Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333753.1

Orthogroup ID

OG0017822

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 974

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 973 bp

atggttggaaggaaatttgggtggttggaatggattggggattcatggaagtgtctgactctgctggcagaaattttttgtgaaagattttccaccttttatgcacttgcagttgatattttatttcaaagtttggaagtggacaatagtaaccaagcagtgggaactggaagaattagctccttccaagttcatggagtattaaaaactaatctccaattattatctttgcagaagtctgggcttctcccaatctctgtgcagaaaatactgcaatttgatgctccaatctctcagttgcgtttgcatcctaatcacttggtaacaggcagttcggctgccacttatatatttttgcttcaacatgggaataatgaagttgttgaacaagcactgacttcattaacagaggagctggagtcattaaaagggatgctggagaatgccctgggccatgacgatggggttcttgcatgttctaaaacatattcaaaacgtgaattgtttgcattgattaaatttgatttgaaggttcttctgtcatgtgttttcttcagtgggggtaatagttatagtttgattggccaaccagacattgcaaccctatatcttatgaagtcagaaaagttggtagagtttattattgagaaatttaatccttttgacttgcctattatggaatatgtggatttgcaagtcagtgttttgaagacgtttgacaggttaacagtagttaaattcttaagtacctgctctttgtcatgtcagagtagtggaaaatcatcaatggatgtaacctctgataaattacttaatagtgagtctttgacgaatgaacattcggttgtggttgttgagaatctgagaaagtacagtctgttttttgtgaaagctctccatgtctcttctcctcttgcagttaaagtaactgcgctggattgggtacaaagattttgtgagaatgttattgctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

324

Amino Acids

36.15

Weight (kDa)

