RchiOBHm_Chr6g0260191

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017822
Physical Location & Seq
Forward (+)
15289883 .. 15290875
993 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGGAATATGTGGATTTGCAAGTCATTGTTTTGAAGACGTTTGACAGGTTAACAGTAGTTAAATTCTTAAGTACATGCTCTTTGTCATATCAGAGTAGGGGAAAATCATCAATGGATGTAACCTCTGATAAATTACTTAATAGTGAGTCTTTGACGAATGAACATTCGGTTGTGGTTCTTGAGAATCTGAGAAAGTACAGTCTGTTTTTTGTGAAAGCTCTCCATGTCTCTTCTCCTCTTGCAGTTAAAGTAACTGCGCTGGATTGGGTACAAAGATTTTGTGAGAATGTTATTGCTTTTAATGAGAAATCAGACACAGAAACTCGTTTCTATGAAGTGTATGGTAATGATAGAATTATTGGGAACATGCTTTACTCAATTCTGGATGCTTTACTCAATGCTTTACCAAAAGTGAGGTCACATGTTGCAATAGTATTGGAGCTGTTACTCCAGGCAAGGCTTGTACATCCTGTTTACTTTTATAGCATGGCTGAAGTGGTGTTGGGTAAACTCGGTGATCCTGATAATGATATAAAAAATGCATTTGTTAGACTGCTTGCTATTGTTGTACCTACTACATTGTATGCATGTGGGCTTCATGATTATTGGACATCTTCTTCATCTAGGGCTGGTGCTGTTCAGGTAGGCAACAGTTCTAACATGCAGTGGAAGCAAGTGTTTTCCTTGAAGCAGCTCCCTCAGCAACTTCACTCACAACAACTAGTGACCATATTGAGTTACATATCCCAAAGATGGAGGGTGCCTCTTTCTTCTTGGATCCAACGGCTTATTCATAGCTGCAGAAGTTCAAAAGACCTTGTTGCACGTCAACTCGAGGAAACAGGAAATGTCGCCACTGGTGTGTGGTTGGACATTAAAGTGGATGATGGTTTTCTTGAAAAACATTGCTCAGTAAATAATCTGGCTGGTGCTTGGTGGGCTGTCCAAGAAGCTGCTAGATATTGTATTTCCACACGGCCGGCTTCGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

330

Amino Acids

37.28

Weight (kDa)

