RchiOBHm_Chr6g0277561

Ribosome maturation protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
40075819 .. 40078483
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
ATGATGAATAAGGGAGGGTCTCGGTTAGTGTCGAAGGTGCAGCAGCCGATTGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTGCGTCTCAAGAAGCGCGGCAGTCGCTTCGAAATTGCTTGCTACAAGAACAAGGTCCTCTCATGGCGCTCCGGCGTAGAGAAAGATTTGGATGAGGTGTTGCAGTCAAAGACGGTGTACTTGAATGTTTCCAAAGGTGTTCTTGCCAAGACCAAGGATTTGGTAGCTGCGTTTGGGTCGGATGATCAGACCAAGATTTGTTTAGAGATCTTGGATAAAGGGGAGCTTCAGGTTGCTGGCAAGGAGAGAGAGTCTCAGTTGTCCAGTCAATTTCGGGATATCGCCACTATTGTTATGCAGAAAACCTATAATCCAGAGACTCGGCGCCCTTACACTATCAGTTTGATTGAGAGGTTGATGCACGAAATTCATTTTGCTGTGGATCCACATAGCGGCTCAAAGAAGCAGGCCCTTGAAGTCATTCATGAGCTGCAAAAGCAGTTCCCGATCAAACGGTCTCCCATGAGGTTGCGACTCACGGTTCCTGAACAGGAAGTCTCAGCACTCCTGGAGAAGCTTACAACTTGGAATGCTTCCATTGTTTCAAAAGATCCATCAGGAAATCAGCTATCCATTATCTGTGAACTGGACCCTGGTTTGTATAGGGACTGTGAGGGTTTGTTGATGACACTGCATGGAAAGTATGAAGTCCTTGCTCTCTCTGTGCATGCAGAGGGTGACACAGTTATTGATCAACACGAAGAATATGAGGACGAACTGCCACGCTCACTCATTGAATCGGCTGATTCTGAATCATCAAAGAAGAAAGACACTAGTCCTTCATCTGATCCAGTAATGCAACTGAGTGAGAAAATGCAAACACAGAGCATCTCTACTGGGAATGTGAAGGCCATAGGGGAAGGAAAACAAAGCAAATGCAGCACTTGCAATGCATTTTTTGGTGATTCCAAGCAGTTCAGGGATCACTTCAAGAGTGAGTGGCACAAGCATAATTTGAAACGCAAGAGCAAGCAACTTCCTCCTCTCACAGAAGATGAGTGTGCAGCTGACATTGACATGGATGACTCTAAGGCGGATTTGAAGGATTATTCTTTCTGA

Protein Analysis

379

Amino Acids

42.73

Weight (kDa)

