Rh6AG109900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017822
Physical Location & Seq
Forward (+)
16036429 .. 16037028
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG109900.1

Sequence Viewer

Length: 600 bp
ATGGAATATGTGGATTTGCAAGTCAATGTTTTGAGGATGTTTGACAGGCTAACAGTAGTTAAGAAAAGTACCTGCTCTTTGTCATATCAGAGTAGTGGCAAATCATCAATGGATGGTACCTCTGATAAATTATTTAATAGTGAGTCTTTGACCTATGAACATTCGGTTGTGGTTGTTGAGAATCTGAGAAAGTACAGTCTGTTTTTTGTGAAAGCTCTCCATGCTCTTCTCCTCTTGCAGTTATTTAAAGTAAATGTGCTGGATTTGGTACAAAGATTTTGTGAGAATGTTATTGTTTTTAATGAGAAATCAGACACAGAAACTTGTTTCTATGAAGTGTATGGTAATGATAGAATTATTGGGAGCATGCTTTACTCAATTCTGGATGCTGCATCTGATAGGGAACCAAAAGTGAGGTCACATGTTGCAATAGTATTGGAGCTGTTACTACAGGCAAGGCTTGTACATCCTCTTTACTTTTATTGCATGGCTGAAGTGGTGTTGGGTAAACTCGGTGATCCTGATAATGATATAAAAAATGCATTTGTTAGACTGCTTGCTATTGTTGTACCCTACATTGTATGCATGTGGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

199

Amino Acids

22.71

Weight (kDa)

5.81

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AclWI GGATC 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 6 cut(s) 70, 118, 194, 270, 465, 570
AflIII ACRYGT 1 cut(s) 421
AluBI AGCT 2 cut(s) 215, 442
AluI AGCT 2 cut(s) 215, 442
AlwI GGATC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp718I GGTACC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 527
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 118, 405
BmsI GCATC 2 cut(s) 376, 401
BseGI GGATG 4 cut(s) 42, 118, 391, 466
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 1 cut(s) 517
BspCNI CTCAG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 596
BspLI GGNNCC 2 cut(s) 118, 405
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 512
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 463
BssMI GATC 1 cut(s) 517
Bst4CI ACNGT 2 cut(s) 55, 197
Bst6I CTCTTC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 368, 558
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 4 cut(s) 42, 118, 391, 466
BstKTI GATC 1 cut(s) 520
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNSI RCATGY 3 cut(s) 370, 425, 589
BstSFI CTRYAG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 376
BtsCI GGATG 4 cut(s) 42, 118, 391, 466
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 368, 558
CciI TCATGA 1 cut(s) 596
Csp6I GTAC 6 cut(s) 69, 117, 193, 269, 464, 569
CviAII CATG 6 cut(s) 221, 367, 422, 487, 586, 597
CviJI RGCY 6 cut(s) 49, 215, 442, 460, 491, 593
CviKI_1 RGCY 6 cut(s) 49, 215, 442, 460, 491, 593
CviQI GTAC 6 cut(s) 69, 117, 193, 269, 464, 569
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 513
EcoT22I ATGCAT 2 cut(s) 544, 587
FaeI CATG 6 cut(s) 224, 370, 425, 490, 589, 600
FatI CATG 6 cut(s) 220, 366, 421, 486, 585, 596
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 4 cut(s) 49, 125, 398, 453
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
Hin1II CATG 6 cut(s) 224, 370, 425, 490, 589, 600
HinfI GANTC 2 cut(s) 143, 181
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 5 cut(s) 90, 124, 186, 313, 397
Hpy188III TCNNGA 3 cut(s) 383, 521, 597
Hpy8I GTNNAC 1 cut(s) 509
HpyCH4III ACNGT 2 cut(s) 55, 197
HpyCH4V TGCA 7 cut(s) 19, 238, 392, 428, 486, 542, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 6 cut(s) 224, 370, 425, 490, 589, 600
KpnI GGTACC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 517
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 363, 439
LpnPI CCDG 6 cut(s) 31, 85, 245, 368, 437, 534
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 2 cut(s) 376, 401
MaeIII GTNAC 2 cut(s) 417, 444
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 1 cut(s) 218
MluCI AATT 3 cut(s) 128, 354, 378
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 5 cut(s) 27, 130, 242, 408, 480
Mph1103I ATGCAT 2 cut(s) 544, 587
MseI TTAA 4 cut(s) 60, 135, 246, 300
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 517
NlaIII CATG 6 cut(s) 224, 370, 425, 490, 589, 600
NlaIV GGNNCC 2 cut(s) 118, 405
NmuCI GTSAC 1 cut(s) 417
NsiI ATGCAT 2 cut(s) 544, 587
NspI RCATGY 3 cut(s) 370, 425, 589
PaeI GCATGC 1 cut(s) 370
PagI TCATGA 1 cut(s) 596
PciI ACATGT 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PscI ACATGT 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 118, 405
RsaI GTAC 6 cut(s) 70, 118, 194, 270, 465, 570
RsaNI GTAC 6 cut(s) 69, 117, 193, 269, 464, 569
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 4 cut(s) 60, 135, 246, 300
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 1 cut(s) 517
SchI GAGTC 1 cut(s) 152
SetI ASST 6 cut(s) 74, 122, 155, 217, 419, 444
SfaNI GCATC 2 cut(s) 376, 401
SfcI CTRYAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 370
Sse9I AATT 3 cut(s) 128, 354, 378
TaaI ACNGT 2 cut(s) 55, 197
TasI AATT 3 cut(s) 128, 354, 378
TatI WGTACW 2 cut(s) 192, 463
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 4 cut(s) 60, 135, 246, 300
Tru9I TTAA 4 cut(s) 60, 135, 246, 300
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 3 cut(s) 171, 348, 585
XceI RCATGY 3 cut(s) 370, 425, 589
Zsp2I ATGCAT 2 cut(s) 544, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.