Rmu_sc0005080.1_g000004

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005080.1
OG0018631
Physical Location & Seq
Forward (+)
10055 .. 12088
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005080.1_g000004.1.cds

Sequence Viewer

Length: 1374 bp
atggctcagggccacattttgcccatcctagacatagcaaaagtatttgcttcatgtggtgtaaaatcaaccataataaccacccttctcaatgcaccaggcttctccaaacaaatccaaacaagcaaacatttaggttttgaaattgaacctgttgtcaacaagtttccatccgctgaggttggtttgcctgcaggaatagaaagtactcacttggctactacccaagaaatgaaggaaaagttcttcaaagctatcgctctggctgaacaccaggtggagcagattttagagcaatatcaccccaactgtctcgtagcagactctttatttcattgggcaacagttgttgctgccaagtttgggatcccaggtctcatctttcatggaactggtttttttcccctgtgtgcttcaatgagtgtgatgctgtaccaagctcacgtgaaggtttcatctgattcagaaccttttgtaattccaaatctcccagatgagatccagacgacaagaaaccaactaccatcgtttcttaatctaaatggtgagacaggactcatcaaattggtcaaagcatcaagagatgtagaggaaaggagctatgggattttggttaacagcttctatgaacttgaatcagagtatgtagatcattacaggatggtgtttggcaggaagtcatggcacattggcccagcttctctatacaacaaggcagaaaaagataaatcagagaggggaagggaaggctctgttgatgaactggtagaaattgccttgggtcttggggcttctcagcagcaattcgtttgggtggtgaagaaagaaaagaatgatgaaaataagtggttgcctgaacagtttgagcagagaatgcaaggagtctctgctggtgtaccaatgataacgtggccggtgtctacacagcagttttacaatgagaagctggtgactcagatacttggaattggggtttctgttggtgttcaaaagtgggctacatttgaggatgacagtttgaagaataaagcgagtgtgaagagggatgacataatggtgagtgataaaaaagaggaaatgagaagcaaagtttctgcgctcagagatatggcaaggagggcagttgaagaaggtggttcctcattctcccaattagctactcttattgaagatttgagtttctgtttcggaaatcgaagttcgttcttgagaaggactggttataaggcggcgggcatccctgggggttggaggctttttgaccaattgcggatggaactcaagcagtgtcttccggagttccggtggcaacttggcattggggttgctgttgaagttccaaattcggctggatatggaggggaaggagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

457

Amino Acids

50.88

Weight (kDa)