7.14

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBDS_N PF01172 24 - 110 1.8e-28 Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain
SBDS_domain_II PF09377 119 - 179 1.2e-22 SBDS protein, domain II
SBDS_C PF20268 182 - 244 1.8e-10 SBDS protein, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013196)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 77, 99, 474, 1115
AclWI GGATC 5 cut(s) 458, 471, 626, 863, 1011
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 406
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 473
AgsI TTSAA 7 cut(s) 205, 497, 627, 818, 1012, 1039, 1123
AhlI ACTAGT 1 cut(s) 854
AjnI CCWGG 2 cut(s) 588, 673
AluBI AGCT 6 cut(s) 248, 307, 511, 598, 649, 1088
AluI AGCT 6 cut(s) 248, 307, 511, 598, 649, 1088
Alw26I GTCTC 6 cut(s) 24, 92, 339, 392, 543, 583
AlwI GGATC 5 cut(s) 458, 471, 626, 863, 1011
AoxI GGCC 2 cut(s) 489, 930
ApeKI GCWGC 6 cut(s) 40, 43, 248, 511, 960, 1085
ApoI RAATTY 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 223, 255
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 3 cut(s) 99, 150, 408
AspS9I GGNCC 3 cut(s) 136, 490, 670
AsuHPI GGTGA 2 cut(s) 770, 995
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 2 cut(s) 136, 670
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 405
BbvI GCAGC 6 cut(s) 52, 55, 235, 498, 972, 1097
BccI CCATC 1 cut(s) 643
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 2 cut(s) 590, 675
BclI TGATCA 2 cut(s) 265, 772
BcoDI GTCTC 6 cut(s) 24, 92, 339, 392, 543, 583
BcuI ACTAGT 1 cut(s) 854
BfaI CTAG 1 cut(s) 855
BfoI RGCGCY 2 cut(s) 151, 409
BglI GCCNNNNNGGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 288
BisI GCNGC 8 cut(s) 41, 44, 100, 249, 475, 512, 961, 1086
BlsI GCNGC 8 cut(s) 42, 45, 101, 250, 476, 513, 962, 1087
Bme1390I CCNGG 2 cut(s) 590, 675
Bme18I GGWCC 2 cut(s) 136, 670
BmgT120I GGNCC 3 cut(s) 136, 490, 670
BmiI GGNNCC 4 cut(s) 407, 465, 564, 672
BmrFI CCNGG 2 cut(s) 590, 675
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 2 cut(s) 429, 918
BmuI ACTGGG 1 cut(s) 927
BoxI GACNNNNGTC 1 cut(s) 855
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 406
BsaI GGTCTC 2 cut(s) 24, 543
BsaJI CCNNGG 2 cut(s) 234, 673
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 4 cut(s) 345, 672, 872, 922
Bse3DI GCAATG 1 cut(s) 976
BseBI CCWGG 2 cut(s) 590, 675
BseDI CCNNGG 2 cut(s) 234, 673
BseGI GGATG 3 cut(s) 178, 268, 1108
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 1 cut(s) 976
BseMII CTCAG 3 cut(s) 350, 594, 875
BseNI ACTGG 4 cut(s) 345, 672, 872, 922
BseRI GAGGAG 1 cut(s) 1053
BseXI GCAGC 6 cut(s) 52, 55, 235, 498, 972, 1097
BsgI GTGCAG 2 cut(s) 59, 1104
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 491, 932
BshNI GGYRCC 1 cut(s) 405
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 6 cut(s) 24, 92, 339, 392, 543, 583
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 2 cut(s) 491, 932
Bso31I GGTCTC 2 cut(s) 24, 543
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
BspACI CCGC 4 cut(s) 77, 99, 474, 1115
BspANI GGCC 2 cut(s) 491, 932
BspCNI CTCAG 3 cut(s) 349, 593, 876
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 4 cut(s) 407, 465, 564, 672
BspPI GGATC 5 cut(s) 458, 471, 626, 863, 1011
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 405
BspTNI GGTCTC 2 cut(s) 24, 543
BsrDI GCAATG 1 cut(s) 976
BsrI ACTGG 4 cut(s) 345, 672, 872, 922
BssECI CCNNGG 2 cut(s) 234, 673
BssMI GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
BssNI GRCGYC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 590, 675
Bst4CI ACNGT 5 cut(s) 196, 537, 562, 692, 766
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 966
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 5 cut(s) 121, 319, 489, 750, 1052
BstDEI CTNAG 4 cut(s) 336, 580, 884, 1110
BstF5I GGATG 3 cut(s) 178, 268, 1108
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 151, 409
BstHHI GCGC 3 cut(s) 99, 150, 408
BstKTI GATC 8 cut(s) 268, 291, 466, 531, 634, 775, 871, 1006
BstMAI GTCTC 6 cut(s) 24, 92, 339, 392, 543, 583
BstMBI GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 52, 61, 105, 517, 960, 966
BstNI CCWGG 2 cut(s) 590, 675
BstNSI RCATGY 1 cut(s) 752
BstPAI GACNNNNGTC 1 cut(s) 855
BstSCI CCNGG 2 cut(s) 588, 673
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 6 cut(s) 52, 55, 235, 498, 972, 1097
BstX2I RGATCY 3 cut(s) 288, 463, 631
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 3 cut(s) 288, 463, 631
BsuRI GGCC 2 cut(s) 491, 932
BtsCI GGATG 3 cut(s) 178, 268, 1108
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 1 cut(s) 710
Cac8I GCNNGC 5 cut(s) 121, 319, 489, 750, 1052
CciI TCATGA 1 cut(s) 505
CfoI GCGC 3 cut(s) 99, 150, 408
Cfr13I GGNCC 3 cut(s) 136, 490, 670
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 199
CviAII CATG 6 cut(s) 144, 506, 544, 716, 749, 1099
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 4 cut(s) 336, 580, 884, 1110
DinI GGCGCC 1 cut(s) 407
DpnI GATC 8 cut(s) 267, 290, 465, 530, 633, 774, 870, 1005
DpnII GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 1130
Eco130I CCWWGG 1 cut(s) 234
