAATCAACCATAATAACCACCCTTCTCAATGCACCAGGCTTCTCCAAACAAATCCAAACAAGCAAACATTTAGGTTTTGAAATTGAACCTGTTGTCATCAAATTTCCATCTGCTGAAATTGGTTTGCCTGCAGGAATAGAAAGGACTCACTTGGCTACTACCCAAGAAATGAAGGAAAAGTTCTTCAAAGCTATCACTCTGCTTGAACACCAGGTGGAGCAGATTTTAGAGCAATATCACCCCAACTGTCTCATAGCAGACTCTTTATTTCATTGGGCGACAGTTGTTGCTGCCAAGTTTGGGATCCCAGGTCTCATCTTTCATGAACTGGTTTTTTCCCCGTGTGCTTCAATGAGTGTGATGCTGTACCAACCTCACGTGAAGGTTTCATTTGATTCAGAACCTTTTGTAATTCCAAATCTCCCAGATGAGATCCAGACGACAAGAAACCAACTACCATCGTTTCTTAATCTAAATGGTGAGACAGGACTCATCAAATTGGTCAAAGCATCAAGAGACGCAGAGGAAAGGAGCTATGGGATTTTTATTAACAGCTTCTACGAACTTGAACCAGATTATGTAGATCATTACAGGACGGTGTTTGGCAGGAAGTCATGGCACATTGTCCCAGCTTCTCTATACAACAAGGCAGAAAAAGATAAATCAGAGAGGGGAAGGGAAGGCTCTGTTGATGAACCGGTAGAAATTGCCTTGGGTCTTGGGGCTTCTCAGCAGCAATTCATTTGGGTTGTGAAGAAAGAAAAGAATGATGAAAATAAGTGGTTGCCTGAACAGTTTGAGCAGAGAATGCAAGGAGCCTCTGCTGGTGTACCAATGATAACGTGGCCGGTGTCTGCAGGGCAGTTTTACAATGAGAAGTTGGTGACTCAGATACTTGGAATTGCTGTTGGTGTTCAAAAGTGGGCTACATTTGAGGATGACAGTCTGAAGAGTGAAGCCAGTGTGAAGAGGGATGACATAGAAAAGGCTGAGACTGTAATCATGGTGAGTGATAAAAAAGAGGAAATGAGAAGCAAAGTTTCTGCGCTCAGAGATATGGCAAGGAGGGCAGTTGAAGAAGGTGGTTCCTCATTCTCCCAATTACCTACTCTTATTGAAGATTTGAGGTCCCTTCAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

47.02

Weight (kDa)

5.8

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 409, 422, 538
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 1079, 1229
AcvI CACGTG 1 cut(s) 490
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 2 cut(s) 479, 942
AfiI CCNNNNNNNGG 1 cut(s) 411
AgeI ACCGGT 1 cut(s) 808
AgsI TTSAA 9 cut(s) 191, 197, 298, 317, 462, 680, 1028, 1187, 1229
AjnI CCWGG 3 cut(s) 145, 321, 418
AluBI AGCT 4 cut(s) 302, 645, 666, 743
AluI AGCT 4 cut(s) 302, 645, 666, 743
Alw26I GTCTC 5 cut(s) 365, 428, 587, 621, 1097
AlwI GGATC 3 cut(s) 409, 422, 538
AoxI GGCC 2 cut(s) 58, 956
ApeKI GCWGC 2 cut(s) 401, 844
ApoI RAATTY 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 808
AspLEI GCGC 1 cut(s) 1159
AspS9I GGNCC 2 cut(s) 58, 1239
AsuHPI GGTGA 4 cut(s) 341, 602, 1006, 1129
AvaII GGWCC 1 cut(s) 1239
BamHI GGATCC 1 cut(s) 414
BbrPI CACGTG 1 cut(s) 490
BbvI GCAGC 2 cut(s) 388, 856
BccI CCATC 2 cut(s) 226, 577
BciT130I CCWGG 3 cut(s) 147, 323, 420
BcoDI GTCTC 5 cut(s) 365, 428, 587, 621, 1097
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 240, 966
BisI GCNGC 2 cut(s) 402, 845
BlsI GCNGC 2 cut(s) 403, 846
Bme1390I CCNGG 3 cut(s) 147, 323, 420
Bme18I GGWCC 1 cut(s) 1239
BmgT120I GGNCC 2 cut(s) 58, 1239
BmiI GGNNCC 4 cut(s) 416, 928, 1198, 1241
BmrFI CCNGG 3 cut(s) 147, 323, 420
BmsI GCATC 2 cut(s) 462, 629
Bpu10I CCTNAGC 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 418, 822
BsaWI WCCGGW 1 cut(s) 808
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse118I RCCGGY 2 cut(s) 808, 958
Bse1I ACTGG 2 cut(s) 444, 1071
BseBI CCWGG 3 cut(s) 147, 323, 420
BseDI CCNNGG 2 cut(s) 418, 822
BseGI GGATG 2 cut(s) 1054, 1090
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 5 cut(s) 68, 854, 1013, 1092, 1174
BseNI ACTGG 2 cut(s) 444, 1071
BseXI GCAGC 2 cut(s) 388, 856
BseYI CCCAGC 1 cut(s) 739
BshFI GGCC 2 cut(s) 60, 958
BshTI ACCGGT 1 cut(s) 808
BsiSI CCGG 2 cut(s) 809, 959
BslFI GGGAC 2 cut(s) 722, 1225
