Rh6AG108800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017822
Physical Location & Seq
Forward (+)
15851130 .. 15852356
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG108800.1

Sequence Viewer

Length: 1227 bp
ATGCAAGTCATGGAACCCCACAACACTTCCGAATGCTGCTTGCGTTGCTTTCTTGCTTTTCAACAGTATTGCAGTCCACTAATGAATCTACTTGAACAAATTACTGAACCCCTTAGCAGAATTATTCCTCGGTTGTTGGGATGTTTATCTATGGTTGGAAGGAAATTTGGGTGGTTGGAATGGATTGGGGATTCATGGAAGTGTCTGACTCTGCTGGCAGAAATTTTGTGTGAAAGATTTTCCACCTTTTATGCACTTGCAGTTGATATTTTATTTCAAAGTTTGGAAGTGGACAATAGCAACCAAGCAGTGGGTACTAGAAGAATTACCTCCTTCCAAGTTCATGGAGTTTTAAAAACTAATCTCCAATTATTATCCTTGCTTCTCCCAATCTCTGTGCAGAAAATACTGCAATTTGATGCTCCAATCTCTCAGTTGCGTTTGTGTCCTAATCACTTGGTAACAGGCAGTTCGGCTGCCACTTATATATTCTTGCTTCAACACGGGAATAATGAAGTTGTTGAACAAGCACTGACTTCGTTAACAGAGGAGCTGGAGTTATTAAAAGCGATGCTGGAGAAAGCCCTGGGCCATGACGATGGGGTTCTTGCATGTTCTAAAACATATTCAAAACATGAATTGTTTGCATTGATTAAATTTGATTTGAAGGTTCTGCTGTCATGTGTTTTCTTAAGTGGGGGTAATAATTATAGTTTGATTGGCCAACCAGACATTGCAACCCTATATCTTATGAGGTCAGAAAAGTTGGTAGAGTTTATTATTGAGAAATTTAATCCTTTTGACTTGCCTATTATGGAATATGTGGATTTGCAAGTCAATGTTTTGAGGATGTTTGACAGGCTAACAGTAGTTAAGAAAAGTACCTGCTCTTTGTCATATCAGAGTAGTGGCAAATCATCAATGGATGGTACCTCTGATAAATTATTTAATAGTGAGTCTTTGACCTATGAACATTCGGTTGTGGTTGTTGAGAATCTGAGAAAGTACAGTCTGTTTTTTGTGAAAGCTCTCCATGCTCTTCTCCTCTTGCAGTTATTTAAAGTAAATGTGCTGGATTTGGTACAAAGATTTTGTGAGAATGTTATTGTTTTTAATGAGAAATCAGACACAGAAACTGTTTCTATGAAGTGTATGGTAATGATAGAATTATTGGGAGCATGCTTTACTCAATTCTGGATGCTGCATCTGATAGGGAACCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

408

Amino Acids

46.32

Weight (kDa)