6.12

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1224
AccI GTMKAC 1 cut(s) 920
AccIII TCCGGA 1 cut(s) 1294
AciI CCGC 4 cut(s) 174, 1229, 1232, 1270
AclWI GGATC 3 cut(s) 361, 374, 493
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 1 cut(s) 1342
AcvI CACGTG 1 cut(s) 445
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 3 cut(s) 208, 434, 897
AfiI CCNNNNNNNGG 1 cut(s) 363
AjnI CCWGG 4 cut(s) 97, 273, 370, 1240
AluBI AGCT 7 cut(s) 254, 440, 600, 621, 698, 946, 1157
AluI AGCT 7 cut(s) 254, 440, 600, 621, 698, 946, 1157
Alw26I GTCTC 4 cut(s) 317, 380, 542, 889
AlwI GGATC 3 cut(s) 361, 374, 493
Aor13HI TCCGGA 1 cut(s) 1294
AoxI GGCC 3 cut(s) 10, 691, 911
ApeKI GCWGC 2 cut(s) 353, 799
ApoI RAATTY 1 cut(s) 1342
AspLEI GCGC 1 cut(s) 1099
AspS9I GGNCC 2 cut(s) 10, 692
AsuHPI GGTGA 5 cut(s) 293, 557, 829, 961, 1069
BamHI GGATCC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 1283
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 340, 811
BccI CCATC 5 cut(s) 32, 178, 532, 655, 1267
BciT130I CCWGG 4 cut(s) 99, 275, 372, 1242
BcoDI GTCTC 4 cut(s) 317, 380, 542, 889
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 354, 800, 1230
BlsI GCNGC 3 cut(s) 355, 801, 1231
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 4 cut(s) 99, 275, 372, 1242
BmgT120I GGNCC 2 cut(s) 10, 692
BmiI GGNNCC 2 cut(s) 368, 1138
BmrFI CCNGG 4 cut(s) 99, 275, 372, 1242
BmsI GCATC 3 cut(s) 417, 584, 1245
BpiI GAAGAC 1 cut(s) 1283
Bpu10I CCTNAGC 2 cut(s) 6, 177
BpuEI CTTGAG 2 cut(s) 1228, 1265
BsaAI YACGTR 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 4 cut(s) 370, 777, 1240, 1241
BsaWI WCCGGW 2 cut(s) 1294, 1302
BsaXI ACNNNNNCTCC 2 cut(s) 1289, 1319
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 913
Bse1I ACTGG 3 cut(s) 397, 768, 1222
BseAI TCCGGA 1 cut(s) 1294
BseBI CCWGG 4 cut(s) 99, 275, 372, 1242
BseDI CCNNGG 4 cut(s) 370, 777, 1240, 1241
BseGI GGATG 7 cut(s) 24, 170, 666, 1015, 1051, 1236, 1278
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 5 cut(s) 20, 168, 809, 968, 1114
BseNI ACTGG 3 cut(s) 397, 768, 1222
BseXI GCAGC 2 cut(s) 340, 811
BseYI CCCAGC 1 cut(s) 694
BshFI GGCC 3 cut(s) 12, 693, 913
BsiSI CCGG 3 cut(s) 914, 1295, 1303
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 4 cut(s) 317, 380, 542, 889
BsmI GAATGC 1 cut(s) 879
BsnI GGCC 3 cut(s) 12, 693, 913
Bso31I GGTCTC 1 cut(s) 380
Bsp13I TCCGGA 1 cut(s) 1294
Bsp143I GATC 3 cut(s) 366, 498, 649
BspACI CCGC 4 cut(s) 174, 1229, 1232, 1270
BspANI GGCC 3 cut(s) 12, 693, 913
BspCNI CTCAG 5 cut(s) 19, 169, 808, 967, 1113
BspEI TCCGGA 1 cut(s) 1294
BspLI GGNNCC 2 cut(s) 368, 1138
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 3 cut(s) 361, 374, 493
BspTNI GGTCTC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 913
BsrI ACTGG 3 cut(s) 397, 768, 1222
BssAI RCCGGY 1 cut(s) 913
BssECI CCNNGG 4 cut(s) 370, 777, 1240, 1241
BssMI GATC 3 cut(s) 366, 498, 649
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 4 cut(s) 99, 275, 372, 1242