8.15

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 760
AclWI GGATC 3 cut(s) 512, 772, 785
AcoI YGGCCR 1 cut(s) 977
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 5 cut(s) 73, 197, 270, 465, 570
AfiI CCNNNNNNNGG 1 cut(s) 753
AflII CTTAAG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 4 cut(s) 34, 688, 810, 899
AhlI ACTAGT 1 cut(s) 721
AjiI CACGTC 1 cut(s) 827
AjnI CCWGG 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AleI CACNNNNGTG 1 cut(s) 860
AluBI AGCT 5 cut(s) 218, 442, 694, 798, 953
AluI AGCT 5 cut(s) 218, 442, 694, 798, 953
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 3 cut(s) 512, 772, 785
Ama87I CYCGRG 1 cut(s) 833
AoxI GGCC 1 cut(s) 977
ApeKI GCWGC 3 cut(s) 691, 798, 953
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspLEI GCGC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 833
BamHI GGATCC 1 cut(s) 777
BanI GGYRCC 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 703, 785, 940
BccI CCATC 2 cut(s) 747, 881
BceAI ACGGC 1 cut(s) 800
BciT130I CCWGG 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 3 cut(s) 624, 722, 957
BfmI CTRYAG 1 cut(s) 799
BfrI CTTAAG 1 cut(s) 67
BisI GCNGC 3 cut(s) 692, 799, 954
BlsI GCNGC 3 cut(s) 693, 800, 955
Bme1390I CCNGG 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 833
BmgBI CACGTC 1 cut(s) 827
BmiI GGNNCC 2 cut(s) 762, 779
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 748, 780
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 753
Bse118I RCCGGY 1 cut(s) 979
Bse1I ACTGG 1 cut(s) 862
Bse3DI GCAATG 1 cut(s) 904
BseBI CCWGG 1 cut(s) 452
BseGI GGATG 4 cut(s) 121, 391, 466, 889
BseLI CCNNNNNNNGG 1 cut(s) 753
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 3 cut(s) 179, 713, 924
BseNI ACTGG 1 cut(s) 862
BseRI GAGGAG 1 cut(s) 225
BseX3I CGGCCG 1 cut(s) 977
BseXI GCAGC 3 cut(s) 703, 785, 940
Bsh1285I CGRYCG 1 cut(s) 980
BshFI GGCC 1 cut(s) 979
BshNI GGYRCC 1 cut(s) 760
BsiEI CGRYCG 1 cut(s) 980
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 1 cut(s) 980
BslI CCNNNNNNNGG 1 cut(s) 753
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 979
BsoBI CYCGRG 1 cut(s) 833
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 2 cut(s) 517, 777
BspANI GGCC 1 cut(s) 979
BspCNI CTCAG 3 cut(s) 180, 712, 923
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 762, 779
BspMAI CTGCAG 1 cut(s) 803
BspPI GGATC 3 cut(s) 512, 772, 785
BspT107I GGYRCC 1 cut(s) 760
BspTI CTTAAG 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 1 cut(s) 979
BsrGI TGTACA 1 cut(s) 463
BsrI ACTGG 1 cut(s) 862
BssAI RCCGGY 1 cut(s) 979
BssMI GATC 2 cut(s) 517, 777
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 3 cut(s) 55, 200, 653
Bst6I CTCTTC 1 cut(s) 235
BstAFI CTTAAG 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 558, 981
BstDEI CTNAG 3 cut(s) 188, 699, 910
BstF5I GGATG 4 cut(s) 121, 391, 466, 889
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 2 cut(s) 520, 780
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 517, 777
BstMCI CGRYCG 1 cut(s) 980
BstMWI GCNNNNNNNGC 3 cut(s) 670, 700, 938
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 5 cut(s) 78, 370, 425, 591, 664
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 799
BstV1I GCAGC 3 cut(s) 703, 785, 940
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 777
BstYI RGATCY 1 cut(s) 777
BstZI CGGCCG 1 cut(s) 977
BsuRI GGCC 1 cut(s) 979
BtrI CACGTC 1 cut(s) 827
BtsCI GGATG 4 cut(s) 121, 391, 466, 889
BtsI GCAGTG 1 cut(s) 671
BtsIMutI CAGTG 2 cut(s) 671, 855
Cac8I GCNNGC 2 cut(s) 558, 981
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 979
Csp6I GTAC 5 cut(s) 72, 196, 269, 464, 569
CviAII CATG 8 cut(s) 75, 224, 367, 422, 487, 588, 599, 661
CviQI GTAC 5 cut(s) 72, 196, 269, 464, 569
DdeI CTNAG 3 cut(s) 188, 699, 910
DpnI GATC 2 cut(s) 519, 779
DpnII GATC 2 cut(s) 517, 777
EaeI YGGCCR 1 cut(s) 977
EagI CGGCCG 1 cut(s) 977
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
EclXI CGGCCG 1 cut(s) 977
Eco52I CGGCCG 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 450
EcoT22I ATGCAT 2 cut(s) 544, 589
FaeI CATG 8 cut(s) 78, 227, 370, 425, 490, 591, 602, 664
FatI CATG 8 cut(s) 74, 223, 366, 421, 486, 587, 598, 660