5.89

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 893
Acc65I GGTACC 1 cut(s) 929
AccB1I GGYRCC 1 cut(s) 929
AccB7I CCANNNNNTGG 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 4 cut(s) 164, 222, 656, 788
AfaI GTAC 5 cut(s) 316, 883, 931, 1007, 1083
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 691
AgsI TTSAA 7 cut(s) 62, 95, 278, 500, 524, 630, 667
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 2 cut(s) 553, 1028
AluI AGCT 2 cut(s) 553, 1028
AlwNI CAGNNNCTG 1 cut(s) 1136
AoxI GGCC 2 cut(s) 589, 721
ApeKI GCWGC 3 cut(s) 36, 476, 1201
ApoI RAATTY 4 cut(s) 164, 222, 656, 788
Asp718I GGTACC 1 cut(s) 929
AspS9I GGNCC 1 cut(s) 589
BalI TGGCCA 1 cut(s) 723
BanI GGYRCC 1 cut(s) 929
BbvI GCAGC 3 cut(s) 23, 463, 1188
BccI CCATC 2 cut(s) 593, 920
BcgI CGANNNNNNTGC 2 cut(s) 519, 553
BciT130I CCWGG 1 cut(s) 587
BfaI CTAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 691
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 3 cut(s) 37, 477, 1202
BlsI GCNGC 3 cut(s) 38, 478, 1203
Bme1390I CCNGG 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 589
BmiI GGNNCC 3 cut(s) 15, 931, 1217
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 4 cut(s) 409, 561, 1188, 1213
BpmI CTGGAG 2 cut(s) 575, 596
Bpu10I CCTNAGC 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 128, 585, 586
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 145
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 3 cut(s) 128, 585, 586
BseGI GGATG 4 cut(s) 146, 855, 931, 1203
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 2 cut(s) 446, 989
BseRI GAGGAG 2 cut(s) 563, 1034
BseXI GCAGC 3 cut(s) 23, 463, 1188
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 2 cut(s) 591, 723
BshNI GGYRCC 1 cut(s) 929
BslI CCNNNNNNNGG 1 cut(s) 310
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 2 cut(s) 591, 723
BspANI GGCC 2 cut(s) 591, 723
BspCNI CTCAG 2 cut(s) 445, 990
BspLI GGNNCC 3 cut(s) 15, 931, 1217
BspMI ACCTGC 1 cut(s) 893
BspQI GCTCTTC 1 cut(s) 1044
BspT107I GGYRCC 1 cut(s) 929
BspTI CTTAAG 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 732
BssECI CCNNGG 3 cut(s) 128, 585, 586
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 4 cut(s) 66, 868, 1010, 1138
Bst6I CTCTTC 1 cut(s) 1044
BstAFI CTTAAG 1 cut(s) 691
BstC8I GCNNGC 3 cut(s) 41, 216, 1180
BstDEI CTNAG 3 cut(s) 113, 432, 998
BstF5I GGATG 4 cut(s) 146, 855, 931, 1203
BstMWI GCNNNNNNNGC 2 cut(s) 45, 1034
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 2 cut(s) 615, 1182
BstSCI CCNGG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 23, 463, 1188
BstXI CCANNNNNNTGG 2 cut(s) 344, 599
BsuRI GGCC 2 cut(s) 591, 723
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 4 cut(s) 146, 855, 931, 1203
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 530
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 3 cut(s) 41, 216, 1180
CaiI CAGNNNCTG 1 cut(s) 1136
Cfr13I GGNCC 1 cut(s) 589
Csp6I GTAC 5 cut(s) 315, 882, 930, 1006, 1082
CviAII CATG 9 cut(s) 10, 195, 344, 593, 612, 635, 681, 1034, 1179
CviJI RGCY 7 cut(s) 476, 553, 584, 591, 723, 862, 1028
CviKI_1 RGCY 7 cut(s) 476, 553, 584, 591, 723, 862, 1028
CviQI GTAC 5 cut(s) 315, 882, 930, 1006, 1082
DdeI CTNAG 3 cut(s) 113, 432, 998
DraI TTTAAA 2 cut(s) 354, 1060