Bst4CI ACNGT 4 cut(s) 311, 346, 861, 1016
Bst6I CTCTTC 1 cut(s) 1034
BstAPI GCANNNNNTGC 1 cut(s) 874
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 192, 1234
BstDEI CTNAG 5 cut(s) 6, 177, 795, 954, 1100
BstF5I GGATG 7 cut(s) 24, 170, 666, 1015, 1051, 1236, 1278
BstHHI GCGC 1 cut(s) 1099
BstKTI GATC 3 cut(s) 369, 501, 652
BstMAI GTCTC 4 cut(s) 317, 380, 542, 889
BstMBI GATC 3 cut(s) 366, 498, 649
BstMWI GCNNNNNNNGC 2 cut(s) 874, 1118
BstNI CCWGG 4 cut(s) 99, 275, 372, 1242
BstSCI CCNGG 4 cut(s) 97, 273, 370, 1240
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 340, 811
BstV2I GAAGAC 1 cut(s) 1283
BstX2I RGATCY 2 cut(s) 366, 498
BstYI RGATCY 2 cut(s) 366, 498
BsuRI GGCC 3 cut(s) 12, 693, 913
BtsCI GGATG 7 cut(s) 24, 170, 666, 1015, 1051, 1236, 1278
BtsI GCAGTG 1 cut(s) 1292
BtsIMutI CAGTG 1 cut(s) 1292
Cac8I GCNNGC 2 cut(s) 192, 1234
CfoI GCGC 1 cut(s) 1099
Cfr10I RCCGGY 1 cut(s) 913
Cfr13I GGNCC 2 cut(s) 10, 692
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 3 cut(s) 207, 433, 896
CviAII CATG 3 cut(s) 54, 386, 681
CviQI GTAC 3 cut(s) 207, 433, 896
DdeI CTNAG 5 cut(s) 6, 177, 795, 954, 1100
DpnI GATC 3 cut(s) 368, 500, 651
DpnII GATC 3 cut(s) 366, 498, 649
DraIII CACNNNGTG 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 1034
EarI CTCTTC 1 cut(s) 1034
Eco130I CCWWGG 1 cut(s) 777
Eco31I GGTCTC 1 cut(s) 380
Eco72I CACGTG 1 cut(s) 445
EcoRII CCWGG 4 cut(s) 97, 273, 370, 1240
EcoT14I CCWWGG 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 3 cut(s) 57, 389, 684
FatI CATG 3 cut(s) 53, 385, 680
FauI CCCGC 1 cut(s) 1225
FblI GTMKAC 1 cut(s) 920
Fnu4HI GCNGC 3 cut(s) 354, 800, 1230
FokI GGATG 7 cut(s) 11, 157, 673, 1022, 1058, 1223, 1285
Fsp4HI GCNGC 3 cut(s) 354, 800, 1230
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 1098
GluI GCNGC 3 cut(s) 354, 800, 1230
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 3 cut(s) 12, 693, 913
HapII CCGG 3 cut(s) 914, 1295, 1303
HhaI GCGC 1 cut(s) 1099
Hin1II CATG 3 cut(s) 57, 389, 684
Hin6I GCGC 1 cut(s) 1097
HinP1I GCGC 1 cut(s) 1097
HincII GTYRAC 2 cut(s) 160, 616
HindII GTYRAC 2 cut(s) 160, 616
HinfI GANTC 6 cut(s) 323, 461, 555, 635, 882, 952
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 3 cut(s) 914, 1295, 1303
HphI GGTGA 5 cut(s) 293, 557, 829, 961, 1069
Hpy166II GTNNAC 4 cut(s) 160, 616, 896, 921
Hpy188I TCNGA 7 cut(s) 460, 466, 640, 733, 957, 1103, 1190
Hpy188III TCNNGA 4 cut(s) 502, 579, 1207, 1295
Hpy8I GTNNAC 4 cut(s) 160, 616, 896, 921
HpyAV CCTTC 8 cut(s) 95, 229, 442, 735, 740, 1124, 1206, 1358
HpyCH4III ACNGT 4 cut(s) 311, 346, 861, 1016
HpyCH4IV ACGT 2 cut(s) 444, 908
HpyCH4V TGCA 3 cut(s) 95, 194, 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 874, 1118
HpyF3I CTNAG 5 cut(s) 6, 177, 795, 954, 1100
HpySE526I ACGT 2 cut(s) 444, 908
Hsp92II CATG 3 cut(s) 57, 389, 684
HspAI GCGC 1 cut(s) 1097
Kpn2I TCCGGA 1 cut(s) 1294
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 3 cut(s) 366, 498, 649
LmnI GCTCC 2 cut(s) 280, 597