Eco31I GGTCTC 2 cut(s) 24, 543
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 136, 670
Eco57I CTGAAG 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 136, 490
EcoRII CCWGG 2 cut(s) 588, 673
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 976
EgeI GGCGCC 1 cut(s) 407
EheI GGCGCC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 6 cut(s) 147, 509, 547, 719, 752, 1102
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 291, 323
FaqI GGGAC 1 cut(s) 701
FatI CATG 6 cut(s) 143, 505, 543, 715, 748, 1098
FbaI TGATCA 2 cut(s) 265, 772
Fnu4HI GCNGC 8 cut(s) 41, 44, 100, 249, 475, 512, 961, 1086
FokI GGATG 3 cut(s) 185, 275, 1115
Fsp4HI GCNGC 8 cut(s) 41, 44, 100, 249, 475, 512, 961, 1086
FspBI CTAG 1 cut(s) 855
GlaI GCGC 3 cut(s) 98, 149, 407
GluI GCNGC 8 cut(s) 41, 44, 100, 249, 475, 512, 961, 1086
GsuI CTGGAG 1 cut(s) 611
HaeII RGCGCY 2 cut(s) 151, 409
HaeIII GGCC 2 cut(s) 491, 932
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 74
HhaI GCGC 3 cut(s) 99, 150, 408
Hin1I GRCGYC 1 cut(s) 406
Hin1II CATG 6 cut(s) 147, 509, 547, 719, 752, 1102
Hin6I GCGC 3 cut(s) 97, 148, 406
HinP1I GCGC 3 cut(s) 97, 148, 406
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 8 cut(s) 332, 400, 555, 818, 827, 833, 986, 1106
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 770, 995
Hpy166II GTNNAC 2 cut(s) 199, 665
Hpy188I TCNGA 5 cut(s) 262, 270, 832, 868, 1139
Hpy188III TCNNGA 8 cut(s) 91, 356, 395, 506, 526, 566, 639, 1012
Hpy8I GTNNAC 2 cut(s) 199, 665
HpyAV CCTTC 5 cut(s) 28, 870, 922, 935, 1117
HpyCH4III ACNGT 5 cut(s) 196, 537, 562, 692, 766
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 61, 105, 517, 960, 966
HpyF3I CTNAG 4 cut(s) 336, 580, 884, 1110
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 406
Hsp92II CATG 6 cut(s) 147, 509, 547, 719, 752, 1102
HspAI GCGC 3 cut(s) 97, 148, 406
KasI GGCGCC 1 cut(s) 405
Ksp22I TGATCA 2 cut(s) 265, 772
Kzo9I GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
LmnI GCTCC 2 cut(s) 155, 304
Lsp1109I GCAGC 6 cut(s) 52, 55, 235, 498, 972, 1097
LweI GCATC 2 cut(s) 429, 918
MaeI CTAG 1 cut(s) 855
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 758
MalI GATC 8 cut(s) 267, 290, 465, 530, 633, 774, 870, 1005
MboI GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
MboII GAAGA 4 cut(s) 70, 794, 856, 1085
MflI RGATCY 3 cut(s) 288, 463, 631
MluCI AATT 4 cut(s) 114, 350, 447, 1033
Mly113I GGCGCC 1 cut(s) 406
MlyI GAGTC 4 cut(s) 341, 394, 549, 1100
MmeI TCCRAC 1 cut(s) 240
Mph1103I ATGCAT 1 cut(s) 976
MroXI GAANNNNTTC 1 cut(s) 501
MslI CAYNNNNRTG 1 cut(s) 1097
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 590, 675
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 2 cut(s) 590, 675
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 52, 61, 105, 517, 960, 966
NarI GGCGCC 1 cut(s) 406
NdeII GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
NlaIII CATG 6 cut(s) 147, 509, 547, 719, 752, 1102
NlaIV GGNNCC 4 cut(s) 407, 465, 564, 672
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 758
NsiI ATGCAT 1 cut(s) 976
NspI RCATGY 1 cut(s) 752
NspV TTCGAA 1 cut(s) 111
PaeI GCATGC 1 cut(s) 752
PagI TCATGA 1 cut(s) 505
PctI GAATGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 818, 827, 833, 986
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 8 cut(s) 42, 45, 101, 250, 476, 513, 962, 1087
PleI GAGTC 4 cut(s) 340, 394, 549, 1100
PluTI GGCGCC 1 cut(s) 409
PpsI GAGTC 4 cut(s) 340, 394, 549, 1100
PpuMI RGGWCCY 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 588, 673
PspGI CCWGG 2 cut(s) 588, 673
PspN4I GGNNCC 4 cut(s) 407, 465, 564, 672
PspPI GGNCC 3 cut(s) 136, 490, 670
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 3 cut(s) 288, 463, 631
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 1097
SatI GCNGC 8 cut(s) 41, 44, 100, 249, 475, 512, 961, 1086
Sau3AI GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 868, 1003
Sau96I GGNCC 3 cut(s) 136, 490, 670
SchI GAGTC 4 cut(s) 341, 394, 549, 1100
ScrFI CCNGG 2 cut(s) 590, 675
SfaNI GCATC 2 cut(s) 429, 918
SfoI GGCGCC 1 cut(s) 407
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 136, 670
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SpeI ACTAGT 1 cut(s) 854
SphI GCATGC 1 cut(s) 752
Sse9I AATT 4 cut(s) 114, 350, 447, 1033
SsiI CCGC 4 cut(s) 77, 99, 474, 1115
SspDI GGCGCC 1 cut(s) 405
SspMI CTAG 1 cut(s) 855
StyD4I CCNGG 2 cut(s) 588, 673
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 5 cut(s) 196, 537, 562, 692, 766
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 32, 111
TasI AATT 4 cut(s) 114, 350, 447, 1033
TatI WGTACW 1 cut(s) 198
TauI GCSGC 2 cut(s) 102, 477
TfiI GAWTC 4 cut(s) 818, 827, 833, 986
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 1 cut(s) 758
TseI GCWGC 6 cut(s) 40, 43, 248, 511, 960, 1085
Tsp45I GTSAC 1 cut(s) 758
TspDTI ATGAA 5 cut(s) 20, 440, 494, 741, 852
TspRI CASTG 1 cut(s) 717
VpaK11BI GGWCC 2 cut(s) 136, 670
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 1 cut(s) 855
Zsp2I ATGCAT 1 cut(s) 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.