Fnu4HI GCNGC 3 cut(s) 692, 799, 954
FokI GGATG 4 cut(s) 128, 398, 453, 896
Fsp4HI GCNGC 3 cut(s) 692, 799, 954
FspBI CTAG 3 cut(s) 624, 722, 957
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 692, 799, 954
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 979
HapII CCGG 1 cut(s) 980
HhaI GCGC 1 cut(s) 259
Hin1II CATG 8 cut(s) 78, 227, 370, 425, 490, 591, 602, 664
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 2 cut(s) 51, 830
HindII GTYRAC 2 cut(s) 51, 830
HinfI GANTC 2 cut(s) 146, 184
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 1 cut(s) 980
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 4 cut(s) 51, 475, 509, 830
Hpy188I TCNGA 5 cut(s) 93, 127, 189, 313, 988
Hpy188III TCNNGA 5 cut(s) 179, 383, 521, 599, 896
Hpy8I GTNNAC 4 cut(s) 51, 475, 509, 830
HpyCH4III ACNGT 3 cut(s) 55, 200, 653
HpyCH4IV ACGT 2 cut(s) 38, 826
HpyCH4V TGCA 8 cut(s) 19, 242, 428, 542, 587, 664, 801, 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 670, 700, 938
HpyF3I CTNAG 3 cut(s) 188, 699, 910
HpySE526I ACGT 2 cut(s) 38, 826
Hsp92II CATG 8 cut(s) 78, 227, 370, 425, 490, 591, 602, 664
HspAI GCGC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 979
KroNI GCCGGC 1 cut(s) 981
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 517, 777
LmnI GCTCC 2 cut(s) 439, 699
Lsp1109I GCAGC 3 cut(s) 703, 785, 940
LweI GCATC 1 cut(s) 376
MaeI CTAG 3 cut(s) 624, 722, 957
MaeII ACGT 2 cut(s) 38, 826
MaeIII GTNAC 6 cut(s) 118, 250, 417, 444, 724, 737
MalI GATC 2 cut(s) 519, 779
MboI GATC 2 cut(s) 517, 777
MboII GAAGA 5 cut(s) 46, 222, 606, 609, 762
MflI RGATCY 1 cut(s) 777
MluCI AATT 4 cut(s) 62, 131, 354, 378
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 2 cut(s) 805, 849
MnlI CCTC 7 cut(s) 133, 246, 408, 708, 750, 774, 829
Mph1103I ATGCAT 2 cut(s) 544, 589
MroNI GCCGGC 1 cut(s) 979
MseI TTAA 7 cut(s) 50, 60, 68, 138, 246, 300, 876
MslI CAYNNNNRTG 2 cut(s) 860, 878
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 1 cut(s) 980
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 670, 700, 938
NaeI GCCGGC 1 cut(s) 981
NdeII GATC 2 cut(s) 517, 777
NgoMIV GCCGGC 1 cut(s) 979
NlaIII CATG 8 cut(s) 78, 227, 370, 425, 490, 591, 602, 664
NlaIV GGNNCC 2 cut(s) 762, 779
NmuCI GTSAC 2 cut(s) 417, 724
NsiI ATGCAT 2 cut(s) 544, 589
NspI RCATGY 5 cut(s) 78, 370, 425, 591, 664
OliI CACNNNNGTG 1 cut(s) 860
PaeR7I CTCGAG 1 cut(s) 833
PagI TCATGA 1 cut(s) 598
PciI ACATGT 1 cut(s) 421
PdiI GCCGGC 1 cut(s) 981
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 693, 800, 955
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PscI ACATGT 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 762, 779
PspXI VCTCGAGB 1 cut(s) 833
PsrI GAACNNNNNNTAC 2 cut(s) 356, 388
PstI CTGCAG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 777
RsaI GTAC 5 cut(s) 73, 197, 270, 465, 570
RsaNI GTAC 5 cut(s) 72, 196, 269, 464, 569
RseI CAYNNNNRTG 2 cut(s) 860, 878
SaqAI TTAA 7 cut(s) 50, 60, 68, 138, 246, 300, 876
SatI GCNGC 3 cut(s) 692, 799, 954
Sau3AI GATC 2 cut(s) 517, 777
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 452
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 799
Sfr274I CTCGAG 1 cut(s) 833
SlaI CTCGAG 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 860, 878
SmlI CTYRAG 3 cut(s) 67, 179, 833
SmoI CTYRAG 3 cut(s) 67, 179, 833
SpeI ACTAGT 1 cut(s) 721
Sse9I AATT 4 cut(s) 62, 131, 354, 378
SspMI CTAG 3 cut(s) 624, 722, 957
StyD4I CCNGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 55, 200, 653
TaiI ACGT 2 cut(s) 41, 829
TaqI TCGA 1 cut(s) 834
TasI AATT 4 cut(s) 62, 131, 354, 378
TatI WGTACW 3 cut(s) 71, 195, 463
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 7 cut(s) 50, 60, 68, 138, 246, 300, 876
Tru9I TTAA 7 cut(s) 50, 60, 68, 138, 246, 300, 876
TscAI CASTG 2 cut(s) 671, 862
TseFI GTSAC 2 cut(s) 417, 724
TseI GCWGC 3 cut(s) 691, 798, 953
Tsp45I GTSAC 2 cut(s) 417, 724
TspDTI ATGAA 5 cut(s) 174, 348, 587, 609, 782
TspRI CASTG 2 cut(s) 671, 862
Vha464I CTTAAG 1 cut(s) 67
XapI RAATTY 1 cut(s) 62
XceI RCATGY 5 cut(s) 78, 370, 425, 591, 664
XhoI CTCGAG 1 cut(s) 833
XspI CTAG 3 cut(s) 624, 722, 957
Zsp2I ATGCAT 2 cut(s) 544, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.