Lsp1109I GCAGC 2 cut(s) 340, 811
LweI GCATC 3 cut(s) 417, 584, 1245
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 444, 908
MaeIII GTNAC 1 cut(s) 949
MalI GATC 3 cut(s) 368, 500, 651
MboI GATC 3 cut(s) 366, 498, 649
MboII GAAGA 7 cut(s) 238, 832, 1033, 1051, 1139, 1181, 1283
MfeI CAATTG 1 cut(s) 1265
MflI RGATCY 2 cut(s) 366, 498
MluCI AATT 9 cut(s) 144, 477, 563, 771, 803, 966, 1151, 1265, 1342
MlyI GAGTC 4 cut(s) 317, 549, 891, 946
MmeI TCCRAC 1 cut(s) 1229
MroI TCCGGA 1 cut(s) 1294
MseI TTAA 2 cut(s) 534, 615
MslI CAYNNNNRTG 1 cut(s) 1055
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 3 cut(s) 914, 1295, 1303
MspR9I CCNGG 4 cut(s) 99, 275, 372, 1242
MunI CAATTG 1 cut(s) 1265
Mva1269I GAATGC 1 cut(s) 879
MvaI CCWGG 4 cut(s) 99, 275, 372, 1242
MwoI GCNNNNNNNGC 2 cut(s) 874, 1118
NdeII GATC 3 cut(s) 366, 498, 649
NlaIII CATG 3 cut(s) 57, 389, 684
NlaIV GGNNCC 2 cut(s) 368, 1138
NmuCI GTSAC 1 cut(s) 949
PasI CCCWGGG 1 cut(s) 1241
PctI GAATGC 1 cut(s) 879
PfeI GAWTC 2 cut(s) 461, 635
PkrI GCNGC 3 cut(s) 355, 801, 1231
PleI GAGTC 4 cut(s) 317, 549, 890, 946
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 4 cut(s) 317, 549, 890, 946
Ppu21I YACGTR 1 cut(s) 445
PsiI TTATAA 1 cut(s) 1224
Psp6I CCWGG 4 cut(s) 97, 273, 370, 1240
PspCI CACGTG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 694
PspGI CCWGG 4 cut(s) 97, 273, 370, 1240
PspN4I GGNNCC 2 cut(s) 368, 1138
PspPI GGNCC 2 cut(s) 10, 692
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 2 cut(s) 366, 498
RsaI GTAC 3 cut(s) 208, 434, 897
RsaNI GTAC 3 cut(s) 207, 433, 896
RseI CAYNNNNRTG 1 cut(s) 1055
SaqAI TTAA 2 cut(s) 534, 615
SatI GCNGC 3 cut(s) 354, 800, 1230
Sau3AI GATC 3 cut(s) 366, 498, 649
Sau96I GGNCC 2 cut(s) 10, 692
SbfI CCTGCAGG 1 cut(s) 196
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 4 cut(s) 317, 549, 891, 946
ScrFI CCNGG 4 cut(s) 99, 275, 372, 1242
SdaI CCTGCAGG 1 cut(s) 196
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 3 cut(s) 417, 584, 1245
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 2 cut(s) 1207, 1280
SmoI CTYRAG 2 cut(s) 1207, 1280
Sse8387I CCTGCAGG 1 cut(s) 196
Sse9I AATT 9 cut(s) 144, 477, 563, 771, 803, 966, 1151, 1265, 1342
SsiI CCGC 4 cut(s) 174, 1229, 1232, 1270
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 4 cut(s) 97, 273, 370, 1240
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 4 cut(s) 311, 346, 861, 1016
TaiI ACGT 2 cut(s) 447, 911
TaqI TCGA 1 cut(s) 1195
TasI AATT 9 cut(s) 144, 477, 563, 771, 803, 966, 1151, 1265, 1342
TatI WGTACW 1 cut(s) 206
TauI GCSGC 1 cut(s) 1232
TfiI GAWTC 2 cut(s) 461, 635
Tru1I TTAA 2 cut(s) 534, 615
Tru9I TTAA 2 cut(s) 534, 615
TscAI CASTG 1 cut(s) 1292
TseFI GTSAC 1 cut(s) 949
TseI GCWGC 2 cut(s) 353, 799
Tsp45I GTSAC 1 cut(s) 949
TspDTI ATGAA 8 cut(s) 42, 248, 323, 374, 444, 642, 774, 852
TspRI CASTG 1 cut(s) 1292
XapI RAATTY 1 cut(s) 1342
XcmI CCANNNNNNNNNTGG 1 cut(s) 906
XmiI GTMKAC 1 cut(s) 920
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.