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 5 cut(s) 365, 428, 587, 621, 1097
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 2 cut(s) 722, 1225
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 2 cut(s) 60, 958
Bso31I GGTCTC 1 cut(s) 428
Bsp143I GATC 3 cut(s) 414, 543, 694
BspANI GGCC 2 cut(s) 60, 958
BspCNI CTCAG 5 cut(s) 67, 853, 1012, 1093, 1173
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 416, 928, 1198, 1241
BspMAI CTGCAG 2 cut(s) 244, 970
BspPI GGATC 3 cut(s) 409, 422, 538
BspTNI GGTCTC 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 808, 958
BsrI ACTGG 2 cut(s) 444, 1071
BssAI RCCGGY 2 cut(s) 808, 958
BssECI CCNNGG 2 cut(s) 418, 822
BssMI GATC 3 cut(s) 414, 543, 694
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 3 cut(s) 147, 323, 420
Bst4CI ACNGT 6 cut(s) 359, 394, 709, 906, 1055, 1108
Bst6I CTCTTC 2 cut(s) 1055, 1073
BstAPI GCANNNNNTGC 1 cut(s) 919
BstBAI YACGTR 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 5 cut(s) 54, 840, 999, 1101, 1160
BstF5I GGATG 2 cut(s) 1054, 1090
BstHHI GCGC 1 cut(s) 1159
BstKTI GATC 3 cut(s) 417, 546, 697
BstMAI GTCTC 5 cut(s) 365, 428, 587, 621, 1097
BstMBI GATC 3 cut(s) 414, 543, 694
BstMWI GCNNNNNNNGC 2 cut(s) 919, 1178
BstNI CCWGG 3 cut(s) 147, 323, 420
BstSCI CCNGG 3 cut(s) 145, 321, 418
BstSFI CTRYAG 2 cut(s) 240, 966
BstV1I GCAGC 2 cut(s) 388, 856
BstX2I RGATCY 2 cut(s) 414, 543
BstYI RGATCY 2 cut(s) 414, 543
BsuRI GGCC 2 cut(s) 60, 958
BtsCI GGATG 2 cut(s) 1054, 1090
BtsIMutI CAGTG 1 cut(s) 1078
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 1159
Cfr10I RCCGGY 2 cut(s) 808, 958
Cfr13I GGNCC 2 cut(s) 58, 1239
CseI GACGC 1 cut(s) 638
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 2 cut(s) 478, 941
CspAI ACCGGT 1 cut(s) 808
CviAII CATG 4 cut(s) 102, 434, 726, 1114
CviQI GTAC 2 cut(s) 478, 941
DdeI CTNAG 5 cut(s) 54, 840, 999, 1101, 1160
DpnI GATC 3 cut(s) 416, 545, 696
DpnII GATC 3 cut(s) 414, 543, 694
DraIII CACNNNGTG 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 956
Eam1104I CTCTTC 2 cut(s) 1055, 1073
EarI CTCTTC 2 cut(s) 1055, 1073
Eco130I CCWWGG 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 1239
Eco57I CTGAAG 2 cut(s) 1079, 1229
Eco72I CACGTG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 1239
EcoRII CCWGG 3 cut(s) 145, 321, 418
EcoT14I CCWWGG 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 4 cut(s) 105, 437, 729, 1117
FaqI GGGAC 2 cut(s) 722, 1225
FatI CATG 4 cut(s) 101, 433, 725, 1113
Fnu4HI GCNGC 2 cut(s) 402, 845
FokI GGATG 2 cut(s) 1061, 1097
Fsp4HI GCNGC 2 cut(s) 402, 845
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 1158
GluI GCNGC 2 cut(s) 402, 845
GsaI CCCAGC 1 cut(s) 743
HaeIII GGCC 2 cut(s) 60, 958
HapII CCGG 2 cut(s) 809, 959
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 1159
Hin1II CATG 4 cut(s) 105, 437, 729, 1117
Hin6I GCGC 1 cut(s) 1157
HinP1I GCGC 1 cut(s) 1157
HinfI GANTC 5 cut(s) 256, 371, 506, 600, 997
HpaII CCGG 2 cut(s) 809, 959
HphI GGTGA 4 cut(s) 341, 602, 1006, 1129
Hpy166II GTNNAC 1 cut(s) 941
Hpy188I TCNGA 5 cut(s) 511, 778, 1002, 1059, 1163
Hpy188III TCNNGA 4 cut(s) 434, 547, 624, 1251