5.83

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017822)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259981 RchiOBHm_Chr6g0260191
rosa_multiflora	Rmu_co8333753.1_g000001 Rmu_sc0004865.1_g000001
rosa_samantha	Rh6AG087400 Rh6AG108800 Rh6AG109900 Rh6BG105300 Rh6CG076100 Rh6DG072800
rosa_wichuraiana	Rw6G009390 Rw6G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	758
AccB7I	CCANNNNNTGG	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	583
AcsI	RAATTY	5 cut(s)	14, 72, 518, 650, 737
AcuI	CTGAAG	1 cut(s)	538
AfaI	GTAC	3 cut(s)	748, 872, 945
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	742
AgsI	TTSAA	6 cut(s)	128, 362, 386, 492, 529, 709
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	3 cut(s)	180, 415, 893
AluI	AGCT	3 cut(s)	180, 415, 893
Alw26I	GTCTC	1 cut(s)	907
AoxI	GGCC	2 cut(s)	451, 583
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	5 cut(s)	14, 72, 518, 650, 737
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	907
BfrI	CTTAAG	1 cut(s)	742
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	3 cut(s)	271, 316, 423
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	2 cut(s)	437, 458
BsaJI	CCNNGG	2 cut(s)	447, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	447, 448
BseGI	GGATG	3 cut(s)	307, 438, 796
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	308, 854
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	425, 900
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	453, 585
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	453, 585
BspANI	GGCC	2 cut(s)	453, 585
BspCNI	CTCAG	2 cut(s)	307, 855
BspMI	ACCTGC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	447, 448
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	730, 875
Bst6I	CTCTTC	1 cut(s)	910
BstAFI	CTTAAG	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	294, 863
BstF5I	GGATG	3 cut(s)	307, 438, 796
BstHHI	GCGC	1 cut(s)	934
BstMAI	GTCTC	1 cut(s)	907
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	716
BstXI	CCANNNNNNTGG	2 cut(s)	194, 461
BsuRI	GGCC	2 cut(s)	453, 585
BtsCI	GGATG	3 cut(s)	307, 438, 796
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	4 cut(s)	165, 392, 562, 706
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	934
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	747, 871, 944
CviAII	CATG	8 cut(s)	45, 194, 365, 455, 474, 543, 762, 899
CviJI	RGCY	7 cut(s)	180, 244, 338, 415, 453, 585, 893
CviKI_1	RGCY	7 cut(s)	180, 244, 338, 415, 453, 585, 893
CviQI	GTAC	3 cut(s)	747, 871, 944
DdeI	CTNAG	2 cut(s)	294, 863
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	910
EarI	CTCTTC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	8 cut(s)	48, 197, 368, 458, 477, 546, 765, 902
FatI	CATG	8 cut(s)	44, 193, 364, 454, 473, 542, 761, 898
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	3 cut(s)	294, 445, 803
Fsp4HI	GCNGC	1 cut(s)	339
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	2 cut(s)	437, 458
HaeIII	GGCC	2 cut(s)	453, 585
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	8 cut(s)	48, 197, 368, 458, 477, 546, 765, 902
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HinfI	GANTC	5 cut(s)	41, 58, 419, 821, 859
HpaI	GTTAAC	1 cut(s)	726
Hpy166II	GTNNAC	2 cut(s)	142, 726
Hpy188I	TCNGA	5 cut(s)	57, 622, 768, 802, 864
Hpy8I	GTNNAC	2 cut(s)	142, 726
HpyAV	CCTTC	3 cut(s)	3, 193, 523
HpyCH4III	ACNGT	2 cut(s)	730, 875
HpyCH4IV	ACGT	2 cut(s)	496, 713
HpyF3I	CTNAG	2 cut(s)	294, 863
HpySE526I	ACGT	2 cut(s)	496, 713
Hsp92II	CATG	8 cut(s)	48, 197, 368, 458, 477, 546, 765, 902
HspAI	GCGC	1 cut(s)	932
KspAI	GTTAAC	1 cut(s)	726
LmnI	GCTCC	3 cut(s)	185, 289, 412
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	3 cut(s)	271, 316, 423
MaeII	ACGT	2 cut(s)	496, 713
MaeIII	GTNAC	4 cut(s)	149, 322, 793, 925
MboII	GAAGA	5 cut(s)	183, 527, 544, 721, 897
MlsI	TGGCCA	1 cut(s)	585
MluNI	TGGCCA	1 cut(s)	585
MlyI	GAGTC	3 cut(s)	52, 428, 830
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	3 cut(s)	403, 808, 921
Mox20I	TGGCCA	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	585
MslI	CAYNNNNRTG	2 cut(s)	49, 459
Msp20I	TGGCCA	1 cut(s)	585
MspCI	CTTAAG	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	449
NlaIII	CATG	8 cut(s)	48, 197, 368, 458, 477, 546, 765, 902
NspI	RCATGY	1 cut(s)	477
PasI	CCCWGGG	1 cut(s)	448
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	41, 859
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	3 cut(s)	52, 427, 829
PpsI	GAGTC	3 cut(s)	52, 427, 829
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	451
RsaI	GTAC	3 cut(s)	748, 872, 945
RsaNI	GTAC	3 cut(s)	747, 871, 944
RseI	CAYNNNNRTG	2 cut(s)	49, 459
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	3 cut(s)	52, 428, 830
ScrFI	CCNGG	1 cut(s)	449
SfaNI	GCATC	3 cut(s)	271, 316, 423
SmiMI	CAYNNNNRTG	2 cut(s)	49, 459
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	730, 875
TaiI	ACGT	2 cut(s)	499, 716
TatI	WGTACW	1 cut(s)	870
TfiI	GAWTC	2 cut(s)	41, 859
TscAI	CASTG	4 cut(s)	165, 399, 562, 706
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	6 cut(s)	33, 182, 390, 390, 629, 849
TspRI	CASTG	4 cut(s)	165, 399, 562, 706
Van91I	CCANNNNNTGG	1 cut(s)	160
Vha464I	CTTAAG	1 cut(s)	742
XapI	RAATTY	5 cut(s)	14, 72, 518, 650, 737
XceI	RCATGY	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.