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
EcoRII CCWGG 1 cut(s) 585
FaeI CATG 9 cut(s) 13, 198, 347, 596, 615, 638, 684, 1037, 1182
FatI CATG 9 cut(s) 9, 194, 343, 592, 611, 634, 680, 1033, 1178
Fnu4HI GCNGC 3 cut(s) 37, 477, 1202
FokI GGATG 4 cut(s) 153, 862, 938, 1210
Fsp4HI GCNGC 3 cut(s) 37, 477, 1202
FspBI CTAG 1 cut(s) 318
GluI GCNGC 3 cut(s) 37, 477, 1202
GsuI CTGGAG 2 cut(s) 575, 596
HaeIII GGCC 2 cut(s) 591, 723
Hin1II CATG 9 cut(s) 13, 198, 347, 596, 615, 638, 684, 1037, 1182
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 5 cut(s) 85, 191, 208, 956, 994
HpaI GTTAAC 1 cut(s) 543
Hpy166II GTNNAC 3 cut(s) 77, 292, 543
Hpy188I TCNGA 8 cut(s) 31, 207, 760, 903, 937, 999, 1126, 1209
Hpy188III TCNNGA 1 cut(s) 1195
Hpy8I GTNNAC 3 cut(s) 77, 292, 543
HpyAV CCTTC 3 cut(s) 153, 343, 661
HpyCH4III ACNGT 4 cut(s) 66, 868, 1010, 1138
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 1034
HpyF3I CTNAG 3 cut(s) 113, 432, 998
Hsp92II CATG 9 cut(s) 13, 198, 347, 596, 615, 638, 684, 1037, 1182
KpnI GGTACC 1 cut(s) 933
KspAI GTTAAC 1 cut(s) 543
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 3 cut(s) 427, 550, 1175
Lsp1109I GCAGC 3 cut(s) 23, 463, 1188
LweI GCATC 4 cut(s) 409, 561, 1188, 1213
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 460
MboII GAAGA 2 cut(s) 333, 1031
MlsI TGGCCA 1 cut(s) 723
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 2 cut(s) 202, 965
MmeI TCCRAC 2 cut(s) 136, 156
MnlI CCTC 7 cut(s) 138, 340, 541, 747, 840, 943, 1055
Mox20I TGGCCA 1 cut(s) 723
MscI TGGCCA 1 cut(s) 723
MslI CAYNNNNRTG 2 cut(s) 199, 597
Msp20I TGGCCA 1 cut(s) 723
MspCI CTTAAG 1 cut(s) 691
MspR9I CCNGG 1 cut(s) 587
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 2 cut(s) 45, 1034
NlaIII CATG 9 cut(s) 13, 198, 347, 596, 615, 638, 684, 1037, 1182
NlaIV GGNNCC 3 cut(s) 15, 931, 1217
NspI RCATGY 2 cut(s) 615, 1182
PaeI GCATGC 1 cut(s) 1182
PasI CCCWGGG 1 cut(s) 586
PciSI GCTCTTC 1 cut(s) 1044
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 85, 191, 994
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 3 cut(s) 38, 478, 1203
PleI GAGTC 2 cut(s) 202, 964
PpsI GAGTC 2 cut(s) 202, 964
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 3 cut(s) 15, 931, 1217
PspPI GGNCC 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 1136
RsaI GTAC 5 cut(s) 316, 883, 931, 1007, 1083
RsaNI GTAC 5 cut(s) 315, 882, 930, 1006, 1082
RseI CAYNNNNRTG 2 cut(s) 199, 597
SapI GCTCTTC 1 cut(s) 1044
SatI GCNGC 3 cut(s) 37, 477, 1202
Sau96I GGNCC 1 cut(s) 589
SchI GAGTC 2 cut(s) 202, 965
ScrFI CCNGG 1 cut(s) 587
SetI ASST 9 cut(s) 248, 332, 555, 672, 758, 887, 935, 968, 1030
SfaNI GCATC 4 cut(s) 409, 561, 1188, 1213
SmiMI CAYNNNNRTG 2 cut(s) 199, 597
SmlI CTYRAG 1 cut(s) 691
SmoI CTYRAG 1 cut(s) 691
SphI GCATGC 1 cut(s) 1182
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 585
TaaI ACNGT 4 cut(s) 66, 868, 1010, 1138
TatI WGTACW 1 cut(s) 1005
TfiI GAWTC 3 cut(s) 85, 191, 994
TscAI CASTG 2 cut(s) 315, 537
TseI GCWGC 3 cut(s) 36, 476, 1201
TspDTI ATGAA 7 cut(s) 98, 183, 332, 528, 651, 984, 1160
TspRI CASTG 2 cut(s) 315, 537
Van91I CCANNNNNTGG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 691
XapI RAATTY 4 cut(s) 164, 222, 656, 788
XceI RCATGY 2 cut(s) 615, 1182
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.