Hpy8I GTNNAC 1 cut(s) 941
HpyAV CCTTC 8 cut(s) 50, 143, 277, 487, 780, 785, 1184, 1253
HpyCH4III ACNGT 6 cut(s) 359, 394, 709, 906, 1055, 1108
HpyCH4IV ACGT 2 cut(s) 489, 953
HpyCH4V TGCA 4 cut(s) 143, 242, 922, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 919, 1178
HpyF3I CTNAG 5 cut(s) 54, 840, 999, 1101, 1160
HpySE526I ACGT 2 cut(s) 489, 953
Hsp92II CATG 4 cut(s) 105, 437, 729, 1117
HspAI GCGC 1 cut(s) 1157
Kzo9I GATC 3 cut(s) 414, 543, 694
LmnI GCTCC 3 cut(s) 328, 642, 926
Lsp1109I GCAGC 2 cut(s) 388, 856
LweI GCATC 2 cut(s) 462, 629
MabI ACCWGGT 1 cut(s) 321
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 489, 953
MaeIII GTNAC 1 cut(s) 994
MalI GATC 3 cut(s) 416, 545, 696
MboI GATC 3 cut(s) 414, 543, 694
MboII GAAGA 7 cut(s) 28, 286, 877, 1072, 1090, 1199, 1241
MflI RGATCY 2 cut(s) 414, 543
MluCI AATT 9 cut(s) 192, 212, 228, 522, 608, 816, 848, 1011, 1211
MlyI GAGTC 4 cut(s) 250, 365, 594, 991
MseI TTAA 2 cut(s) 579, 660
MspI CCGG 2 cut(s) 809, 959
MspR9I CCNGG 3 cut(s) 147, 323, 420
Mva1269I GAATGC 1 cut(s) 924
MvaI CCWGG 3 cut(s) 147, 323, 420
MwoI GCNNNNNNNGC 2 cut(s) 919, 1178
NdeII GATC 3 cut(s) 414, 543, 694
NlaIII CATG 4 cut(s) 105, 437, 729, 1117
NlaIV GGNNCC 4 cut(s) 416, 928, 1198, 1241
NmuCI GTSAC 1 cut(s) 994
PagI TCATGA 1 cut(s) 433
PctI GAATGC 1 cut(s) 924
PfeI GAWTC 1 cut(s) 506
PinAI ACCGGT 1 cut(s) 808
PkrI GCNGC 2 cut(s) 403, 846
PleI GAGTC 4 cut(s) 250, 365, 594, 991
PmaCI CACGTG 1 cut(s) 490
PmlI CACGTG 1 cut(s) 490
PpsI GAGTC 4 cut(s) 250, 365, 594, 991
Ppu21I YACGTR 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 1239
Psp5II RGGWCCY 1 cut(s) 1239
Psp6I CCWGG 3 cut(s) 145, 321, 418
PspCI CACGTG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 3 cut(s) 145, 321, 418
PspN4I GGNNCC 4 cut(s) 416, 928, 1198, 1241
PspPI GGNCC 2 cut(s) 58, 1239
PspPPI RGGWCCY 1 cut(s) 1239
PstI CTGCAG 2 cut(s) 244, 970
PsuI RGATCY 2 cut(s) 414, 543
RsaI GTAC 2 cut(s) 479, 942
RsaNI GTAC 2 cut(s) 478, 941
SaqAI TTAA 2 cut(s) 579, 660
SatI GCNGC 2 cut(s) 402, 845
Sau3AI GATC 3 cut(s) 414, 543, 694
Sau96I GGNCC 2 cut(s) 58, 1239
SbfI CCTGCAGG 1 cut(s) 244
SchI GAGTC 4 cut(s) 250, 365, 594, 991
ScrFI CCNGG 3 cut(s) 147, 323, 420
SdaI CCTGCAGG 1 cut(s) 244
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 2 cut(s) 462, 629
SfcI CTRYAG 2 cut(s) 240, 966
SinI GGWCC 1 cut(s) 1239
Sse8387I CCTGCAGG 1 cut(s) 244
Sse9I AATT 9 cut(s) 192, 212, 228, 522, 608, 816, 848, 1011, 1211
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 3 cut(s) 145, 321, 418
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 6 cut(s) 359, 394, 709, 906, 1055, 1108
TaiI ACGT 2 cut(s) 492, 956
TasI AATT 9 cut(s) 192, 212, 228, 522, 608, 816, 848, 1011, 1211
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 579, 660
Tru9I TTAA 2 cut(s) 579, 660
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 2 cut(s) 401, 844
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 9 cut(s) 90, 296, 371, 422, 450, 489, 819, 841, 897
TspRI CASTG 1 cut(s) 1078
VpaK11BI GGWCC 1 cut(s) 1239
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 951
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.